CX288757
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BARQU (50S ribosomal protein L1 OS=Bartonella quintana GN=rplA PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.757e-19 Identity = 56/160 (35.00%), Postives = 82/160 (51.25%), Query Frame = 1 Query: 55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 IK K + + L DA+ VK A A FDET+E + L + PR + +VRG +LP+G + VR L E I +SG +D ++C +T M + ++ KIL LMPNPK GTVT DVA AV+ +K G ++F+++ Sbjct: 8 IKDIRKDIDFNELYALKDAVSMVKERAVAKFDETIEISMNLGVDPRHADQMVRGVAHLPNGTGRNVRVAVFARGEKAEEAKASGADIVGAEDLFESI-NSGTIDFDRCIATPDMMLLVGRLGKILGPRNLMPNPKVGTVTLDVANAVKASKGGAVEFRVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ANAVT (50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplA PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.757e-19 Identity = 53/144 (36.81%), Postives = 78/144 (54.17%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +DA+ +K A A F E EAH+RL I P+ T+ +R T+ LP G + VR +LI+EI G++D +K +T MP++ K+ K+L GLMP+PK GTVT D+A A+ E K G ++F+ D Sbjct: 24 LDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRTTVALPKGTGQIVRVAVIARGEKVTEASNAGADVFGSEELIDEI-QKGRMDFDKLIATPDVMPQVAKLGKMLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRAD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ANASP (50S ribosomal protein L1 OS=Anabaena sp. (strain PCC 7120) GN=rplA PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.757e-19 Identity = 54/144 (37.50%), Postives = 78/144 (54.17%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +DA+ +K A A F E EAH+RL I P+ T+ +R T+ LP G + VR +LI+EI G++D +K +T MP++ K+ K+L GLMP+PK GTVT DVA A+ E K G ++F+ D Sbjct: 24 LDALGLLKETATAKFGEAAEAHIRLGIDPKYTDQQLRTTVALPKGTGQIVRVAVIARGEKVTEASNAGADVVGSEELIDEI-QKGRMDFDKLIATPDVMPQVAKLGKMLGPRGLMPSPKGGTVTFDVASAIAEFKAGKLEFRAD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ACHLI (50S ribosomal protein L1 OS=Acholeplasma laidlawii (strain PG-8A) GN=rplA PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.757e-19 Identity = 53/144 (36.81%), Postives = 78/144 (54.17%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++A++ K + A FD TVE RL + PRK + +RG ++LPHG K VR ++LI++I G D + +T M +L K+ ++L GLMPNPK GTVT DVA+AV+E K G I+++ D Sbjct: 23 LEAVELAKKTSVAKFDATVEVAFRLNVDPRKADQNLRGAISLPHGTGKTVRVVVIAKPEKAKEALAAGALEAGDVELIDKIGK-GWFDFDVMVATPDMMAQLGKLGRVLGPKGLMPNPKTGTVTLDVAKAVEEIKAGKIEYRTD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SYNAS (50S ribosomal protein L1 OS=Syntrophus aciditrophicus (strain SB) GN=rplA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.906e-19 Identity = 57/145 (39.31%), Postives = 80/145 (55.17%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L +A+ V A+A FDETVEA VRL + P + +VRG++ LP+G K VR + IE+I SG L+ ++ +T M + K+ KIL GLMPNPK GTVT DVA AV+E K G ++F+++ Sbjct: 23 LSEALALVTDTARAKFDETVEAAVRLGVNPAHADQMVRGSVVLPNGLGKTVRVLVFAKGEKEKEALDAGADYAGSDEFIEKI-KSGWLEFDRVIATPDMMGNVGKLGKILGPRGLMPNPKVGTVTFDVATAVKEVKAGKVEFRVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SPHWW (50S ribosomal protein L1 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.906e-19 Identity = 54/159 (33.96%), Postives = 83/159 (52.20%), Query Frame = 1 Query: 58 KPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 K ++ +S+ + + +AI K NA + FDET+E + L + PR + +VRG + LP G K VR L+E I G +D ++C +T M + ++ KIL GLMPNPK GTVT +VA AV+ AK G ++F+++ Sbjct: 9 KNQAASVDSQKLYGVDEAIALAKQNATSKFDETIEVALNLGVDPRHADQMVRGVVTLPKGTGKDVRVGVFARGAKADEAKAAGAEVVGAEDLLETI-QGGTVDFDRCIATPDMMGLVGRLGKILGPKGLMPNPKLGTVTMNVAEAVKAAKGGQVEFRVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SILST (50S ribosomal protein L1 OS=Silicibacter sp. (strain TM1040) GN=rplA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.906e-19 Identity = 53/147 (36.05%), Postives = 76/147 (51.70%), Query Frame = 1 Query: 94 LDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L + +A+ VKANA FDETVE + L + R + +VRG + LP+G K +R L+E I G +D ++C +T MP + ++ K+L LMPNPK GTVT DV AV+ AK G ++FK + Sbjct: 21 LTIEEAVALVKANATTKFDETVEIAMNLGVDTRHADQMVRGVVGLPNGTGKTMRVAVFARGPKADEAKEAGADIVGAEDLMETI-QGGTIDFDRCIATPDMMPVVGRLGKVLGPRNLMPNPKVGTVTMDVKAAVEAAKGGEVQFKAE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SALTO (50S ribosomal protein L1 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rplA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.906e-19 Identity = 53/143 (37.06%), Postives = 74/143 (51.75%), Query Frame = 1 Query: 106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +A+K K FD TVE +RL + PRK + +VRGT+NLPHG K R +L+ I G LD + +T M ++ +I++IL GLMPNPK GTVT +V +AV + K G I F++D Sbjct: 24 EAVKLAKETTSVKFDATVEVAMRLGVDPRKADQMVRGTVNLPHGTGKTARVIVFAAGAKAEEAVAAGADEVGTDELVARI-QGGWLDFDAAIATPDQMAKIGRIARILGPRGLMPNPKTGTVTMNVTKAVADIKGGKIAFRVD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RICCK (50S ribosomal protein L1 OS=Rickettsia canadensis (strain McKiel) GN=rplA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.906e-19 Identity = 49/160 (30.63%), Postives = 88/160 (55.00%), Query Frame = 1 Query: 55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 I+ +K +S + +L +A++++K+ + FD T+E ++L I PR ++ ++RG +NLP G K VR +I+EI +GK++ + C +T M + +++IL GLMPNPK GTVT D+ A++ AK G ++++ + Sbjct: 17 IREAREKVKSDTLYNLTNAVERLKSASYVKFDPTLEIVMKLGIDPRHSDQMIRGVVNLPAGTGKTVRVAVICKAERVEEAKSAGADLVGSTSIIDEI-KAGKINFDVCIATPDMMAAIGSVARILGPKGLMPNPKLGTVTLDIKNAIKNAKSGQVEYRAE 175
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHOCS (50S ribosomal protein L1 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.906e-19 Identity = 54/145 (37.24%), Postives = 80/145 (55.17%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L +A+K V++NA A FDETVE + L I PR + +VRG + LP+G K VR L ++I +G+ + ++C +T M + ++ KIL GLMPNPK GTVT +VA AV+ AK G ++F+ + Sbjct: 23 LDEAVKTVRSNATAKFDETVEIAMNLGIDPRHADQMVRGMVQLPNGTGKTVRVAVFARAGKADEALAAGADIVGAEDLADKI-QAGEFNFDRCIATPDMMGVVGRLGKILGPRGLMPNPKLGTVTPNVAEAVKAAKGGAVEFRAE 166 The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bpback to top |