CX288757
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_OCHA4 (50S ribosomal protein L1 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rplA PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 3.073e-21 Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = 1 Query: 97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 DL AI VK A A FDET+E + L + PR + +VRG +NLP+G + VR +L E I + GK+D ++C +T MP + ++ K+L G+MPNPK GTVT DVA AV +K G ++F+++ Sbjct: 22 DLSAAIGLVKERAVAKFDETIEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE-IVNGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTTDVAAAVAASKGGAVEFRVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_NITSB (50S ribosomal protein L1 OS=Nitratiruptor sp. (strain SB155-2) GN=rplA PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 3.073e-21 Identity = 58/155 (37.42%), Postives = 83/155 (53.55%), Query Frame = 1 Query: 70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +K E + + +A+K+VK A FDETVE +RL + PR + +VRG++ LPHG K VR L+E+I +G +D + +T M + KI +IL GLMPNPK GTVT DV +AV+ AK G + F++D Sbjct: 14 EKIEKGKIYSIDEAVKKVKELKSAKFDETVELALRLGVDPRHADQMVRGSVVLPHGTGKTVRVAVFAKGAKADEAKECGADIVGAEDLVEQI-QNGNIDFDIAIATPDMMGLVGKIGRILGPKGLMPNPKTGTVTMDVCQAVKNAKAGQVNFRVD 167
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_METRJ (50S ribosomal protein L1 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rplA PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 3.073e-21 Identity = 57/152 (37.50%), Postives = 81/152 (53.29%), Query Frame = 1 Query: 79 ESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 E+ + L +AIK VK A A FDETVE + L + PR + +VRG NLP+G + VR L+E I GK++ ++C +T MP + ++ K+L GLMPNPK GTVT DV AV AK G ++F+++ Sbjct: 16 EATKLYALDEAIKLVKERATAKFDETVEVSMNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADDARAAGADIVGAEDLLE-IVQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVAGAKGGSVEFRVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PELLD (50S ribosomal protein L1 OS=Pelodictyon luteolum (strain DSM 273) GN=rplA PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 4.014e-21 Identity = 58/146 (39.73%), Postives = 80/146 (54.79%), Query Frame = 1 Query: 97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 DL+DA+ +VK FD TV+ V+L + PR + +VRGT+ LPHG K V + IE+I +G V+ +T M +L K++KIL GLMPNPK GTVT DVA+AV+E K G I+F++D Sbjct: 20 DLVDAVAKVKEITNVKFDATVDVAVKLGVDPRHADQVVRGTVMLPHGTGKTVSVLVVCKEAKAAEATEAGADLVGFEEYIEKI-QNGWTGVDVIIATPDVMGQLGKVAKILGPRGLMPNPKSGTVTMDVAKAVKEVKAGKIEFRVD 164
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PARL1 (50S ribosomal protein L1 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplA PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 4.014e-21 Identity = 55/145 (37.93%), Postives = 78/145 (53.79%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L +A+K VK A FDET+E + L + PR + +VRG + LP G + VR L E I SGK+D ++C +T MP + ++ K+L GLMPNPK GTVT DVA AV+ AK G ++F+++ Sbjct: 23 LDEAVKMVKDRASVKFDETIEVAIALGVDPRHADQMVRGVVALPSGSGRTVRVAVFAKGDKADQARAAGADIVGDDDLAE-IVQSGKIDFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTPDVAEAVKAAKGGAVEFRVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_OLICO (50S ribosomal protein L1 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplA PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 4.014e-21 Identity = 53/145 (36.55%), Postives = 80/145 (55.17%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 + DAIK VK A A FDET+E + L + PR + +VRG + LP+G + +R L+E I GK++ ++C +T MP + ++ K+L G+MPNPK GTVT DVA AV+ AK G ++F+++ Sbjct: 22 IADAIKLVKERATAKFDETIEVAINLGVDPRHADQMVRGVVTLPNGTGRTLRVGVFARGAKADEAKAAGADVVGAEDLVE-IVQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVAGAVKGAKGGSVEFRVE 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_METS4 (50S ribosomal protein L1 OS=Methylobacterium sp. (strain 4-46) GN=rplA PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 4.014e-21 Identity = 55/148 (37.16%), Postives = 78/148 (52.70%), Query Frame = 1 Query: 91 VLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 V L DA+K +K +KA FDET E + L + PR + +VRG NLP+G + VR L+E I G +D ++C +T MP + ++ K+L GLMPNPK GTVT DV AV AK G ++F+++ Sbjct: 20 VYSLTDAVKMIKDRSKAKFDETFEISMNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADEARAAGADIVGAEDLLETI-QGGTIDFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVGAAKGGAVEFRVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_METPB (50S ribosomal protein L1 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplA PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 4.014e-21 Identity = 55/143 (38.46%), Postives = 78/143 (54.55%), Query Frame = 1 Query: 106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +AIK VK+ A A FDETVE + L + PR + +VRG NLP+G + VR L+E I GK++ ++C +T MP + ++ K+L GLMPNPK GTVT DV AV AK G ++F+++ Sbjct: 25 EAIKLVKSKASAKFDETVEISMNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADDAKAAGADIVGAEDLLE-IVQGGKIEFDRCIATPDLMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVAAAKGGAVEFRVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_METEP (50S ribosomal protein L1 OS=Methylobacterium extorquens (strain PA1) GN=rplA PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 4.014e-21 Identity = 55/143 (38.46%), Postives = 78/143 (54.55%), Query Frame = 1 Query: 106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +AIK VK+ A A FDETVE + L + PR + +VRG NLP+G + VR L+E I GK++ ++C +T MP + ++ K+L GLMPNPK GTVT DV AV AK G ++F+++ Sbjct: 25 EAIKLVKSKASAKFDETVEISMNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADDARAAGADIVGAEDLLE-IVQGGKIEFDRCIATPDLMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVAAAKGGAVEFRVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_METC4 (50S ribosomal protein L1 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rplA PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 4.014e-21 Identity = 55/143 (38.46%), Postives = 78/143 (54.55%), Query Frame = 1 Query: 106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +AIK VK+ A A FDETVE + L + PR + +VRG NLP+G + VR L+E I GK++ ++C +T MP + ++ K+L GLMPNPK GTVT DV AV AK G ++F+++ Sbjct: 25 EAIKLVKSKASAKFDETVEISMNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADDARAAGADIVGAEDLLE-IVQGGKIEFDRCIATPDLMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVAAAKGGAVEFRVE 166 The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bpback to top |