CX288757
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_DESVV (50S ribosomal protein L1 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplA PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 3.887e-16 Identity = 48/143 (33.57%), Postives = 75/143 (52.45%), Query Frame = 1 Query: 106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 DA+ + A A A FDETV+ + L + P+ ++ +VRG + +P+G K VR +L+ +I G LD +K +T M + +I ++L GLMPN K GTVT D+ A++E K G ++FK+D Sbjct: 25 DAVAKSLAAAPAKFDETVDVAICLGVDPKYSDQMVRGAVTMPNGLGKTVRVAVFCKGEKEAEAKAAGADVAGAEELVAKI-KEGWLDFDKAIATPDVMALVGQIGRVLGPRGLMPNAKTGTVTFDITTAIKEMKAGRVEFKVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_DESVH (50S ribosomal protein L1 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplA PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 3.887e-16 Identity = 48/143 (33.57%), Postives = 75/143 (52.45%), Query Frame = 1 Query: 106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 DA+ + A A A FDETV+ + L + P+ ++ +VRG + +P+G K VR +L+ +I G LD +K +T M + +I ++L GLMPN K GTVT D+ A++E K G ++FK+D Sbjct: 25 DAVAKSLAAAPAKFDETVDVAICLGVDPKYSDQMVRGAVTMPNGLGKTVRVAVFCKGEKEAEAKAAGADVAGAEELVAKI-KEGWLDFDKAIATPDVMALVGQIGRVLGPRGLMPNAKTGTVTFDITTAIKEMKAGRVEFKVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_AMOA5 (50S ribosomal protein L1 OS=Amoebophilus asiaticus (strain 5a2) GN=rplA PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 3.887e-16 Identity = 49/145 (33.79%), Postives = 76/145 (52.41%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L +AI+ V+ FD +++ V L + PRK + +VRGT+ LPHG K R I++I G +D++ + + M ++ ++ KIL GLMPNPK GTVT ++A+AVQ K G I++K+D Sbjct: 23 LEEAIELVQKITYTKFDASIDIAVHLGVDPRKADQMVRGTVVLPHGTGKNKRILVLCTPEKEKEAREAGADHVGLDDYIKKI-EEGWVDIDVIITMPEIMAKVGRLGKILGPRGLMPNPKTGTVTVEIAKAVQAVKSGKIEYKVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RK1_RHDSA (50S ribosomal protein L1, chloroplastic OS=Rhodomonas salina GN=rpl1 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 3.887e-16 Identity = 53/160 (33.12%), Postives = 77/160 (48.12%), Query Frame = 1 Query: 55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +K K E RP +A+ +K A A F ET EAH+ L I + + +R T+ LP G K VR LI+ I G LD ++ +T MP + K+ K+L GLMP+PK GTVT D+ A+ E K+G ++++ D Sbjct: 8 VKKIQTKVELRPYKGT-EALNLLKELATAKFTETAEAHISLKIDTKYADQQLRTTLVLPKGTGKKVRIAVVAQGEKINEALAAGADLAGAEDLIQNIMK-GDLDFDRLIATPDMMPAIAKLGKVLGPRGLMPSPKSGTVTADIKEAIDEFKKGKLEYRAD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHOBA (50S ribosomal protein L1 OS=Rhodopirellula baltica GN=rplA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.077e-16 Identity = 47/154 (30.52%), Postives = 76/154 (49.35%), Query Frame = 1 Query: 73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +K+ + +L L A++ +K FD+TVE H+RL + P + + I+RG++ LPHG K R L ++I G D + C + M + + ++L GLMP+P+ GTVT DV + V E K G ++F+ D Sbjct: 13 EKQPKEMLPLGKAVEVLKTYDATKFDQTVEVHMRLGVDPNQADQIIRGSLVLPHGIGKTQRVIVFAKGDAAKAAEEAGADEVGQEDLAKKI-KDGWTDFDVCIAAPDMMGLVGPLGRVLGPRGLMPSPRAGTVTPDVGKVVSEYKAGKVEFRND 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_NITEU (50S ribosomal protein L1 OS=Nitrosomonas europaea GN=rplA PE=3 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 5.077e-16 Identity = 50/155 (32.26%), Postives = 81/155 (52.26%), Query Frame = 1 Query: 70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +K + + L+DA+ VK A A FDE+V+ + L I RK++ +VRG++ LP G K+VR L E + +G+++ + ++ M + ++ +IL GLMPNPK GTVT DV A++ AK G ++F+ D Sbjct: 13 QKIDRSQLYSLVDALALVKETAVAKFDESVDIAINLGIDVRKSDQVVRGSVVLPSGTGKSVRVAVFAQGDKAKEALDAGADIVGFEDLAERV-KAGEINFDLAIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTVDVINAIRNAKAGQVQFRAD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CHLFF (50S ribosomal protein L1 OS=Chlamydophila felis (strain Fe/C-56) GN=rplA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.077e-16 Identity = 47/145 (32.41%), Postives = 75/145 (51.72%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L +AI +K FD+TV+ ++L I P+K++ +RG+++LP+G K +R L+E+I G +D + +T M + K+ K+L LMP PK GTVT DV +A+ E ++G I+FK D Sbjct: 23 LQEAIDILKQCPTVRFDQTVDVSIKLGIDPKKSDQQIRGSVSLPNGTGKTLRILVFAAGEKAKEALDAGADFVGSDDLVEKI-KGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKAGTVTTDVVKAIAELRKGKIEFKAD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BURVG (50S ribosomal protein L1 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rplA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.077e-16 Identity = 51/154 (33.12%), Postives = 83/154 (53.90%), Query Frame = 1 Query: 73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 K + + + + DA+ VK A A F+E+++ V+L I +K++ +VRG++ LP G K+VR L E+I +G++D + ++ M + + +IL GLMPNPK GTVT DVA AV+ AK G ++F++D Sbjct: 14 KVDRQKLYAIEDALALVKECASAKFNESIDVAVQLGIDAKKSDQVVRGSVVLPAGTGKSVRVAVFAQGEKAEQARAAGAEIVGMEDLAEQI-KAGQMDFDIVIASPDTMRIVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQFRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BACLD (50S ribosomal protein L1 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.077e-16 Identity = 51/146 (34.93%), Postives = 72/146 (49.32%), Query Frame = 1 Query: 97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 D+ +AI+ VK A FD TVEA RL + PRK + +RG + LP+G K R I +I G D + +T M + KI ++L GLMPNPK GTVT +V +AV E K G +++++D Sbjct: 22 DVNEAIELVKKTNTAKFDATVEAAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGDADYINKI-QQGWFDFDVIVATPDMMGEVGKIGRVLGPKGLMPNPKTGTVTFEVEKAVNEIKAGKVEYRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ANOFW (50S ribosomal protein L1 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rplA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.077e-16 Identity = 51/145 (35.17%), Postives = 71/145 (48.97%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 + +AI+ VK A FD TVE RL + P+K + +RG + LPHG K R I +I G + + +T M + KI +IL GLMPNPK GTVT DVA+AV E K G +++++D Sbjct: 23 VQEAIELVKKTNVAKFDATVEVAFRLGVDPKKADQQIRGAVVLPHGTGKVRRVLVLAKGEKAKEAEAAGADYVGDTDYINKI-QQGWFEFDVIVATPDMMGEVGKIGRILGPKGLMPNPKTGTVTFDVAKAVNEIKAGKVEYRVD 166 The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bpback to top |