CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4782 contig Ccv1_Contig4782:524..1061. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_FERNB (50S ribosomal protein L1 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.014e-21
Identity = 56/155 (36.13%), Postives = 83/155 (53.55%), Query Frame = 1
Query:   70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K  +S     L +A++ +K  A A FDETVE H++  I  RK+E  +R T++LPHG  K+VR                        +L ++IA+ G +D +   +T   M  + K+ K+L   GLMPNPK GTVT D+A AV E K+G ++ + D
Sbjct:   13 KLVDSEKAYTLDEAVELLKKTATAKFDETVEFHIKTNIDYRKSEQNIRSTISLPHGTGKSVRVLVFAKGEKAEEAKQAGADYVGAEELADKIANEGFVDFDVAIATPDMMKVIGKLGKVLGPRGLMPNPKTGTVTEDIAAAVSEFKKGKVEVRTD 167          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SYNS9 (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9902) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.242e-21
Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++AI  VK NA A FDET+EAHVRL I P+ T+  +R T+ LP+G  + VR                         L+E I S G+++ +   +T   MP++ K+ ++L   GLMPNPK GTVT D+A A+++ K G ++F+ D
Sbjct:   23 LEAIALVKDNANAKFDETMEAHVRLGIDPKYTDQQLRTTVALPNGTGQTVRIAVVTSGEKVAAAKAAGAELAGDEDLVEAI-SKGEMNFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAIKDFKAGKLEFRAD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHIME (50S ribosomal protein L1 OS=Rhizobium meliloti GN=rplA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.242e-21
Identity = 52/145 (35.86%), Postives = 81/145 (55.86%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L +A+  VK  A A FDET+E  + L + PR  + +VRG +NLP+G  ++VR                        +L+E I   GK+D ++C +T   MP + ++ K+L   G+MPNPK GTVT DV  AV+ +K G ++F+++
Sbjct:   23 LTEAVTLVKERATAKFDETIEVAMNLGVDPRHADQMVRGVVNLPNGTGRSVRVAVFARGAKADEAKAAGADVVGAEELVE-IVQGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVTGAVKASKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_THESQ (50S ribosomal protein L1 OS=Thermotoga sp. (strain RQ2) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21
Identity = 57/146 (39.04%), Postives = 78/146 (53.42%), Query Frame = 1
Query:   97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            DL +AI+ VK  A A FDET+E H++  I  RK E  +RGT+ LPHG  K V+                         L+E+I   G LD +   +T   M  + ++ KIL   GLMP+PK GTVT +VA AV+E K+G I+ + D
Sbjct:   22 DLDEAIELVKKTATAKFDETIELHIQTGIDYRKPEQHIRGTIVLPHGTGKEVKVLVFAKGEKAKEALEAGADYVGAEDLVEKIEKEGFLDFDVAIATPDMMRIIGRLGKILGPRGLMPSPKSGTVTQEVAEAVKEFKKGRIEVRTD 167          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_THEMA (50S ribosomal protein L1 OS=Thermotoga maritima GN=rplA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21
Identity = 57/146 (39.04%), Postives = 78/146 (53.42%), Query Frame = 1
Query:   97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            DL +AI+ VK  A A FDET+E H++  I  RK E  +RGT+ LPHG  K V+                         L+E+I   G LD +   +T   M  + ++ KIL   GLMP+PK GTVT +VA AV+E K+G I+ + D
Sbjct:   22 DLDEAIELVKKTATAKFDETIELHIQTGIDYRKPEQHIRGTIVLPHGTGKEVKVLVFAKGEKAKEALEAGADYVGAEDLVEKIEKEGFLDFDVAIATPDMMRIIGRLGKILGPRGLMPSPKSGTVTQEVAEAVKEFKKGRIEVRTD 167          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_NAUPA (50S ribosomal protein L1 OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21
Identity = 58/157 (36.94%), Postives = 85/157 (54.14%), Query Frame = 1
Query:   64 ESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            E  KK  + V +L +A ++VK    A FDETVE  ++L + PR  + ++RG++ LPHG  K V+                        +++E I  +G LD +   +T   M +L +  KIL   GLMPNPK GTVT DVA+AV+ AK G + F++D
Sbjct:   11 ELLKKIDKDVYNLKEAAEKVKELKSAKFDETVELALKLGVDPRHADQMIRGSVVLPHGTGKTVKVAVLAKGAKADEAKEAGADIVGEEEVLEMI-QNGNLDFDILIATPDMMGKLGRFGKILGPKGLMPNPKTGTVTMDVAQAVKNAKAGQVNFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MESSB (50S ribosomal protein L1 OS=Mesorhizobium sp. (strain BNC1) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21
Identity = 51/145 (35.17%), Postives = 82/145 (56.55%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L +A+K +K  A A FDET+E  + L + PR  + +VRG +NLP+G  ++VR                         L+E +   G+++ ++C +T   MP + ++ K+L   GLMPNPK GTVT DVA AV+ +K G ++F+++
Sbjct:   23 LDEAVKVIKERATAKFDETIEVAMNLGVDPRHADQMVRGVVNLPNGTGRSVRVAVFAKGDKADEAKAAGADIVGAEDLVETV-QKGEINFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTTDVAAAVKASKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BRUSU (50S ribosomal protein L1 OS=Brucella suis GN=rplA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21
Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            DL  AI  VK  A A FDETVE  + L + PR  + +VRG +NLP+G  + VR                        +L E I + GK++ ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV  +K G ++F+++
Sbjct:   22 DLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE-IVNGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTTDVAAAVAASKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BRUSI (50S ribosomal protein L1 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21
Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            DL  AI  VK  A A FDETVE  + L + PR  + +VRG +NLP+G  + VR                        +L E I + GK++ ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV  +K G ++F+++
Sbjct:   22 DLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE-IVNGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTTDVAAAVAASKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BRUO2 (50S ribosomal protein L1 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21
Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            DL  AI  VK  A A FDETVE  + L + PR  + +VRG +NLP+G  + VR                        +L E I + GK++ ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV  +K G ++F+++
Sbjct:   22 DLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE-IVNGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTTDVAAAVAASKGGAVEFRVE 166          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_FERNB4.014e-2136.1350S ribosomal protein L1 OS=Fervidobacterium nodos... [more]
RL1_SYNS95.242e-2138.1950S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_RHIME5.242e-2135.8650S ribosomal protein L1 OS=Rhizobium meliloti GN=... [more]
RL1_THESQ6.846e-2139.0450S ribosomal protein L1 OS=Thermotoga sp. (strain... [more]
RL1_THEMA6.846e-2139.0450S ribosomal protein L1 OS=Thermotoga maritima GN... [more]
RL1_NAUPA6.846e-2136.9450S ribosomal protein L1 OS=Nautilia profundicola ... [more]
RL1_MESSB6.846e-2135.1750S ribosomal protein L1 OS=Mesorhizobium sp. (str... [more]
RL1_BRUSU6.846e-2137.6750S ribosomal protein L1 OS=Brucella suis GN=rplA ... [more]
RL1_BRUSI6.846e-2137.6750S ribosomal protein L1 OS=Brucella suis (strain ... [more]
RL1_BRUO26.846e-2137.6750S ribosomal protein L1 OS=Brucella ovis (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
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