CX288757
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_NOCSJ (50S ribosomal protein L1 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=rplA PE=3 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 1.379e-21 Identity = 56/142 (39.44%), Postives = 81/142 (57.04%), Query Frame = 1 Query: 109 AIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 AIK K ++K FDETV+ +RL + PRK + +VRGT+NLPHG K R +LI+++A G LD + +T M ++ ++ ++L GLMPNPK GTVT DVA+AV + K G I+F++D Sbjct: 25 AIKIAKTSSKKKFDETVDVVMRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFANADKAEAAREAGADVVGGDELIDKVAG-GWLDFDAVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTPDVAKAVSDIKGGKIEFRVD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CALS8 (50S ribosomal protein L1 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplA PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.379e-21 Identity = 57/156 (36.54%), Postives = 83/156 (53.21%), Query Frame = 1 Query: 67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +K + + D +AI + A FDETVE HVRL + PR + VRGT+ LP+G K VR +L+ +I + G D + C +T M + ++ K+L GLMPNPK GTVT D+A+AV+EAK G ++F++D Sbjct: 11 AKLVDKTKLYDPEEAIDLALKTSYAKFDETVEVHVRLNVDPRHADQQVRGTVVLPNGTGKNVRVLVFAKGDKAKEAEEAGADYVGAEELVAKIQNEGWTDFDVCIATPDMMGLVGRLGKVLGPKGLMPNPKSGTVTMDIAKAVKEAKAGRVEFRLD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BRAJA (50S ribosomal protein L1 OS=Bradyrhizobium japonicum GN=rplA PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.379e-21 Identity = 53/145 (36.55%), Postives = 81/145 (55.86%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L +AIK VK AKA FDET+E + L + PR + +VRG + LP+G + +R L+E++ +G +D ++C +T MP + ++ K+L GLMPNPK GTVT DV AV+ AK G ++F+++ Sbjct: 22 LAEAIKMVKERAKAKFDETIEVAINLGVDPRHADQMVRGVVTLPNGTGRTLRVGVFARGAKADEAKAAGADVVGAEDLVEKV-QNGSIDFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKIGTVTMDVTGAVKGAKGGSVEFRVE 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_AGRVS (50S ribosomal protein L1 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rplA PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.379e-21 Identity = 55/145 (37.93%), Postives = 80/145 (55.17%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L DAI VK A A FDET+E + L + PR + +VRG +NLP+G + VR L+E I GK+D ++C +T MP + ++ K+L G+MPNPK GTVT DVA AV+ +K G ++F+++ Sbjct: 23 LSDAISMVKERAVAKFDETIEIAMNLGVDPRHADQMVRGVVNLPNGTGRDVRVAVFARGAKADEARAAGAEVVGAEDLVE-IVQGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_STRCO (50S ribosomal protein L1 OS=Streptomyces coelicolor GN=rplA PE=3 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 1.802e-21 Identity = 54/144 (37.50%), Postives = 81/144 (56.25%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++A++ K + + FD TVE RL + PRK + +VRGT+NLPHG K R +LI+E+ S G+LD + +T M ++ ++ ++L GLMPNPK GTVT DVA+AV + K G I+F++D Sbjct: 24 LEAVRLAKETSTSKFDGTVEVAFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDRAEAATAAGADIVGSDELIDEV-SKGRLDFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTPDVAKAVNDIKGGKIEFRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PARDP (50S ribosomal protein L1 OS=Paracoccus denitrificans (strain Pd 1222) GN=rplA PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.802e-21 Identity = 58/147 (39.46%), Postives = 80/147 (54.42%), Query Frame = 1 Query: 94 LDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L + +A+K VK NA A FDETVE + L + PR + +VRG + LP+G K VR L+E I SGK++ ++C +T MP + ++ KIL LMPNPK GTVT DV AV+ AK G ++FK + Sbjct: 21 LAVEEAVKLVKENASAKFDETVEIAMNLGVDPRHADQMVRGVVTLPNGTGKDVRVAVFARGPKADEAKAAGAEIVGAEDLMETI-QSGKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTMDVKAAVEAAKGGEVQFKAE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_THENN (50S ribosomal protein L1 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplA PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.353e-21 Identity = 60/158 (37.97%), Postives = 84/158 (53.16%), Query Frame = 1 Query: 64 ESKKKESRP-VLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 E+KK R DL +A++ VK A A FDET+E H++ I RK + +RGT+ LPHG K V+ L+E+I G LD + +T M + ++ KIL GLMP+PK GTVTN+VA AV+E K+G I+ + D Sbjct: 10 EAKKLVDRTKYYDLDEAVELVKKTATAKFDETIELHIQTGIDYRKPDQHIRGTIVLPHGTGKEVKVLVFARGEKAKEAQEAGADYVGAEDLVEKIEKEGFLDFDVAIATPDMMRVIGRLGKILGPRGLMPSPKSGTVTNEVAEAVKEFKKGRIEVRTD 167
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_STRAW (50S ribosomal protein L1 OS=Streptomyces avermitilis GN=rplA PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.353e-21 Identity = 54/144 (37.50%), Postives = 80/144 (55.56%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++A++ K + + FD TVE RL + PRK + +VRGT+NLPHG K R +LI+E+ S G+LD + +T M ++ ++ ++L GLMPNPK GTVT DV +AV E K G I+F++D Sbjct: 24 LEAVRLAKETSTSKFDGTVEVAFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDRAEAARAAGADIVGSDELIDEV-SKGRLDFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTPDVVKAVNEIKGGKIEFRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_THEP1 (50S ribosomal protein L1 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplA PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 3.073e-21 Identity = 58/146 (39.73%), Postives = 78/146 (53.42%), Query Frame = 1 Query: 97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 DL +AI+ VK A A FDET+E H++ I RK E +RGT+ LPHG K VR L+E+I G LD + +T M + ++ KIL GLMP+PK GTVT +VA AV+E K+G I+ + D Sbjct: 22 DLDEAIELVKKTATAKFDETIELHIQTGIDYRKPEQHIRGTVVLPHGTGKEVRVLVFAKGEAAKEALEAGADYVGAEDLVEKIEKEGFLDFDVAIATPDMMRVIGRLGKILGPRGLMPSPKSGTVTQEVAEAVKEFKKGRIEVRTD 167
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHISN (50S ribosomal protein L1 OS=Rhizobium sp. (strain NGR234) GN=rplA PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 3.073e-21 Identity = 53/148 (35.81%), Postives = 81/148 (54.73%), Query Frame = 1 Query: 91 VLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 V L +A+ VK A A FDET+E + L + PR + +VRG +NLP+G ++VR L+E I GK+D ++C +T MP + ++ K+L G+MPNPK GTVT DV AV+ +K G ++F+++ Sbjct: 20 VYGLTEAVTLVKERATAKFDETIEVAMNLGVDPRHADQMVRGVVNLPNGTGRSVRVAVFARGAKADEAKAAGADVVGAEDLVE-IVQGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVTAAVKSSKGGAVEFRVE 166 The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bpback to top |