CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BACC0 (50S ribosomal protein L1 OS=Bacillus cereus (strain AH820) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A++ VK    A FD TVEA  RL + P+K +  +RG + LPHG  K  R                          I +I   G  D +   +T   M  + K+ ++L   GLMPNPK GTVT DV +AV E K G +++++D
Sbjct:   25 EAVELVKKTNTAKFDATVEAAFRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKAKEAEAAGADFVGDADYIGKI-QQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BACAN (50S ribosomal protein L1 OS=Bacillus anthracis GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A++ VK    A FD TVEA  RL + P+K +  +RG + LPHG  K  R                          I +I   G  D +   +T   M  + K+ ++L   GLMPNPK GTVT DV +AV E K G +++++D
Sbjct:   25 EAVELVKKTNTAKFDATVEAAFRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKAKEAEAAGADFVGDADYIGKI-QQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BACAH (50S ribosomal protein L1 OS=Bacillus thuringiensis (strain Al Hakam) GN=rplA PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A++ VK    A FD TVEA  RL + P+K +  +RG + LPHG  K  R                          I +I   G  D +   +T   M  + K+ ++L   GLMPNPK GTVT DV +AV E K G +++++D
Sbjct:   25 EAVELVKKTNTAKFDATVEAAFRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKAKEAEAAGADFVGDADYIGKI-QQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BACAC (50S ribosomal protein L1 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A++ VK    A FD TVEA  RL + P+K +  +RG + LPHG  K  R                          I +I   G  D +   +T   M  + K+ ++L   GLMPNPK GTVT DV +AV E K G +++++D
Sbjct:   25 EAVELVKKTNTAKFDATVEAAFRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKAKEAEAAGADFVGDADYIGKI-QQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BACAA (50S ribosomal protein L1 OS=Bacillus anthracis (strain A0248) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A++ VK    A FD TVEA  RL + P+K +  +RG + LPHG  K  R                          I +I   G  D +   +T   M  + K+ ++L   GLMPNPK GTVT DV +AV E K G +++++D
Sbjct:   25 EAVELVKKTNTAKFDATVEAAFRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKAKEAEAAGADFVGDADYIGKI-QQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MESFL (50S ribosomal protein L1 OS=Mesoplasma florum GN=rplA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.660e-16
Identity = 52/152 (34.21%), Postives = 73/152 (48.03%), Query Frame = 1
Query:   79 ESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            + + V  L +AIK  K  +   FD TVE    L I PRK +  +RG + LP G  K  +                        +LI +I      + +   +T + M +L  I K+L   GLMPNPK GTVT DVA+A+ E K+G I+F+ D
Sbjct:   16 DKQKVYALDEAIKLAKETSTTKFDSTVELSFNLNIDPRKADQQIRGALVLPAGTGKTQKVLVLTNTKVKEAQDAGADFVGGE-ELITKIQKENWFEFDVIVATPEMMAKLGAIGKVLGPKGLMPNPKTGTVTMDVAKAIDEIKKGKIEFRAD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_DESDA (50S ribosomal protein L1 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.660e-16
Identity = 49/143 (34.27%), Postives = 74/143 (51.75%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            DA+ +    A A FDETV+  +RL + P+ ++ +VRG + LP+G  K VR                         L+ E+  +G L+ +   +T   M  + +I ++L   GLMPN K G+VT DVA+AV E K G + FK+D
Sbjct:   25 DAVGKSLGAAFAKFDETVDVAIRLGVDPKYSDQMVRGAVTLPNGLGKTVRVAVFCKGEKQAEAREAGADIVGAEDLVAEV-KAGNLNFDAAVATPDVMALVGQIGRLLGPRGLMPNAKTGSVTFDVAKAVSELKAGRVDFKVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CHRSD (50S ribosomal protein L1 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.660e-16
Identity = 50/155 (32.26%), Postives = 76/155 (49.03%), Query Frame = 1
Query:   70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K ++  V +L DA+  +   +   F E+VE  + L + PRK++ +VRG   +P+G  K  R                         L EE+   G LD +   +    M  + ++ +IL   GLMPNPK GTVT DVA AV+ AK G ++F+ D
Sbjct:   13 EKVDTSKVYNLEDAVALLSEVSTVKFKESVEVSINLGVDPRKSDQVVRGATVMPNGTGKDARVAVFAQGAAADAAKEAGADVVGMEDLAEEV-KKGNLDFDVVVAAPDAMRVVGQLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVRFRTD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_TERTT (50S ribosomal protein L1 OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.131e-15
Identity = 52/159 (32.70%), Postives = 77/159 (48.43%), Query Frame = 1
Query:   58 KPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K  ++K +      + +A+  +K  +   F ETV+A + L I PRK++  VRG  +LPHG  K VR                         L ++I   G +D +   +    M  +  + +IL   GLMPNPK GTVT DVA AV+ AK G ++F+ D
Sbjct:    9 KAINEKVDFNKAYGIDEAVALLKELSTVKFPETVDAAINLGIDPRKSDQAVRGATSLPHGTGKDVRVAVFTQGAAADAAKEAGAEFVGMEDLADQI-KGGMMDFDVVIADPAAMRVVGALGQILGPRGLMPNPKTGTVTPDVAGAVKNAKAGQVRFRAD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RALEJ (50S ribosomal protein L1 OS=Ralstonia eutropha (strain JMP134) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.131e-15
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A+  VK  A A FDE+++  V+L I  +K++ +VRG++ LP G  K+VR                         L E++  +G L+ +   ++   M  +  + +IL   GLMPNPK GTVT DVA+AV+ AK G ++F++D
Sbjct:   25 EALGLVKGCASAKFDESIDVAVQLGIDAKKSDQVVRGSVVLPAGTGKSVRVAVFAQGDKAEAAKAAGADIVGMEDLAEQV-KAGNLNFDVVIASPDTMRIVGTLGQILGPRGLMPNPKVGTVTPDVAQAVKNAKAGQVQFRVD 166          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_BACC06.631e-1634.2750S ribosomal protein L1 OS=Bacillus cereus (strai... [more]
RL1_BACAN6.631e-1634.2750S ribosomal protein L1 OS=Bacillus anthracis GN=... [more]
RL1_BACAH6.631e-1634.2750S ribosomal protein L1 OS=Bacillus thuringiensis... [more]
RL1_BACAC6.631e-1634.2750S ribosomal protein L1 OS=Bacillus anthracis (st... [more]
RL1_BACAA6.631e-1634.2750S ribosomal protein L1 OS=Bacillus anthracis (st... [more]
RL1_MESFL8.660e-1634.2150S ribosomal protein L1 OS=Mesoplasma florum GN=r... [more]
RL1_DESDA8.660e-1634.2750S ribosomal protein L1 OS=Desulfovibrio desulfur... [more]
RL1_CHRSD8.660e-1632.2650S ribosomal protein L1 OS=Chromohalobacter salex... [more]
RL1_TERTT1.131e-1532.7050S ribosomal protein L1 OS=Teredinibacter turnera... [more]
RL1_RALEJ1.131e-1534.2750S ribosomal protein L1 OS=Ralstonia eutropha (st... [more]

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Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
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