CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BACWK (50S ribosomal protein L1 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 1 
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A++ VK    A FD TVEA  RL + P+K +  +RG + LPHG  K  R                          I +I   G  D +   +T   M  + K+ ++L   GLMPNPK GTVT DV +AV E K G +++++D
Sbjct:   25 EAVELVKKTNTAKFDATVEAAFRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKAKEAEAAGAEFVGDADYIGKI-QKGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVD 166
[Close]
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BACHK (50S ribosomal protein L1 OS=Bacillus thuringiensis subsp. konkukian GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 1 
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A++ VK    A FD TVEA  RL + P+K +  +RG + LPHG  K  R                          I +I   G  D +   +T   M  + K+ ++L   GLMPNPK GTVT DV +AV E K G +++++D
Sbjct:   25 EAVELVKKTNTAKFDATVEAAFRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKAKEAEAAGADFVGDADYIGKI-QQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVD 166
[Close]
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BACCZ (50S ribosomal protein L1 OS=Bacillus cereus (strain ZK / E33L) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 1 
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A++ VK    A FD TVEA  RL + P+K +  +RG + LPHG  K  R                          I +I   G  D +   +T   M  + K+ ++L   GLMPNPK GTVT DV +AV E K G +++++D
Sbjct:   25 EAVELVKKTNTAKFDATVEAAFRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKAKEAEAAGADFVGDADYIGKI-QQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVD 166
[Close]
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BACCR (50S ribosomal protein L1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 1 
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A++ VK    A FD TVEA  RL + P+K +  +RG + LPHG  K  R                          I +I   G  D +   +T   M  + K+ ++L   GLMPNPK GTVT DV +AV E K G +++++D
Sbjct:   27 EAVELVKKTNTAKFDATVEAAFRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKAKEAEAAGADFVGDTDYIGKI-QQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVD 168
[Close]
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BACCQ (50S ribosomal protein L1 OS=Bacillus cereus (strain Q1) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 1 
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A++ VK    A FD TVEA  RL + P+K +  +RG + LPHG  K  R                          I +I   G  D +   +T   M  + K+ ++L   GLMPNPK GTVT DV +AV E K G +++++D
Sbjct:   25 EAVELVKKTNTAKFDATVEAAFRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKAKEAEAAGADFVGDADYIGKI-QQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVD 166
[Close]
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BACC7 (50S ribosomal protein L1 OS=Bacillus cereus (strain AH187) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 1 
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A++ VK    A FD TVEA  RL + P+K +  +RG + LPHG  K  R                          I +I   G  D +   +T   M  + K+ ++L   GLMPNPK GTVT DV +AV E K G +++++D
Sbjct:   25 EAVELVKKTNTAKFDATVEAAFRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKAKEAEAAGADFVGDADYIGKI-QQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVD 166
[Close]
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BACC4 (50S ribosomal protein L1 OS=Bacillus cereus (strain B4264) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 1 
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A++ VK    A FD TVEA  RL + P+K +  +RG + LPHG  K  R                          I +I   G  D +   +T   M  + K+ ++L   GLMPNPK GTVT DV +AV E K G +++++D
Sbjct:   25 EAVELVKKTNTAKFDATVEAAFRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKAKEAEAAGADFVGDTDYIGKI-QQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVD 166
[Close]
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BACC3 (50S ribosomal protein L1 OS=Bacillus cereus (strain 03BB102) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 1 
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A++ VK    A FD TVEA  RL + P+K +  +RG + LPHG  K  R                          I +I   G  D +   +T   M  + K+ ++L   GLMPNPK GTVT DV +AV E K G +++++D
Sbjct:   25 EAVELVKKTNTAKFDATVEAAFRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKAKEAEAAGADFVGDADYIGKI-QQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVD 166
[Close]
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BACC2 (50S ribosomal protein L1 OS=Bacillus cereus (strain G9842) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 1 
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A++ VK    A FD TVEA  RL + P+K +  +RG + LPHG  K  R                          I +I   G  D +   +T   M  + K+ ++L   GLMPNPK GTVT DV +AV E K G +++++D
Sbjct:   25 EAVELVKKTNTAKFDATVEAAFRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKAKEAEAAGADFVGDTDYIGKI-QQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVD 166
[Close]
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BACC1 (50S ribosomal protein L1 OS=Bacillus cereus (strain ATCC 10987) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 1 
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A++ VK    A FD TVEA  RL + P+K +  +RG + LPHG  K  R                          I +I   G  D +   +T   M  + K+ ++L   GLMPNPK GTVT DV +AV E K G +++++D
Sbjct:   25 EAVELVKKTNTAKFDATVEAAFRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKAKEAEAAGADFVGDADYIGKI-QQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVD 166
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_BACWK6.631e-1634.2750S ribosomal protein L1 OS=Bacillus weihenstephan... [more]
RL1_BACHK6.631e-1634.2750S ribosomal protein L1 OS=Bacillus thuringiensis... [more]
RL1_BACCZ6.631e-1634.2750S ribosomal protein L1 OS=Bacillus cereus (strai... [more]
RL1_BACCR6.631e-1634.2750S ribosomal protein L1 OS=Bacillus cereus (strai... [more]
RL1_BACCQ6.631e-1634.2750S ribosomal protein L1 OS=Bacillus cereus (strai... [more]
RL1_BACC76.631e-1634.2750S ribosomal protein L1 OS=Bacillus cereus (strai... [more]
RL1_BACC46.631e-1634.2750S ribosomal protein L1 OS=Bacillus cereus (strai... [more]
RL1_BACC36.631e-1634.2750S ribosomal protein L1 OS=Bacillus cereus (strai... [more]
RL1_BACC26.631e-1634.2750S ribosomal protein L1 OS=Bacillus cereus (strai... [more]
RL1_BACC16.631e-1634.2750S ribosomal protein L1 OS=Bacillus cereus (strai... [more]

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Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
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