CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BARQU (50S ribosomal protein L1 OS=Bartonella quintana GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.757e-19
Identity = 56/160 (35.00%), Postives = 82/160 (51.25%), Query Frame = 1
Query:   55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            IK   K  +   +  L DA+  VK  A A FDET+E  + L + PR  + +VRG  +LP+G  + VR                         L E I +SG +D ++C +T   M  + ++ KIL    LMPNPK GTVT DVA AV+ +K G ++F+++
Sbjct:    8 IKDIRKDIDFNELYALKDAVSMVKERAVAKFDETIEISMNLGVDPRHADQMVRGVAHLPNGTGRNVRVAVFARGEKAEEAKASGADIVGAEDLFESI-NSGTIDFDRCIATPDMMLLVGRLGKILGPRNLMPNPKVGTVTLDVANAVKASKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ANAVT (50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.757e-19
Identity = 53/144 (36.81%), Postives = 78/144 (54.17%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +DA+  +K  A A F E  EAH+RL I P+ T+  +R T+ LP G  + VR                        +LI+EI   G++D +K  +T   MP++ K+ K+L   GLMP+PK GTVT D+A A+ E K G ++F+ D
Sbjct:   24 LDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRTTVALPKGTGQIVRVAVIARGEKVTEASNAGADVFGSEELIDEI-QKGRMDFDKLIATPDVMPQVAKLGKMLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRAD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ANASP (50S ribosomal protein L1 OS=Anabaena sp. (strain PCC 7120) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.757e-19
Identity = 54/144 (37.50%), Postives = 78/144 (54.17%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +DA+  +K  A A F E  EAH+RL I P+ T+  +R T+ LP G  + VR                        +LI+EI   G++D +K  +T   MP++ K+ K+L   GLMP+PK GTVT DVA A+ E K G ++F+ D
Sbjct:   24 LDALGLLKETATAKFGEAAEAHIRLGIDPKYTDQQLRTTVALPKGTGQIVRVAVIARGEKVTEASNAGADVVGSEELIDEI-QKGRMDFDKLIATPDVMPQVAKLGKMLGPRGLMPSPKGGTVTFDVASAIAEFKAGKLEFRAD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ACHLI (50S ribosomal protein L1 OS=Acholeplasma laidlawii (strain PG-8A) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.757e-19
Identity = 53/144 (36.81%), Postives = 78/144 (54.17%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++A++  K  + A FD TVE   RL + PRK +  +RG ++LPHG  K VR                       ++LI++I   G  D +   +T   M +L K+ ++L   GLMPNPK GTVT DVA+AV+E K G I+++ D
Sbjct:   23 LEAVELAKKTSVAKFDATVEVAFRLNVDPRKADQNLRGAISLPHGTGKTVRVVVIAKPEKAKEALAAGALEAGDVELIDKIGK-GWFDFDVMVATPDMMAQLGKLGRVLGPKGLMPNPKTGTVTLDVAKAVEEIKAGKIEYRTD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SYNAS (50S ribosomal protein L1 OS=Syntrophus aciditrophicus (strain SB) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.906e-19
Identity = 57/145 (39.31%), Postives = 80/145 (55.17%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L +A+  V   A+A FDETVEA VRL + P   + +VRG++ LP+G  K VR                        + IE+I  SG L+ ++  +T   M  + K+ KIL   GLMPNPK GTVT DVA AV+E K G ++F+++
Sbjct:   23 LSEALALVTDTARAKFDETVEAAVRLGVNPAHADQMVRGSVVLPNGLGKTVRVLVFAKGEKEKEALDAGADYAGSDEFIEKI-KSGWLEFDRVIATPDMMGNVGKLGKILGPRGLMPNPKVGTVTFDVATAVKEVKAGKVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SPHWW (50S ribosomal protein L1 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.906e-19
Identity = 54/159 (33.96%), Postives = 83/159 (52.20%), Query Frame = 1
Query:   58 KPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K ++   +S+ +  + +AI   K NA + FDET+E  + L + PR  + +VRG + LP G  K VR                         L+E I   G +D ++C +T   M  + ++ KIL   GLMPNPK GTVT +VA AV+ AK G ++F+++
