CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_DESVV (50S ribosomal protein L1 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.887e-16
Identity = 48/143 (33.57%), Postives = 75/143 (52.45%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            DA+ +  A A A FDETV+  + L + P+ ++ +VRG + +P+G  K VR                        +L+ +I   G LD +K  +T   M  + +I ++L   GLMPN K GTVT D+  A++E K G ++FK+D
Sbjct:   25 DAVAKSLAAAPAKFDETVDVAICLGVDPKYSDQMVRGAVTMPNGLGKTVRVAVFCKGEKEAEAKAAGADVAGAEELVAKI-KEGWLDFDKAIATPDVMALVGQIGRVLGPRGLMPNAKTGTVTFDITTAIKEMKAGRVEFKVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_DESVH (50S ribosomal protein L1 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.887e-16
Identity = 48/143 (33.57%), Postives = 75/143 (52.45%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            DA+ +  A A A FDETV+  + L + P+ ++ +VRG + +P+G  K VR                        +L+ +I   G LD +K  +T   M  + +I ++L   GLMPN K GTVT D+  A++E K G ++FK+D
Sbjct:   25 DAVAKSLAAAPAKFDETVDVAICLGVDPKYSDQMVRGAVTMPNGLGKTVRVAVFCKGEKEAEAKAAGADVAGAEELVAKI-KEGWLDFDKAIATPDVMALVGQIGRVLGPRGLMPNAKTGTVTFDITTAIKEMKAGRVEFKVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_AMOA5 (50S ribosomal protein L1 OS=Amoebophilus asiaticus (strain 5a2) GN=rplA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.887e-16
Identity = 49/145 (33.79%), Postives = 76/145 (52.41%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L +AI+ V+      FD +++  V L + PRK + +VRGT+ LPHG  K  R                          I++I   G +D++   +  + M ++ ++ KIL   GLMPNPK GTVT ++A+AVQ  K G I++K+D
Sbjct:   23 LEEAIELVQKITYTKFDASIDIAVHLGVDPRKADQMVRGTVVLPHGTGKNKRILVLCTPEKEKEAREAGADHVGLDDYIKKI-EEGWVDIDVIITMPEIMAKVGRLGKILGPRGLMPNPKTGTVTVEIAKAVQAVKSGKIEYKVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RK1_RHDSA (50S ribosomal protein L1, chloroplastic OS=Rhodomonas salina GN=rpl1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.887e-16
Identity = 53/160 (33.12%), Postives = 77/160 (48.12%), Query Frame = 1
Query:   55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K    K E RP     +A+  +K  A A F ET EAH+ L I  +  +  +R T+ LP G  K VR                         LI+ I   G LD ++  +T   MP + K+ K+L   GLMP+PK GTVT D+  A+ E K+G ++++ D
Sbjct:    8 VKKIQTKVELRPYKGT-EALNLLKELATAKFTETAEAHISLKIDTKYADQQLRTTLVLPKGTGKKVRIAVVAQGEKINEALAAGADLAGAEDLIQNIMK-GDLDFDRLIATPDMMPAIAKLGKVLGPRGLMPSPKSGTVTADIKEAIDEFKKGKLEYRAD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHOBA (50S ribosomal protein L1 OS=Rhodopirellula baltica GN=rplA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.077e-16
Identity = 47/154 (30.52%), Postives = 76/154 (49.35%), Query Frame = 1
Query:   73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K+ + +L L  A++ +K      FD+TVE H+RL + P + + I+RG++ LPHG  K  R                         L ++I   G  D + C +    M  +  + ++L   GLMP+P+ GTVT DV + V E K G ++F+ D
Sbjct:   13 EKQPKEMLPLGKAVEVLKTYDATKFDQTVEVHMRLGVDPNQADQIIRGSLVLPHGIGKTQRVIVFAKGDAAKAAEEAGADEVGQEDLAKKI-KDGWTDFDVCIAAPDMMGLVGPLGRVLGPRGLMPSPRAGTVTPDVGKVVSEYKAGKVEFRND 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_NITEU (50S ribosomal protein L1 OS=Nitrosomonas europaea GN=rplA PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.077e-16
Identity = 50/155 (32.26%), Postives = 81/155 (52.26%), Query Frame = 1
Query:   70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K +   +  L+DA+  VK  A A FDE+V+  + L I  RK++ +VRG++ LP G  K+VR                         L E +  +G+++ +   ++   M  + ++ +IL   GLMPNPK GTVT DV  A++ AK G ++F+ D
