CX288757
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RK1_GUITH (50S ribosomal protein L1, chloroplastic OS=Guillardia theta GN=rpl1 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.077e-16 Identity = 48/154 (31.17%), Postives = 80/154 (51.95%), Query Frame = 1 Query: 73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 K E++P ++A+ +K A A F E+ EAH+ L + + + +R T+ LP G K +R L+++I G LD ++ +T MP + K+ K+L GLMP+PK GTVT+DV A++E K+G ++++ D Sbjct: 14 KIENKPY-KAIEALNLLKDTATAKFVESAEAHIALKLDTKYADQQLRTTLVLPKGTGKKIRIAVIAEGEKATEAINAGADLAGSTDLVQDIMK-GMLDFDRLIATPDMMPLIAKLGKVLGPRGLMPSPKSGTVTSDVKSAIEEFKKGKLEYRAD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.077e-16 Identity = 50/155 (32.26%), Postives = 80/155 (51.61%), Query Frame = 1 Query: 70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 K +E++ D+ AI +K A F E+VEAH RL I P+ + +R T++LP G + V LIE+I G ++ +K ++ M ++ + KIL GLMPNPK GTVT ++ +A++E K+G ++F+ D Sbjct: 121 KLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQI-KGGFMEFDKLIASPDMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRAD 274
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SPHAL (50S ribosomal protein L1 OS=Sphingopyxis alaskensis GN=rplA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16 Identity = 52/154 (33.77%), Postives = 81/154 (52.60%), Query Frame = 1 Query: 73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 K +++ + + +AIK V+ A A FDET+E + L + PR + +VRG + LP G K V+ L+E++ + G LD + +T M + ++ K L GLMPNPK GTVT +VA AV+ AK G I+F+++ Sbjct: 14 KVDAQKLHGVDEAIKLVRELATAKFDETLEIAMNLGVDPRHADQMVRGVVTLPAGTGKDVKVAVFARGDNAEKALAAGADKVGAEDLMEDMLA-GNLDYGRVIATPDMMGIVGRLGKTLGPKGLMPNPKLGTVTPNVAEAVKAAKGGQIEFRVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_NITMU (50S ribosomal protein L1 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rplA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16 Identity = 52/160 (32.50%), Postives = 81/160 (50.62%), Query Frame = 1 Query: 55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +K S+K + L DA+ V+ A A FDE+++ V L I +K++ VRG++ LP G K VR L E+I +G ++ + ++ M + ++ +IL GLMPNPK GTVT DVA AV+ AK G ++++ D Sbjct: 8 LKAISEKVDRTKYYPLQDALNLVRETAIAKFDESIDVAVNLGIDAKKSDQAVRGSVVLPAGTGKTVRVAVFAQGDKAREAAAAGADIVGFEDLAEQI-KAGNIEFDVAIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPDVAGAVKNAKAGQVQYRAD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MYCCT (50S ribosomal protein L1 OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=rplA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16 Identity = 55/159 (34.59%), Postives = 72/159 (45.28%), Query Frame = 1 Query: 58 KPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 K K E V L A+ K A FD TVE L I PRK + +RG + LP G K R +LI I + D + +T + M +L I KIL GLMPNPK GTVT DVA+AV + K+G ++++ D Sbjct: 9 KEALSKVEKNKVYPLNKALDLAKQTATTKFDSTVEVAFNLNIDPRKADQQIRGAVVLPAGTGKTQRVLVLTNTKTKEAEQAKADIVGGE-ELINRIKNENWFDFDIIVATPEMMAKLGAIGKILGPKGLMPNPKTGTVTMDVAKAVDDIKKGKVEYRAD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_LACH4 (50S ribosomal protein L1 OS=Lactobacillus helveticus (strain DPC 4571) GN=rplA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16 Identity = 46/156 (29.49%), Postives = 81/156 (51.92%), Query Frame = 1 Query: 67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +KK +S + + +A+K VK + A FD TV+ L++ P++ + +RG++ LP+G K L+++I G LD + +T M ++ ++ +IL GLMPNPK GTVT D+ +AV+ K G +++++D Sbjct: 12 AKKVDSNKLYSVAEAMKLVKETSYANFDATVDVAYNLSVDPKQADQQIRGSLVLPNGTGKTQTVVVFAEGPQADQAKAAGADFVGSDDLVQKI-QDGWLDFDVVVATPMMMAKVGRLGRILGPKGLMPNPKTGTVTMDIEKAVKNVKAGQVEYRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_LACAC (50S ribosomal protein L1 OS=Lactobacillus acidophilus GN=rplA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16 Identity = 45/156 (28.85%), Postives = 81/156 (51.92%), Query Frame = 1 Query: 67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +KK +S + + +A+K VK + A FD T++ L++ P++ + +RG++ LP+G K L+E+I G LD + +T M ++ ++ ++L GLMPNPK GTVT D+ +AV+ K G +++++D Sbjct: 12 AKKVDSNKLYSVAEAMKLVKETSYANFDATIDVAYNLSVDPKQADQQIRGSIVLPNGTGKTQTVVVFAEGPQAEQAKAAGADFVGSDDLVEKI-QGGWLDFDVVVATPMMMAKVGRLGRVLGPKGLMPNPKTGTVTMDIEKAVKNVKAGQVEYRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CELJU (50S ribosomal protein L1 OS=Cellvibrio japonicus (strain Ueda107) GN=rplA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16 Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = 1 Query: 67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++K + + DA+ +K + F ETV+ + L I PRK++ VRG LPHG+ K VR +L EI +GK+D + ++ M + ++ ++L GLMPNPK GTVT DV AV+ AK G ++++ + Sbjct: 12 NEKVDGSKQYSIDDAVALLKELSNVKFAETVDVSINLGIDPRKSDQSVRGATTLPHGNGKDVRVAVFTQGANAEAAKAAGAEFVGMDELAAEI-KAGKMDFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKTGTVTPDVVTAVKNAKAGQVRYRAE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BURP8 (50S ribosomal protein L1 OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rplA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16 Identity = 50/156 (32.05%), Postives = 83/156 (53.21%), Query Frame = 1 Query: 67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 + K + + + + +A+ VK A A FDE+++ V+L I +K++ +VRG++ LP G K+VR L E++ +G L+ + ++ M + + +IL GLMPNPK GTVT DVA AV+ AK G ++F++D Sbjct: 12 ASKVDRQKLYAIEEALSLVKECASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLPAGTGKSVRVAVFAQGEKAEQARAAGAEIVGMEDLAEQV-KAGNLNFDVVIASPDTMRVVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQFRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BURM1 (50S ribosomal protein L1 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=rplA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16 Identity = 51/154 (33.12%), Postives = 83/154 (53.90%), Query Frame = 1 Query: 73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 K + + + + DA+ VK A A F+E+++ V+L I +K++ +VRG++ LP G K+VR L E+I +G++D + ++ M + + +IL GLMPNPK GTVT DVA AV+ AK G ++F++D Sbjct: 14 KVDRQKLYAIDDALALVKECASAKFNESIDVAVQLGIDAKKSDQVVRGSVVLPAGTGKSVRVAVFAQGEKAEQARAAGAEVVGMEDLAEQI-KAGQMDFDIVIASPDTMRIVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQFRVD 166 The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bpback to top |