CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RK1_GUITH (50S ribosomal protein L1, chloroplastic OS=Guillardia theta GN=rpl1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.077e-16
Identity = 48/154 (31.17%), Postives = 80/154 (51.95%), Query Frame = 1
Query:   73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K E++P    ++A+  +K  A A F E+ EAH+ L +  +  +  +R T+ LP G  K +R                         L+++I   G LD ++  +T   MP + K+ K+L   GLMP+PK GTVT+DV  A++E K+G ++++ D
Sbjct:   14 KIENKPY-KAIEALNLLKDTATAKFVESAEAHIALKLDTKYADQQLRTTLVLPKGTGKKIRIAVIAEGEKATEAINAGADLAGSTDLVQDIMK-GMLDFDRLIATPDMMPLIAKLGKVLGPRGLMPSPKSGTVTSDVKSAIEEFKKGKLEYRAD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.077e-16
Identity = 50/155 (32.26%), Postives = 80/155 (51.61%), Query Frame = 1
Query:   70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K +E++   D+  AI  +K  A   F E+VEAH RL I P+  +  +R T++LP G  + V                          LIE+I   G ++ +K  ++   M ++  + KIL   GLMPNPK GTVT ++ +A++E K+G ++F+ D
Sbjct:  121 KLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQI-KGGFMEFDKLIASPDMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRAD 274          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SPHAL (50S ribosomal protein L1 OS=Sphingopyxis alaskensis GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 52/154 (33.77%), Postives = 81/154 (52.60%), Query Frame = 1
Query:   73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K +++ +  + +AIK V+  A A FDET+E  + L + PR  + +VRG + LP G  K V+                         L+E++ + G LD  +  +T   M  + ++ K L   GLMPNPK GTVT +VA AV+ AK G I+F+++
Sbjct:   14 KVDAQKLHGVDEAIKLVRELATAKFDETLEIAMNLGVDPRHADQMVRGVVTLPAGTGKDVKVAVFARGDNAEKALAAGADKVGAEDLMEDMLA-GNLDYGRVIATPDMMGIVGRLGKTLGPKGLMPNPKLGTVTPNVAEAVKAAKGGQIEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_NITMU (50S ribosomal protein L1 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 52/160 (32.50%), Postives = 81/160 (50.62%), Query Frame = 1
Query:   55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K  S+K +      L DA+  V+  A A FDE+++  V L I  +K++  VRG++ LP G  K VR                         L E+I  +G ++ +   ++   M  + ++ +IL   GLMPNPK GTVT DVA AV+ AK G ++++ D
Sbjct:    8 LKAISEKVDRTKYYPLQDALNLVRETAIAKFDESIDVAVNLGIDAKKSDQAVRGSVVLPAGTGKTVRVAVFAQGDKAREAAAAGADIVGFEDLAEQI-KAGNIEFDVAIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPDVAGAVKNAKAGQVQYRAD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MYCCT (50S ribosomal protein L1 OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 55/159 (34.59%), Postives = 72/159 (45.28%), Query Frame = 1
Query:   58 KPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K    K E   V  L  A+   K  A   FD TVE    L I PRK +  +RG + LP G  K  R                        +LI  I +    D +   +T + M +L  I KIL   GLMPNPK GTVT DVA+AV + K+G ++++ D
Sbjct:    9 KEALSKVEKNKVYPLNKALDLAKQTATTKFDSTVEVAFNLNIDPRKADQQIRGAVVLPAGTGKTQRVLVLTNTKTKEAEQAKADIVGGE-ELINRIKNENWFDFDIIVATPEMMAKLGAIGKILGPKGLMPNPKTGTVTMDVAKAVDDIKKGKVEYRAD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_LACH4 (50S ribosomal protein L1 OS=Lactobacillus helveticus (strain DPC 4571) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 46/156 (29.49%), Postives = 81/156 (51.92%), Query Frame = 1
Query:   67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +KK +S  +  + +A+K VK  + A FD TV+    L++ P++ +  +RG++ LP+G  K                            L+++I   G LD +   +T   M ++ ++ +IL   GLMPNPK GTVT D+ +AV+  K G +++++D
