CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4782 contig Ccv1_Contig4782:524..1061. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_NOCSJ (50S ribosomal protein L1 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=rplA PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.379e-21
Identity = 56/142 (39.44%), Postives = 81/142 (57.04%), Query Frame = 1
Query:  109 AIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            AIK  K ++K  FDETV+  +RL + PRK + +VRGT+NLPHG  K  R                        +LI+++A  G LD +   +T   M ++ ++ ++L   GLMPNPK GTVT DVA+AV + K G I+F++D
Sbjct:   25 AIKIAKTSSKKKFDETVDVVMRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFANADKAEAAREAGADVVGGDELIDKVAG-GWLDFDAVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTPDVAKAVSDIKGGKIEFRVD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CALS8 (50S ribosomal protein L1 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.379e-21
Identity = 57/156 (36.54%), Postives = 83/156 (53.21%), Query Frame = 1
Query:   67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K  +   + D  +AI      + A FDETVE HVRL + PR  +  VRGT+ LP+G  K VR                        +L+ +I + G  D + C +T   M  + ++ K+L   GLMPNPK GTVT D+A+AV+EAK G ++F++D
Sbjct:   11 AKLVDKTKLYDPEEAIDLALKTSYAKFDETVEVHVRLNVDPRHADQQVRGTVVLPNGTGKNVRVLVFAKGDKAKEAEEAGADYVGAEELVAKIQNEGWTDFDVCIATPDMMGLVGRLGKVLGPKGLMPNPKSGTVTMDIAKAVKEAKAGRVEFRLD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BRAJA (50S ribosomal protein L1 OS=Bradyrhizobium japonicum GN=rplA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.379e-21
Identity = 53/145 (36.55%), Postives = 81/145 (55.86%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L +AIK VK  AKA FDET+E  + L + PR  + +VRG + LP+G  + +R                         L+E++  +G +D ++C +T   MP + ++ K+L   GLMPNPK GTVT DV  AV+ AK G ++F+++
Sbjct:   22 LAEAIKMVKERAKAKFDETIEVAINLGVDPRHADQMVRGVVTLPNGTGRTLRVGVFARGAKADEAKAAGADVVGAEDLVEKV-QNGSIDFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKIGTVTMDVTGAVKGAKGGSVEFRVE 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_AGRVS (50S ribosomal protein L1 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rplA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.379e-21
Identity = 55/145 (37.93%), Postives = 80/145 (55.17%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L DAI  VK  A A FDET+E  + L + PR  + +VRG +NLP+G  + VR                         L+E I   GK+D ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV+ +K G ++F+++
Sbjct:   23 LSDAISMVKERAVAKFDETIEIAMNLGVDPRHADQMVRGVVNLPNGTGRDVRVAVFARGAKADEARAAGAEVVGAEDLVE-IVQGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_STRCO (50S ribosomal protein L1 OS=Streptomyces coelicolor GN=rplA PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.802e-21
Identity = 54/144 (37.50%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++A++  K  + + FD TVE   RL + PRK + +VRGT+NLPHG  K  R                        +LI+E+ S G+LD +   +T   M ++ ++ ++L   GLMPNPK GTVT DVA+AV + K G I+F++D
Sbjct:   24 LEAVRLAKETSTSKFDGTVEVAFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDRAEAATAAGADIVGSDELIDEV-SKGRLDFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTPDVAKAVNDIKGGKIEFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PARDP (50S ribosomal protein L1 OS=Paracoccus denitrificans (strain Pd 1222) GN=rplA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.802e-21
Identity = 58/147 (39.46%), Postives = 80/147 (54.42%), Query Frame = 1
Query:   94 LDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L + +A+K VK NA A FDETVE  + L + PR  + +VRG + LP+G  K VR                         L+E I  SGK++ ++C +T   MP + ++ KIL    LMPNPK GTVT DV  AV+ AK G ++FK +
