CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_FRATN (50S ribosomal protein L1 OS=Francisella tularensis subsp. novicida (strain U112) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.477e-15
Identity = 49/160 (30.63%), Postives = 82/160 (51.25%), Query Frame = 1
Query:   55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            I  +   ++  PV +  D +++V +     F E+V+  V L + PRK++ +VRG   LP+G  K VR                         L +E+   G +D +   ++   M  + ++ +IL   GLMPNPK GTVT DVA+AV++AK G +++++D
Sbjct:   11 ISAKINAEKKYPVSEAFDLLREVSS---VKFVESVDVSVALGVDPRKSDQVVRGASVLPNGTGKTVRVAVFAKGPAADAAKEAGAEVVGMEDLADEV-KKGNMDFDVVIASPDSMRVVGQLGQILGPKGLMPNPKVGTVTMDVAKAVRDAKAGQVRYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_FRATM (50S ribosomal protein L1 OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.477e-15
Identity = 49/160 (30.63%), Postives = 82/160 (51.25%), Query Frame = 1
Query:   55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            I  +   ++  PV +  D +++V +     F E+V+  V L + PRK++ +VRG   LP+G  K VR                         L +E+   G +D +   ++   M  + ++ +IL   GLMPNPK GTVT DVA+AV++AK G +++++D
Sbjct:   11 ISAKINAEKKYPVSEAFDLLREVSS---VKFVESVDVSVALGVDPRKSDQVVRGASVLPNGTGKTVRVAVFAKGPAADAAKEAGAEVVGMEDLADEV-KKGNMDFDVVIASPDSMRVVGQLGQILGPKGLMPNPKVGTVTMDVAKAVRDAKAGQVRYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_FRATF (50S ribosomal protein L1 OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.477e-15
Identity = 49/160 (30.63%), Postives = 82/160 (51.25%), Query Frame = 1
Query:   55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            I  +   ++  PV +  D +++V +     F E+V+  V L + PRK++ +VRG   LP+G  K VR                         L +E+   G +D +   ++   M  + ++ +IL   GLMPNPK GTVT DVA+AV++AK G +++++D
Sbjct:   11 ISAKINAEKKYPVSEAFDLLREVSS---VKFVESVDVSVALGVDPRKSDQVVRGASVLPNGTGKTVRVAVFAKGPAADAAKEAGAEVVGMEDLADEV-KKGNMDFDVVIASPDSMRVVGQLGQILGPKGLMPNPKVGTVTMDVAKAVRDAKAGQVRYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_FRAT1 (50S ribosomal protein L1 OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.477e-15
Identity = 49/160 (30.63%), Postives = 82/160 (51.25%), Query Frame = 1
Query:   55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            I  +   ++  PV +  D +++V +     F E+V+  V L + PRK++ +VRG   LP+G  K VR                         L +E+   G +D +   ++   M  + ++ +IL   GLMPNPK GTVT DVA+AV++AK G +++++D
Sbjct:   11 ISAKINAEKKYPVSEAFDLLREVSS---VKFVESVDVSVALGVDPRKSDQVVRGASVLPNGTGKTVRVAVFAKGPAADAAKEAGAEVVGMEDLADEV-KKGNMDFDVVIASPDSMRVVGQLGQILGPKGLMPNPKVGTVTMDVAKAVRDAKAGQVRYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BACHD (50S ribosomal protein L1 OS=Bacillus halodurans GN=rplA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.477e-15
Identity = 48/143 (33.57%), Postives = 74/143 (51.75%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A++ VK  + A FDETVE  VRL + P+K +  +RG + LP+G  K  R                          I +I S G  D +   +T   M ++ K+ ++L   GLMPNPK GTVT +V +AV + K G +++++D
Sbjct:   25 EALELVKKASVAKFDETVEVAVRLGVDPKKADQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGDEDCINKI-SQGWFDFDVIVATPDMMAQVGKLGRVLGPKGLMPNPKTGTVTFEVEKAVNDIKAGKVEYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ACTSZ (50S ribosomal protein L1 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.477e-15
Identity = 49/152 (32.24%), Postives = 78/152 (51.32%), Query Frame = 1
Query:   79 ESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +S    ++ +A+  +K  A A F+E+V+  V L I PRK++  VRG   LPHG  + VR                         L E++   G++D +   ++   M  + ++ +IL   GLMPNPK GTVT +VA AV+ AK G ++++ D