Sbjct:   13 QKIDRSQLYSLVDALALVKETAVAKFDESVDIAINLGIDVRKSDQVVRGSVVLPSGTGKSVRVAVFAQGDKAKEALDAGADIVGFEDLAERV-KAGEINFDLAIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTVDVINAIRNAKAGQVQFRAD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CHLFF (50S ribosomal protein L1 OS=Chlamydophila felis (strain Fe/C-56) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.077e-16
Identity = 47/145 (32.41%), Postives = 75/145 (51.72%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L +AI  +K      FD+TV+  ++L I P+K++  +RG+++LP+G  K +R                         L+E+I   G +D +   +T   M  + K+ K+L    LMP PK GTVT DV +A+ E ++G I+FK D
Sbjct:   23 LQEAIDILKQCPTVRFDQTVDVSIKLGIDPKKSDQQIRGSVSLPNGTGKTLRILVFAAGEKAKEALDAGADFVGSDDLVEKI-KGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKAGTVTTDVVKAIAELRKGKIEFKAD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BURVG (50S ribosomal protein L1 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.077e-16
Identity = 51/154 (33.12%), Postives = 83/154 (53.90%), Query Frame = 1
Query:   73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K + + +  + DA+  VK  A A F+E+++  V+L I  +K++ +VRG++ LP G  K+VR                         L E+I  +G++D +   ++   M  +  + +IL   GLMPNPK GTVT DVA AV+ AK G ++F++D
Sbjct:   14 KVDRQKLYAIEDALALVKECASAKFNESIDVAVQLGIDAKKSDQVVRGSVVLPAGTGKSVRVAVFAQGEKAEQARAAGAEIVGMEDLAEQI-KAGQMDFDIVIASPDTMRIVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BACLD (50S ribosomal protein L1 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.077e-16
Identity = 51/146 (34.93%), Postives = 72/146 (49.32%), Query Frame = 1
Query:   97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            D+ +AI+ VK    A FD TVEA  RL + PRK +  +RG + LP+G  K  R                          I +I   G  D +   +T   M  + KI ++L   GLMPNPK GTVT +V +AV E K G +++++D
Sbjct:   22 DVNEAIELVKKTNTAKFDATVEAAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGDADYINKI-QQGWFDFDVIVATPDMMGEVGKIGRVLGPKGLMPNPKTGTVTFEVEKAVNEIKAGKVEYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ANOFW (50S ribosomal protein L1 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.077e-16
Identity = 51/145 (35.17%), Postives = 71/145 (48.97%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            + +AI+ VK    A FD TVE   RL + P+K +  +RG + LPHG  K  R                          I +I   G  + +   +T   M  + KI +IL   GLMPNPK GTVT DVA+AV E K G +++++D
Sbjct:   23 VQEAIELVKKTNVAKFDATVEVAFRLGVDPKKADQQIRGAVVLPHGTGKVRRVLVLAKGEKAKEAEAAGADYVGDTDYINKI-QQGWFEFDVIVATPDMMGEVGKIGRILGPKGLMPNPKTGTVTFDVAKAVNEIKAGKVEYRVD 166          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_DESVV3.887e-1633.5750S ribosomal protein L1 OS=Desulfovibrio vulgaris... [more]
RL1_DESVH3.887e-1633.5750S ribosomal protein L1 OS=Desulfovibrio vulgaris... [more]
RL1_AMOA53.887e-1633.7950S ribosomal protein L1 OS=Amoebophilus asiaticus... [more]
RK1_RHDSA3.887e-1633.1350S ribosomal protein L1, chloroplastic OS=Rhodomo... [more]
RL1_RHOBA5.077e-1630.5250S ribosomal protein L1 OS=Rhodopirellula baltica... [more]
RL1_NITEU5.077e-1632.2650S ribosomal protein L1 OS=Nitrosomonas europaea ... [more]
RL1_CHLFF5.077e-1632.4150S ribosomal protein L1 OS=Chlamydophila felis (s... [more]
RL1_BURVG5.077e-1633.1250S ribosomal protein L1 OS=Burkholderia vietnamie... [more]
RL1_BACLD5.077e-1634.9350S ribosomal protein L1 OS=Bacillus licheniformis... [more]
RL1_ANOFW5.077e-1635.1750S ribosomal protein L1 OS=Anoxybacillus flavithe... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
back to top