CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4782 contig Ccv1_Contig4782:524..1061. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_OCHA4 (50S ribosomal protein L1 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rplA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.073e-21
Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            DL  AI  VK  A A FDET+E  + L + PR  + +VRG +NLP+G  + VR                        +L E I + GK+D ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV  +K G ++F+++
Sbjct:   22 DLSAAIGLVKERAVAKFDETIEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE-IVNGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTTDVAAAVAASKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_NITSB (50S ribosomal protein L1 OS=Nitratiruptor sp. (strain SB155-2) GN=rplA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.073e-21
Identity = 58/155 (37.42%), Postives = 83/155 (53.55%), Query Frame = 1
Query:   70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K E   +  + +A+K+VK    A FDETVE  +RL + PR  + +VRG++ LPHG  K VR                         L+E+I  +G +D +   +T   M  + KI +IL   GLMPNPK GTVT DV +AV+ AK G + F++D
Sbjct:   14 EKIEKGKIYSIDEAVKKVKELKSAKFDETVELALRLGVDPRHADQMVRGSVVLPHGTGKTVRVAVFAKGAKADEAKECGADIVGAEDLVEQI-QNGNIDFDIAIATPDMMGLVGKIGRILGPKGLMPNPKTGTVTMDVCQAVKNAKAGQVNFRVD 167          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_METRJ (50S ribosomal protein L1 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rplA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.073e-21
Identity = 57/152 (37.50%), Postives = 81/152 (53.29%), Query Frame = 1
Query:   79 ESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            E+  +  L +AIK VK  A A FDETVE  + L + PR  + +VRG  NLP+G  + VR                         L+E I   GK++ ++C +T   MP + ++ K+L   GLMPNPK GTVT DV  AV  AK G ++F+++
Sbjct:   16 EATKLYALDEAIKLVKERATAKFDETVEVSMNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADDARAAGADIVGAEDLLE-IVQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVAGAKGGSVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PELLD (50S ribosomal protein L1 OS=Pelodictyon luteolum (strain DSM 273) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.014e-21
Identity = 58/146 (39.73%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            DL+DA+ +VK      FD TV+  V+L + PR  + +VRGT+ LPHG  K V                         + IE+I  +G   V+   +T   M +L K++KIL   GLMPNPK GTVT DVA+AV+E K G I+F++D
Sbjct:   20 DLVDAVAKVKEITNVKFDATVDVAVKLGVDPRHADQVVRGTVMLPHGTGKTVSVLVVCKEAKAAEATEAGADLVGFEEYIEKI-QNGWTGVDVIIATPDVMGQLGKVAKILGPRGLMPNPKSGTVTMDVAKAVKEVKAGKIEFRVD 164          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PARL1 (50S ribosomal protein L1 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.014e-21
Identity = 55/145 (37.93%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L +A+K VK  A   FDET+E  + L + PR  + +VRG + LP G  + VR                         L E I  SGK+D ++C +T   MP + ++ K+L   GLMPNPK GTVT DVA AV+ AK G ++F+++
Sbjct:   23 LDEAVKMVKDRASVKFDETIEVAIALGVDPRHADQMVRGVVALPSGSGRTVRVAVFAKGDKADQARAAGADIVGDDDLAE-IVQSGKIDFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTPDVAEAVKAAKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_OLICO (50S ribosomal protein L1 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.014e-21
Identity = 53/145 (36.55%), Postives = 80/145 (55.17%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            + DAIK VK  A A FDET+E  + L + PR  + +VRG + LP+G  + +R                         L+E I   GK++ ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV+ AK G ++F+++
Sbjct:   22 IADAIKLVKERATAKFDETIEVAINLGVDPRHADQMVRGVVTLPNGTGRTLRVGVFARGAKADEAKAAGADVVGAEDLVE-IVQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVAGAVKGAKGGSVEFRVE 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_METS4 (50S ribosomal protein L1 OS=Methylobacterium sp. (strain 4-46) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.014e-21
Identity = 55/148 (37.16%), Postives = 78/148 (52.70%), Query Frame = 1
Query:   91 VLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            V  L DA+K +K  +KA FDET E  + L + PR  + +VRG  NLP+G  + VR                         L+E I   G +D ++C +T   MP + ++ K+L   GLMPNPK GTVT DV  AV  AK G ++F+++
Sbjct:   20 VYSLTDAVKMIKDRSKAKFDETFEISMNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADEARAAGADIVGAEDLLETI-QGGTIDFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVGAAKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_METPB (50S ribosomal protein L1 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.014e-21
Identity = 55/143 (38.46%), Postives = 78/143 (54.55%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +AIK VK+ A A FDETVE  + L + PR  + +VRG  NLP+G  + VR                         L+E I   GK++ ++C +T   MP + ++ K+L   GLMPNPK GTVT DV  AV  AK G ++F+++
Sbjct:   25 EAIKLVKSKASAKFDETVEISMNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADDAKAAGADIVGAEDLLE-IVQGGKIEFDRCIATPDLMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVAAAKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_METEP (50S ribosomal protein L1 OS=Methylobacterium extorquens (strain PA1) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.014e-21
Identity = 55/143 (38.46%), Postives = 78/143 (54.55%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +AIK VK+ A A FDETVE  + L + PR  + +VRG  NLP+G  + VR                         L+E I   GK++ ++C +T   MP + ++ K+L   GLMPNPK GTVT DV  AV  AK G ++F+++
Sbjct:   25 EAIKLVKSKASAKFDETVEISMNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADDARAAGADIVGAEDLLE-IVQGGKIEFDRCIATPDLMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVAAAKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_METC4 (50S ribosomal protein L1 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.014e-21
Identity = 55/143 (38.46%), Postives = 78/143 (54.55%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +AIK VK+ A A FDETVE  + L + PR  + +VRG  NLP+G  + VR                         L+E I   GK++ ++C +T   MP + ++ K+L   GLMPNPK GTVT DV  AV  AK G ++F+++
Sbjct:   25 EAIKLVKSKASAKFDETVEISMNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADDARAAGADIVGAEDLLE-IVQGGKIEFDRCIATPDLMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVAAAKGGAVEFRVE 166          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_OCHA43.073e-2137.6750S ribosomal protein L1 OS=Ochrobactrum anthropi ... [more]
RL1_NITSB3.073e-2137.4250S ribosomal protein L1 OS=Nitratiruptor sp. (str... [more]
RL1_METRJ3.073e-2137.5050S ribosomal protein L1 OS=Methylobacterium radio... [more]
RL1_PELLD4.014e-2139.7350S ribosomal protein L1 OS=Pelodictyon luteolum (... [more]
RL1_PARL14.014e-2137.9350S ribosomal protein L1 OS=Parvibaculum lavamenti... [more]
RL1_OLICO4.014e-2136.5550S ribosomal protein L1 OS=Oligotropha carboxidov... [more]
RL1_METS44.014e-2137.1650S ribosomal protein L1 OS=Methylobacterium sp. (... [more]
RL1_METPB4.014e-2138.4650S ribosomal protein L1 OS=Methylobacterium popul... [more]
RL1_METEP4.014e-2138.4650S ribosomal protein L1 OS=Methylobacterium extor... [more]
RL1_METC44.014e-2138.4650S ribosomal protein L1 OS=Methylobacterium chlor... [more]

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Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
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