CX288757
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_FRATN (50S ribosomal protein L1 OS=Francisella tularensis subsp. novicida (strain U112) GN=rplA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.477e-15 Identity = 49/160 (30.63%), Postives = 82/160 (51.25%), Query Frame = 1 Query: 55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 I + ++ PV + D +++V + F E+V+ V L + PRK++ +VRG LP+G K VR L +E+ G +D + ++ M + ++ +IL GLMPNPK GTVT DVA+AV++AK G +++++D Sbjct: 11 ISAKINAEKKYPVSEAFDLLREVSS---VKFVESVDVSVALGVDPRKSDQVVRGASVLPNGTGKTVRVAVFAKGPAADAAKEAGAEVVGMEDLADEV-KKGNMDFDVVIASPDSMRVVGQLGQILGPKGLMPNPKVGTVTMDVAKAVRDAKAGQVRYRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_FRATM (50S ribosomal protein L1 OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=rplA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.477e-15 Identity = 49/160 (30.63%), Postives = 82/160 (51.25%), Query Frame = 1 Query: 55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 I + ++ PV + D +++V + F E+V+ V L + PRK++ +VRG LP+G K VR L +E+ G +D + ++ M + ++ +IL GLMPNPK GTVT DVA+AV++AK G +++++D Sbjct: 11 ISAKINAEKKYPVSEAFDLLREVSS---VKFVESVDVSVALGVDPRKSDQVVRGASVLPNGTGKTVRVAVFAKGPAADAAKEAGAEVVGMEDLADEV-KKGNMDFDVVIASPDSMRVVGQLGQILGPKGLMPNPKVGTVTMDVAKAVRDAKAGQVRYRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_FRATF (50S ribosomal protein L1 OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=rplA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.477e-15 Identity = 49/160 (30.63%), Postives = 82/160 (51.25%), Query Frame = 1 Query: 55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 I + ++ PV + D +++V + F E+V+ V L + PRK++ +VRG LP+G K VR L +E+ G +D + ++ M + ++ +IL GLMPNPK GTVT DVA+AV++AK G +++++D Sbjct: 11 ISAKINAEKKYPVSEAFDLLREVSS---VKFVESVDVSVALGVDPRKSDQVVRGASVLPNGTGKTVRVAVFAKGPAADAAKEAGAEVVGMEDLADEV-KKGNMDFDVVIASPDSMRVVGQLGQILGPKGLMPNPKVGTVTMDVAKAVRDAKAGQVRYRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_FRAT1 (50S ribosomal protein L1 OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rplA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.477e-15 Identity = 49/160 (30.63%), Postives = 82/160 (51.25%), Query Frame = 1 Query: 55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 I + ++ PV + D +++V + F E+V+ V L + PRK++ +VRG LP+G K VR L +E+ G +D + ++ M + ++ +IL GLMPNPK GTVT DVA+AV++AK G +++++D Sbjct: 11 ISAKINAEKKYPVSEAFDLLREVSS---VKFVESVDVSVALGVDPRKSDQVVRGASVLPNGTGKTVRVAVFAKGPAADAAKEAGAEVVGMEDLADEV-KKGNMDFDVVIASPDSMRVVGQLGQILGPKGLMPNPKVGTVTMDVAKAVRDAKAGQVRYRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BACHD (50S ribosomal protein L1 OS=Bacillus halodurans GN=rplA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.477e-15 Identity = 48/143 (33.57%), Postives = 74/143 (51.75%), Query Frame = 1 Query: 106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +A++ VK + A FDETVE VRL + P+K + +RG + LP+G K R I +I S G D + +T M ++ K+ ++L GLMPNPK GTVT +V +AV + K G +++++D Sbjct: 25 EALELVKKASVAKFDETVEVAVRLGVDPKKADQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGDEDCINKI-SQGWFDFDVIVATPDMMAQVGKLGRVLGPKGLMPNPKTGTVTFEVEKAVNDIKAGKVEYRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ACTSZ (50S ribosomal protein L1 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rplA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.477e-15 Identity = 49/152 (32.24%), Postives = 78/152 (51.32%), Query Frame = 1 Query: 79 ESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +S ++ +A+ +K A A F+E+V+ V L I PRK++ VRG LPHG + VR L E++ G++D + ++ M + ++ +IL GLMPNPK GTVT +VA AV+ AK G ++++ D Sbjct: 16 DSTKAYEINEALALLKQFATAKFNESVDVAVNLGIDPRKSDQNVRGATVLPHGTGRTVRVAVFTQGANAEAAKEAGADLIGMEDLAEQV-KKGEMDFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKSGQVRYRND 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ACIF5 (50S ribosomal protein L1 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rplA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.477e-15 Identity = 48/143 (33.57%), Postives = 74/143 (51.75%), Query Frame = 1 Query: 106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +A++ VK A FDE+V+ V L I PRK++ +VRG + LPHG K +R ++ + E+ +G++D + +T M + + +L GLMPNPK GTVT DV AV AK G ++++ D Sbjct: 25 EALELVKKMATTKFDESVDVAVGLGIDPRKSDQVVRGAVVLPHGTGKQMRVAVFATADKATEAREAGADIVG-MEDLAELVKAGQMDFDVVIATPDAMRVVGTLGPVLGPRGLMPNPKVGTVTADVRTAVINAKGGQVRYRAD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ACIF2 (50S ribosomal protein L1 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rplA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.477e-15 Identity = 48/143 (33.57%), Postives = 74/143 (51.75%), Query Frame = 1 Query: 106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +A++ VK A FDE+V+ V L I PRK++ +VRG + LPHG K +R ++ + E+ +G++D + +T M + + +L GLMPNPK GTVT DV AV AK G ++++ D Sbjct: 25 EALELVKKMATTKFDESVDVAVGLGIDPRKSDQVVRGAVVLPHGTGKQMRVAVFATADKATEAREAGADIVG-MEDLAELVKAGQMDFDVVIATPDAMRVVGTLGPVLGPRGLMPNPKVGTVTADVRTAVINAKGGQVRYRAD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_UREU1 (50S ribosomal protein L1 OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=rplA PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.929e-15 Identity = 50/146 (34.25%), Postives = 76/146 (52.05%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASS-GKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L DAIK + + FD ++ V+L + K E +RG+++LP+G+ K VR I+ I ++DV + ++ MP L K+ K+L GLMPNPK GTVTNDV +AV+E K+G I+++ D Sbjct: 23 LFDAIKLAQEKSITKFDGSINIAVKLNLDTTKVEQQLRGSISLPNGNGKNVRVLVLSEDITKEQAAAVGADYFGGADYIQNIEKMLNQIDV--IITNQKMMPLLAKLGKVLGPRGLMPNPKIGTVTNDVLKAVEEFKKGRIEYRTD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_NITEC (50S ribosomal protein L1 OS=Nitrosomonas eutropha (strain C91) GN=rplA PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.929e-15 Identity = 53/159 (33.33%), Postives = 82/159 (51.57%), Query Frame = 1 Query: 58 KPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 K ++K + + L DA+ VK A A FDE+V+ + L I RK++ +VRG + LP G K VR L E++ ++ +++ + ++ M + ++ +IL GLMPNPK GTVT DVA AV+ AK G I+F+ D Sbjct: 9 KEIAQKIDRDRLYPLTDALALVKEVATAKFDESVDIAINLGIDVRKSDQVVRGAVVLPSGTGKTVRVAVFAQGDKAKEALDAGADIVGLEDLAEQVKAN-EINFDLAIASPDSMRIVGQLGQILGPRGLMPNPKVGTVTLDVASAVKNAKAGQIQFRAD 166 The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bpback to top |