Sbjct:   12 AKKVDSNKLYSVAEAMKLVKETSYANFDATVDVAYNLSVDPKQADQQIRGSLVLPNGTGKTQTVVVFAEGPQADQAKAAGADFVGSDDLVQKI-QDGWLDFDVVVATPMMMAKVGRLGRILGPKGLMPNPKTGTVTMDIEKAVKNVKAGQVEYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_LACAC (50S ribosomal protein L1 OS=Lactobacillus acidophilus GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 45/156 (28.85%), Postives = 81/156 (51.92%), Query Frame = 1
Query:   67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +KK +S  +  + +A+K VK  + A FD T++    L++ P++ +  +RG++ LP+G  K                            L+E+I   G LD +   +T   M ++ ++ ++L   GLMPNPK GTVT D+ +AV+  K G +++++D
Sbjct:   12 AKKVDSNKLYSVAEAMKLVKETSYANFDATIDVAYNLSVDPKQADQQIRGSIVLPNGTGKTQTVVVFAEGPQAEQAKAAGADFVGSDDLVEKI-QGGWLDFDVVVATPMMMAKVGRLGRVLGPKGLMPNPKTGTVTMDIEKAVKNVKAGQVEYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CELJU (50S ribosomal protein L1 OS=Cellvibrio japonicus (strain Ueda107) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = 1
Query:   67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++K +      + DA+  +K  +   F ETV+  + L I PRK++  VRG   LPHG+ K VR                        +L  EI  +GK+D +   ++   M  + ++ ++L   GLMPNPK GTVT DV  AV+ AK G ++++ +
Sbjct:   12 NEKVDGSKQYSIDDAVALLKELSNVKFAETVDVSINLGIDPRKSDQSVRGATTLPHGNGKDVRVAVFTQGANAEAAKAAGAEFVGMDELAAEI-KAGKMDFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKTGTVTPDVVTAVKNAKAGQVRYRAE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BURP8 (50S ribosomal protein L1 OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 50/156 (32.05%), Postives = 83/156 (53.21%), Query Frame = 1
Query:   67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            + K + + +  + +A+  VK  A A FDE+++  V+L I  +K++ +VRG++ LP G  K+VR                         L E++  +G L+ +   ++   M  +  + +IL   GLMPNPK GTVT DVA AV+ AK G ++F++D
Sbjct:   12 ASKVDRQKLYAIEEALSLVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLPAGTGKSVRVAVFAQGEKAEQARAAGAEIVGMEDLAEQV-KAGNLNFDVVIASPDTMRVVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BURM1 (50S ribosomal protein L1 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 51/154 (33.12%), Postives = 83/154 (53.90%), Query Frame = 1
Query:   73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K + + +  + DA+  VK  A A F+E+++  V+L I  +K++ +VRG++ LP G  K+VR                         L E+I  +G++D +   ++   M  +  + +IL   GLMPNPK GTVT DVA AV+ AK G ++F++D
Sbjct:   14 KVDRQKLYAIDDALALVKECASAKFNESIDVAVQLGIDAKKSDQVVRGSVVLPAGTGKSVRVAVFAQGEKAEQARAAGAEVVGMEDLAEQI-KAGQMDFDIVIASPDTMRIVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQFRVD 166          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK1_GUITH5.077e-1631.1750S ribosomal protein L1, chloroplastic OS=Guillar... [more]
RK1_ARATH5.077e-1632.2650S ribosomal protein L1, chloroplastic OS=Arabido... [more]
RL1_SPHAL6.631e-1633.7750S ribosomal protein L1 OS=Sphingopyxis alaskensi... [more]
RL1_NITMU6.631e-1632.5050S ribosomal protein L1 OS=Nitrosospira multiform... [more]
RL1_MYCCT6.631e-1634.5950S ribosomal protein L1 OS=Mycoplasma capricolum ... [more]
RL1_LACH46.631e-1629.4950S ribosomal protein L1 OS=Lactobacillus helvetic... [more]
RL1_LACAC6.631e-1628.8550S ribosomal protein L1 OS=Lactobacillus acidophi... [more]
RL1_CELJU6.631e-1631.4150S ribosomal protein L1 OS=Cellvibrio japonicus (... [more]
RL1_BURP86.631e-1632.0550S ribosomal protein L1 OS=Burkholderia phymatum ... [more]
RL1_BURM16.631e-1633.1250S ribosomal protein L1 OS=Burkholderia multivora... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
back to top