Sbjct:    9 KNQAASVDSQKLYGVDEAIALAKQNATSKFDETIEVALNLGVDPRHADQMVRGVVTLPKGTGKDVRVGVFARGAKADEAKAAGAEVVGAEDLLETI-QGGTVDFDRCIATPDMMGLVGRLGKILGPKGLMPNPKLGTVTMNVAEAVKAAKGGQVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SILST (50S ribosomal protein L1 OS=Silicibacter sp. (strain TM1040) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.906e-19
Identity = 53/147 (36.05%), Postives = 76/147 (51.70%), Query Frame = 1
Query:   94 LDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L + +A+  VKANA   FDETVE  + L +  R  + +VRG + LP+G  K +R                         L+E I   G +D ++C +T   MP + ++ K+L    LMPNPK GTVT DV  AV+ AK G ++FK +
Sbjct:   21 LTIEEAVALVKANATTKFDETVEIAMNLGVDTRHADQMVRGVVGLPNGTGKTMRVAVFARGPKADEAKEAGADIVGAEDLMETI-QGGTIDFDRCIATPDMMPVVGRLGKVLGPRNLMPNPKVGTVTMDVKAAVEAAKGGEVQFKAE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SALTO (50S ribosomal protein L1 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.906e-19
Identity = 53/143 (37.06%), Postives = 74/143 (51.75%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A+K  K      FD TVE  +RL + PRK + +VRGT+NLPHG  K  R                        +L+  I   G LD +   +T   M ++ +I++IL   GLMPNPK GTVT +V +AV + K G I F++D
Sbjct:   24 EAVKLAKETTSVKFDATVEVAMRLGVDPRKADQMVRGTVNLPHGTGKTARVIVFAAGAKAEEAVAAGADEVGTDELVARI-QGGWLDFDAAIATPDQMAKIGRIARILGPRGLMPNPKTGTVTMNVTKAVADIKGGKIAFRVD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RICCK (50S ribosomal protein L1 OS=Rickettsia canadensis (strain McKiel) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.906e-19
Identity = 49/160 (30.63%), Postives = 88/160 (55.00%), Query Frame = 1
Query:   55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            I+   +K +S  + +L +A++++K+ +   FD T+E  ++L I PR ++ ++RG +NLP G  K VR                         +I+EI  +GK++ + C +T   M  +  +++IL   GLMPNPK GTVT D+  A++ AK G ++++ +
Sbjct:   17 IREAREKVKSDTLYNLTNAVERLKSASYVKFDPTLEIVMKLGIDPRHSDQMIRGVVNLPAGTGKTVRVAVICKAERVEEAKSAGADLVGSTSIIDEI-KAGKINFDVCIATPDMMAAIGSVARILGPKGLMPNPKLGTVTLDIKNAIKNAKSGQVEYRAE 175          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHOCS (50S ribosomal protein L1 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.906e-19
Identity = 54/145 (37.24%), Postives = 80/145 (55.17%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L +A+K V++NA A FDETVE  + L I PR  + +VRG + LP+G  K VR                         L ++I  +G+ + ++C +T   M  + ++ KIL   GLMPNPK GTVT +VA AV+ AK G ++F+ +
Sbjct:   23 LDEAVKTVRSNATAKFDETVEIAMNLGIDPRHADQMVRGMVQLPNGTGKTVRVAVFARAGKADEALAAGADIVGAEDLADKI-QAGEFNFDRCIATPDMMGVVGRLGKILGPRGLMPNPKLGTVTPNVAEAVKAAKGGAVEFRAE 166          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_BARQU3.757e-1935.0050S ribosomal protein L1 OS=Bartonella quintana GN... [more]
RL1_ANAVT3.757e-1936.8150S ribosomal protein L1 OS=Anabaena variabilis (s... [more]
RL1_ANASP3.757e-1937.5050S ribosomal protein L1 OS=Anabaena sp. (strain P... [more]
RL1_ACHLI3.757e-1936.8150S ribosomal protein L1 OS=Acholeplasma laidlawii... [more]
RL1_SYNAS4.906e-1939.3150S ribosomal protein L1 OS=Syntrophus aciditrophi... [more]
RL1_SPHWW4.906e-1933.9650S ribosomal protein L1 OS=Sphingomonas wittichii... [more]
RL1_SILST4.906e-1936.0550S ribosomal protein L1 OS=Silicibacter sp. (stra... [more]
RL1_SALTO4.906e-1937.0650S ribosomal protein L1 OS=Salinispora tropica (s... [more]
RL1_RICCK4.906e-1930.6350S ribosomal protein L1 OS=Rickettsia canadensis ... [more]
RL1_RHOCS4.906e-1937.2450S ribosomal protein L1 OS=Rhodospirillum centenu... [more]

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Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
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