CX288757
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_FRATH (50S ribosomal protein L1 OS=Francisella tularensis subsp. holarctica (strain LVS) GN=rplA PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.929e-15 Identity = 49/160 (30.63%), Postives = 82/160 (51.25%), Query Frame = 1 Query: 55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 I + ++ PV + D +++V + F E+V+ V L + PRK++ +VRG LP+G K VR L +E+ G +D + ++ M + ++ +IL GLMPNPK GTVT DVA+AV++AK G +++++D Sbjct: 12 ISAKINAEKKYPVSEAFDLLREVSS---VKFVESVDVSVALGVDPRKSDQVVRGASVLPNGTGKTVRVAVFAKGPAADAAKEAGAEVVGMEDLADEV-KKGNMDFDVVIASPDSMRVVGQLGQILGPKGLMPNPKIGTVTMDVAKAVRDAKAGQVRYRVD 167
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_DESRM (50S ribosomal protein L1 OS=Desulfotomaculum reducens (strain MI-1) GN=rplA PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.929e-15 Identity = 49/155 (31.61%), Postives = 76/155 (49.03%), Query Frame = 1 Query: 70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 K+ + + + ++A++ VK A A FDETVE RL + PR + +RG + LPHG K ++E+I G L + +T M + ++ ++L GLMPNPK GTVT +V AV++AK G I ++ D Sbjct: 13 KQFDKNTLYEPLEALEMVKKTATAKFDETVEVAFRLGVDPRHADQQLRGAVVLPHGTGKTKTVLVFAKGDKAKEAEAAGADFVGAEDMLEKI-QGGWLGFDVAIATPDMMGTVGRLGRVLGPRGLMPNPKTGTVTFEVGDAVRDAKGGKITYRTD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ARCB4 (50S ribosomal protein L1 OS=Arcobacter butzleri (strain RM4018) GN=rplA PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.929e-15 Identity = 55/170 (32.35%), Postives = 83/170 (48.82%), Query Frame = 1 Query: 25 AQVSVPYPLLIKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 A+VS Y L + ++K S L +A V+ A FDE+VE + L + PR + ++RG + LP+G K VR L E I +G ++ + +T M + K+ +IL GLMPNPK GTVT DV +AV +AK G + +++D Sbjct: 2 AKVSKRYKALAEKVEERKYS-----LAEACTTVRDLKSAKFDESVEIALNLNVDPRHADQMIRGAVVLPNGTGKTVRVAVFAKGVKLDEAKAAGADVVGNDDLAEAI-QAGNINFDVLIATPDCMGIVGKVGRILGPKGLMPNPKTGTVTMDVTKAVNDAKGGQVTYRVD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_UREPA (50S ribosomal protein L1 OS=Ureaplasma parvum GN=rplA PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 2.520e-15 Identity = 49/146 (33.56%), Postives = 76/146 (52.05%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASS-GKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L DAIK + + FD ++ ++L + K E +RG+++LP+G+ K VR I+ I ++DV + ++ MP L K+ K+L GLMPNPK GTVTNDV +AV+E K+G I+++ D Sbjct: 23 LFDAIKLAQEKSITKFDGSINIAIKLNLDTTKVEQQLRGSISLPNGNGKNVRVLVLSEDITKEEAASVGADYFGGADYIQNIEKMLNQIDV--IITNQKMMPLLAKLGKVLGPRGLMPNPKIGTVTNDVLKAVEEFKRGRIEYRTD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_UREP2 (50S ribosomal protein L1 OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=rplA PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 2.520e-15 Identity = 49/146 (33.56%), Postives = 76/146 (52.05%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASS-GKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L DAIK + + FD ++ ++L + K E +RG+++LP+G+ K VR I+ I ++DV + ++ MP L K+ K+L GLMPNPK GTVTNDV +AV+E K+G I+++ D Sbjct: 23 LFDAIKLAQEKSITKFDGSINIAIKLNLDTTKVEQQLRGSISLPNGNGKNVRVLVLSEDITKEEAASVGADYFGGADYIQNIEKMLNQIDV--IITNQKMMPLLAKLGKVLGPRGLMPNPKIGTVTNDVLKAVEEFKRGRIEYRTD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MYCMO (50S ribosomal protein L1 OS=Mycoplasma mobile GN=rplA PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 2.520e-15 Identity = 48/155 (30.97%), Postives = 77/155 (49.68%), Query Frame = 1 Query: 73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKL-IEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 K + L +AI+ K + FD +++ ++L + RK + +RG+++LP+G K +R K +EEI S K D + + + MP L K K+L GLMPNPK GTVT ++A+AV+E K+G ++ D Sbjct: 17 KDVENKIYSLDEAIEMAKKTSFVKFDASIDISLKLNLDTRKADQQLRGSVSLPNGTGKIIRVLATSDEKEQLDLAKKAGANIVANKSDLEEILKSEKFDFDIMVTDPKMMPTLGKYGKVLGPKGLMPNPKTGTVTPNIAKAVEEIKKGKANYRAD 171
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_FRAP2 (50S ribosomal protein L1 OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=rplA PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 2.520e-15 Identity = 51/159 (32.08%), Postives = 83/159 (52.20%), Query Frame = 1 Query: 58 KPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 K +++KK PV + D ++ V + F E+V+ V L + PRK++ +VRG LP+G K VR L +E+ G +D + ++ M + ++ +IL GLMPNPK GTVT DVA+AV++AK G +++++D Sbjct: 14 KIDAEKKY--PVSEAFDILRDVSS---VKFVESVDVSVALGVDPRKSDQVVRGASVLPNGTGKTVRVAVFAKGPAADAAKEAGADVVGMEDLADEV-KKGNMDFDVVIASPDSMRVVGQLGQILGPKGLMPNPKVGTVTMDVAKAVRDAKAGQVRYRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CHLCV (50S ribosomal protein L1 OS=Chlamydophila caviae GN=rplA PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 2.520e-15 Identity = 46/145 (31.72%), Postives = 74/145 (51.03%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L +AI +K FD+TV+ ++L I P+K++ +RG+++LP+G K ++ L+E I G +D + +T M + K+ K+L LMP PK GTVT DV +A+ E ++G I+FK D Sbjct: 23 LQEAIDILKQCPTVRFDQTVDVSIKLGIDPKKSDQQIRGSVSLPNGTGKTLKILVFAAGEKAKEALDAGADFVGSDDLVERI-KGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKAGTVTMDVTKAIAELRKGKIEFKAD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CHLAD (50S ribosomal protein L1 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplA PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 2.520e-15 Identity = 50/145 (34.48%), Postives = 68/145 (46.90%), Query Frame = 1 Query: 106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTN--DVARAVQEAKQGHIKFKMD 534 +AI VK + FD TVEAH+RL I PR + +R T+ LPHG K VR LI I D + +T M ++ +I + L GLMPNPK GTV D+AR ++E K G ++ + D Sbjct: 25 EAIALVKETSYTKFDATVEAHLRLGIDPRHADQNIRTTVALPHGTGKTVRVLVFAQGEALQTALDAGADYAGSDDLIARIDRENFFDFDVAIATPDMMGKVGRIGRKLGPRGLMPNPKSGTVVQPADLARTIREVKGGRVEIRND 169
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MARMS (50S ribosomal protein L1 OS=Marinomonas sp. (strain MWYL1) GN=rplA PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.291e-15 Identity = 47/156 (30.13%), Postives = 79/156 (50.64%), Query Frame = 1 Query: 67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++K E+ + + +A+ + + F E+++ V L + PRK++ +VRG+ LPHG K VR L E++ +G LD + ++ M + ++ ++L GLMPNPK GTVT DVA AV+ AK G +++ D Sbjct: 12 AEKVEATKLYSVEEAVALLSELSTVKFKESIDVSVNLGVDPRKSDQVVRGSTVLPHGAGKDVRVAVFAQGANAEAAKEAGADVVGFEDLAEQV-KAGNLDFDVVIASPDAMRIVGQLGQVLGPRGLMPNPKVGTVTPDVATAVRNAKAGQARYRTD 166 The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bpback to top |