CX288757
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_FERNB (50S ribosomal protein L1 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplA PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 4.014e-21 Identity = 56/155 (36.13%), Postives = 83/155 (53.55%), Query Frame = 1 Query: 70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 K +S L +A++ +K A A FDETVE H++ I RK+E +R T++LPHG K+VR +L ++IA+ G +D + +T M + K+ K+L GLMPNPK GTVT D+A AV E K+G ++ + D Sbjct: 13 KLVDSEKAYTLDEAVELLKKTATAKFDETVEFHIKTNIDYRKSEQNIRSTISLPHGTGKSVRVLVFAKGEKAEEAKQAGADYVGAEELADKIANEGFVDFDVAIATPDMMKVIGKLGKVLGPRGLMPNPKTGTVTEDIAAAVSEFKKGKVEVRTD 167
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SYNS9 (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9902) GN=rplA PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 5.242e-21 Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++AI VK NA A FDET+EAHVRL I P+ T+ +R T+ LP+G + VR L+E I S G+++ + +T MP++ K+ ++L GLMPNPK GTVT D+A A+++ K G ++F+ D Sbjct: 23 LEAIALVKDNANAKFDETMEAHVRLGIDPKYTDQQLRTTVALPNGTGQTVRIAVVTSGEKVAAAKAAGAELAGDEDLVEAI-SKGEMNFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAIKDFKAGKLEFRAD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHIME (50S ribosomal protein L1 OS=Rhizobium meliloti GN=rplA PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 5.242e-21 Identity = 52/145 (35.86%), Postives = 81/145 (55.86%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L +A+ VK A A FDET+E + L + PR + +VRG +NLP+G ++VR +L+E I GK+D ++C +T MP + ++ K+L G+MPNPK GTVT DV AV+ +K G ++F+++ Sbjct: 23 LTEAVTLVKERATAKFDETIEVAMNLGVDPRHADQMVRGVVNLPNGTGRSVRVAVFARGAKADEAKAAGADVVGAEELVE-IVQGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVTGAVKASKGGAVEFRVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_THESQ (50S ribosomal protein L1 OS=Thermotoga sp. (strain RQ2) GN=rplA PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21 Identity = 57/146 (39.04%), Postives = 78/146 (53.42%), Query Frame = 1 Query: 97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 DL +AI+ VK A A FDET+E H++ I RK E +RGT+ LPHG K V+ L+E+I G LD + +T M + ++ KIL GLMP+PK GTVT +VA AV+E K+G I+ + D Sbjct: 22 DLDEAIELVKKTATAKFDETIELHIQTGIDYRKPEQHIRGTIVLPHGTGKEVKVLVFAKGEKAKEALEAGADYVGAEDLVEKIEKEGFLDFDVAIATPDMMRIIGRLGKILGPRGLMPSPKSGTVTQEVAEAVKEFKKGRIEVRTD 167
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_THEMA (50S ribosomal protein L1 OS=Thermotoga maritima GN=rplA PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21 Identity = 57/146 (39.04%), Postives = 78/146 (53.42%), Query Frame = 1 Query: 97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 DL +AI+ VK A A FDET+E H++ I RK E +RGT+ LPHG K V+ L+E+I G LD + +T M + ++ KIL GLMP+PK GTVT +VA AV+E K+G I+ + D Sbjct: 22 DLDEAIELVKKTATAKFDETIELHIQTGIDYRKPEQHIRGTIVLPHGTGKEVKVLVFAKGEKAKEALEAGADYVGAEDLVEKIEKEGFLDFDVAIATPDMMRIIGRLGKILGPRGLMPSPKSGTVTQEVAEAVKEFKKGRIEVRTD 167
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_NAUPA (50S ribosomal protein L1 OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=rplA PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21 Identity = 58/157 (36.94%), Postives = 85/157 (54.14%), Query Frame = 1 Query: 64 ESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 E KK + V +L +A ++VK A FDETVE ++L + PR + ++RG++ LPHG K V+ +++E I +G LD + +T M +L + KIL GLMPNPK GTVT DVA+AV+ AK G + F++D Sbjct: 11 ELLKKIDKDVYNLKEAAEKVKELKSAKFDETVELALKLGVDPRHADQMIRGSVVLPHGTGKTVKVAVLAKGAKADEAKEAGADIVGEEEVLEMI-QNGNLDFDILIATPDMMGKLGRFGKILGPKGLMPNPKTGTVTMDVAQAVKNAKAGQVNFRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MESSB (50S ribosomal protein L1 OS=Mesorhizobium sp. (strain BNC1) GN=rplA PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21 Identity = 51/145 (35.17%), Postives = 82/145 (56.55%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L +A+K +K A A FDET+E + L + PR + +VRG +NLP+G ++VR L+E + G+++ ++C +T MP + ++ K+L GLMPNPK GTVT DVA AV+ +K G ++F+++ Sbjct: 23 LDEAVKVIKERATAKFDETIEVAMNLGVDPRHADQMVRGVVNLPNGTGRSVRVAVFAKGDKADEAKAAGADIVGAEDLVETV-QKGEINFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTTDVAAAVKASKGGAVEFRVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BRUSU (50S ribosomal protein L1 OS=Brucella suis GN=rplA PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21 Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = 1 Query: 97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 DL AI VK A A FDETVE + L + PR + +VRG +NLP+G + VR +L E I + GK++ ++C +T MP + ++ K+L G+MPNPK GTVT DVA AV +K G ++F+++ Sbjct: 22 DLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE-IVNGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTTDVAAAVAASKGGAVEFRVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BRUSI (50S ribosomal protein L1 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rplA PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21 Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = 1 Query: 97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 DL AI VK A A FDETVE + L + PR + +VRG +NLP+G + VR +L E I + GK++ ++C +T MP + ++ K+L G+MPNPK GTVT DVA AV +K G ++F+++ Sbjct: 22 DLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE-IVNGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTTDVAAAVAASKGGAVEFRVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BRUO2 (50S ribosomal protein L1 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplA PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21 Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = 1 Query: 97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 DL AI VK A A FDETVE + L + PR + +VRG +NLP+G + VR +L E I + GK++ ++C +T MP + ++ K+L G+MPNPK GTVT DVA AV +K G ++F+++ Sbjct: 22 DLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE-IVNGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTTDVAAAVAASKGGAVEFRVE 166 The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bpback to top |