Sbjct:   21 LAVEEAVKLVKENASAKFDETVEIAMNLGVDPRHADQMVRGVVTLPNGTGKDVRVAVFARGPKADEAKAAGAEIVGAEDLMETI-QSGKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTMDVKAAVEAAKGGEVQFKAE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_THENN (50S ribosomal protein L1 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.353e-21
Identity = 60/158 (37.97%), Postives = 84/158 (53.16%), Query Frame = 1
Query:   64 ESKKKESRP-VLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            E+KK   R    DL +A++ VK  A A FDET+E H++  I  RK +  +RGT+ LPHG  K V+                         L+E+I   G LD +   +T   M  + ++ KIL   GLMP+PK GTVTN+VA AV+E K+G I+ + D
Sbjct:   10 EAKKLVDRTKYYDLDEAVELVKKTATAKFDETIELHIQTGIDYRKPDQHIRGTIVLPHGTGKEVKVLVFARGEKAKEAQEAGADYVGAEDLVEKIEKEGFLDFDVAIATPDMMRVIGRLGKILGPRGLMPSPKSGTVTNEVAEAVKEFKKGRIEVRTD 167          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_STRAW (50S ribosomal protein L1 OS=Streptomyces avermitilis GN=rplA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.353e-21
Identity = 54/144 (37.50%), Postives = 80/144 (55.56%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++A++  K  + + FD TVE   RL + PRK + +VRGT+NLPHG  K  R                        +LI+E+ S G+LD +   +T   M ++ ++ ++L   GLMPNPK GTVT DV +AV E K G I+F++D
Sbjct:   24 LEAVRLAKETSTSKFDGTVEVAFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDRAEAARAAGADIVGSDELIDEV-SKGRLDFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTPDVVKAVNEIKGGKIEFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_THEP1 (50S ribosomal protein L1 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.073e-21
Identity = 58/146 (39.73%), Postives = 78/146 (53.42%), Query Frame = 1
Query:   97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            DL +AI+ VK  A A FDET+E H++  I  RK E  +RGT+ LPHG  K VR                         L+E+I   G LD +   +T   M  + ++ KIL   GLMP+PK GTVT +VA AV+E K+G I+ + D
Sbjct:   22 DLDEAIELVKKTATAKFDETIELHIQTGIDYRKPEQHIRGTVVLPHGTGKEVRVLVFAKGEAAKEALEAGADYVGAEDLVEKIEKEGFLDFDVAIATPDMMRVIGRLGKILGPRGLMPSPKSGTVTQEVAEAVKEFKKGRIEVRTD 167          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHISN (50S ribosomal protein L1 OS=Rhizobium sp. (strain NGR234) GN=rplA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.073e-21
Identity = 53/148 (35.81%), Postives = 81/148 (54.73%), Query Frame = 1
Query:   91 VLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            V  L +A+  VK  A A FDET+E  + L + PR  + +VRG +NLP+G  ++VR                         L+E I   GK+D ++C +T   MP + ++ K+L   G+MPNPK GTVT DV  AV+ +K G ++F+++
Sbjct:   20 VYGLTEAVTLVKERATAKFDETIEVAMNLGVDPRHADQMVRGVVNLPNGTGRSVRVAVFARGAKADEAKAAGADVVGAEDLVE-IVQGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVTAAVKSSKGGAVEFRVE 166          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_NOCSJ1.379e-2139.4450S ribosomal protein L1 OS=Nocardioides sp. (stra... [more]
RL1_CALS81.379e-2136.5450S ribosomal protein L1 OS=Caldicellulosiruptor s... [more]
RL1_BRAJA1.379e-2136.5550S ribosomal protein L1 OS=Bradyrhizobium japonic... [more]
RL1_AGRVS1.379e-2137.9350S ribosomal protein L1 OS=Agrobacterium vitis (s... [more]
RL1_STRCO1.802e-2137.5050S ribosomal protein L1 OS=Streptomyces coelicolo... [more]
RL1_PARDP1.802e-2139.4650S ribosomal protein L1 OS=Paracoccus denitrifica... [more]
RL1_THENN2.353e-2137.9750S ribosomal protein L1 OS=Thermotoga neapolitana... [more]
RL1_STRAW2.353e-2137.5050S ribosomal protein L1 OS=Streptomyces avermitil... [more]
RL1_THEP13.073e-2139.7350S ribosomal protein L1 OS=Thermotoga petrophila ... [more]
RL1_RHISN3.073e-2135.8150S ribosomal protein L1 OS=Rhizobium sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
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