Sbjct:   16 DSTKAYEINEALALLKQFATAKFNESVDVAVNLGIDPRKSDQNVRGATVLPHGTGRTVRVAVFTQGANAEAAKEAGADLIGMEDLAEQV-KKGEMDFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKSGQVRYRND 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ACIF5 (50S ribosomal protein L1 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.477e-15
Identity = 48/143 (33.57%), Postives = 74/143 (51.75%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A++ VK  A   FDE+V+  V L I PRK++ +VRG + LPHG  K +R                       ++ + E+  +G++D +   +T   M  +  +  +L   GLMPNPK GTVT DV  AV  AK G ++++ D
Sbjct:   25 EALELVKKMATTKFDESVDVAVGLGIDPRKSDQVVRGAVVLPHGTGKQMRVAVFATADKATEAREAGADIVG-MEDLAELVKAGQMDFDVVIATPDAMRVVGTLGPVLGPRGLMPNPKVGTVTADVRTAVINAKGGQVRYRAD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ACIF2 (50S ribosomal protein L1 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.477e-15
Identity = 48/143 (33.57%), Postives = 74/143 (51.75%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A++ VK  A   FDE+V+  V L I PRK++ +VRG + LPHG  K +R                       ++ + E+  +G++D +   +T   M  +  +  +L   GLMPNPK GTVT DV  AV  AK G ++++ D
Sbjct:   25 EALELVKKMATTKFDESVDVAVGLGIDPRKSDQVVRGAVVLPHGTGKQMRVAVFATADKATEAREAGADIVG-MEDLAELVKAGQMDFDVVIATPDAMRVVGTLGPVLGPRGLMPNPKVGTVTADVRTAVINAKGGQVRYRAD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_UREU1 (50S ribosomal protein L1 OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.929e-15
Identity = 50/146 (34.25%), Postives = 76/146 (52.05%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASS-GKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L DAIK  +  +   FD ++   V+L +   K E  +RG+++LP+G+ K VR                          I+ I     ++DV    + ++ MP L K+ K+L   GLMPNPK GTVTNDV +AV+E K+G I+++ D
Sbjct:   23 LFDAIKLAQEKSITKFDGSINIAVKLNLDTTKVEQQLRGSISLPNGNGKNVRVLVLSEDITKEQAAAVGADYFGGADYIQNIEKMLNQIDV--IITNQKMMPLLAKLGKVLGPRGLMPNPKIGTVTNDVLKAVEEFKKGRIEYRTD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_NITEC (50S ribosomal protein L1 OS=Nitrosomonas eutropha (strain C91) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.929e-15
Identity = 53/159 (33.33%), Postives = 82/159 (51.57%), Query Frame = 1
Query:   58 KPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K  ++K +   +  L DA+  VK  A A FDE+V+  + L I  RK++ +VRG + LP G  K VR                         L E++ ++ +++ +   ++   M  + ++ +IL   GLMPNPK GTVT DVA AV+ AK G I+F+ D
Sbjct:    9 KEIAQKIDRDRLYPLTDALALVKEVATAKFDESVDIAINLGIDVRKSDQVVRGAVVLPSGTGKTVRVAVFAQGDKAKEALDAGADIVGLEDLAEQVKAN-EINFDLAIASPDSMRIVGQLGQILGPRGLMPNPKVGTVTLDVASAVKNAKAGQIQFRAD 166          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_FRATN1.477e-1530.6350S ribosomal protein L1 OS=Francisella tularensis... [more]
RL1_FRATM1.477e-1530.6350S ribosomal protein L1 OS=Francisella tularensis... [more]
RL1_FRATF1.477e-1530.6350S ribosomal protein L1 OS=Francisella tularensis... [more]
RL1_FRAT11.477e-1530.6350S ribosomal protein L1 OS=Francisella tularensis... [more]
RL1_BACHD1.477e-1533.5750S ribosomal protein L1 OS=Bacillus halodurans GN... [more]
RL1_ACTSZ1.477e-1532.2450S ribosomal protein L1 OS=Actinobacillus succino... [more]
RL1_ACIF51.477e-1533.5750S ribosomal protein L1 OS=Acidithiobacillus ferr... [more]
RL1_ACIF21.477e-1533.5750S ribosomal protein L1 OS=Acidithiobacillus ferr... [more]
RL1_UREU11.929e-1534.2550S ribosomal protein L1 OS=Ureaplasma urealyticum... [more]
RL1_NITEC1.929e-1533.3350S ribosomal protein L1 OS=Nitrosomonas eutropha ... [more]

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Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
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