CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_FRATH (50S ribosomal protein L1 OS=Francisella tularensis subsp. holarctica (strain LVS) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.929e-15
Identity = 49/160 (30.63%), Postives = 82/160 (51.25%), Query Frame = 1
Query:   55 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            I  +   ++  PV +  D +++V +     F E+V+  V L + PRK++ +VRG   LP+G  K VR                         L +E+   G +D +   ++   M  + ++ +IL   GLMPNPK GTVT DVA+AV++AK G +++++D
Sbjct:   12 ISAKINAEKKYPVSEAFDLLREVSS---VKFVESVDVSVALGVDPRKSDQVVRGASVLPNGTGKTVRVAVFAKGPAADAAKEAGAEVVGMEDLADEV-KKGNMDFDVVIASPDSMRVVGQLGQILGPKGLMPNPKIGTVTMDVAKAVRDAKAGQVRYRVD 167          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_DESRM (50S ribosomal protein L1 OS=Desulfotomaculum reducens (strain MI-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.929e-15
Identity = 49/155 (31.61%), Postives = 76/155 (49.03%), Query Frame = 1
Query:   70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K+ +   + + ++A++ VK  A A FDETVE   RL + PR  +  +RG + LPHG  K                            ++E+I   G L  +   +T   M  + ++ ++L   GLMPNPK GTVT +V  AV++AK G I ++ D
Sbjct:   13 KQFDKNTLYEPLEALEMVKKTATAKFDETVEVAFRLGVDPRHADQQLRGAVVLPHGTGKTKTVLVFAKGDKAKEAEAAGADFVGAEDMLEKI-QGGWLGFDVAIATPDMMGTVGRLGRVLGPRGLMPNPKTGTVTFEVGDAVRDAKGGKITYRTD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ARCB4 (50S ribosomal protein L1 OS=Arcobacter butzleri (strain RM4018) GN=rplA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.929e-15
Identity = 55/170 (32.35%), Postives = 83/170 (48.82%), Query Frame = 1
Query:   25 AQVSVPYPLLIKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            A+VS  Y  L +   ++K S     L +A   V+    A FDE+VE  + L + PR  + ++RG + LP+G  K VR                         L E I  +G ++ +   +T   M  + K+ +IL   GLMPNPK GTVT DV +AV +AK G + +++D
Sbjct:    2 AKVSKRYKALAEKVEERKYS-----LAEACTTVRDLKSAKFDESVEIALNLNVDPRHADQMIRGAVVLPNGTGKTVRVAVFAKGVKLDEAKAAGADVVGNDDLAEAI-QAGNINFDVLIATPDCMGIVGKVGRILGPKGLMPNPKTGTVTMDVTKAVNDAKGGQVTYRVD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_UREPA (50S ribosomal protein L1 OS=Ureaplasma parvum GN=rplA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.520e-15
Identity = 49/146 (33.56%), Postives = 76/146 (52.05%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASS-GKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L DAIK  +  +   FD ++   ++L +   K E  +RG+++LP+G+ K VR                          I+ I     ++DV    + ++ MP L K+ K+L   GLMPNPK GTVTNDV +AV+E K+G I+++ D
Sbjct:   23 LFDAIKLAQEKSITKFDGSINIAIKLNLDTTKVEQQLRGSISLPNGNGKNVRVLVLSEDITKEEAASVGADYFGGADYIQNIEKMLNQIDV--IITNQKMMPLLAKLGKVLGPRGLMPNPKIGTVTNDVLKAVEEFKRGRIEYRTD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_UREP2 (50S ribosomal protein L1 OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=rplA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.520e-15
Identity = 49/146 (33.56%), Postives = 76/146 (52.05%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASS-GKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L DAIK  +  +   FD ++   ++L +   K E  +RG+++LP+G+ K VR                          I+ I     ++DV    + ++ MP L K+ K+L   GLMPNPK GTVTNDV +AV+E K+G I+++ D
Sbjct:   23 LFDAIKLAQEKSITKFDGSINIAIKLNLDTTKVEQQLRGSISLPNGNGKNVRVLVLSEDITKEEAASVGADYFGGADYIQNIEKMLNQIDV--IITNQKMMPLLAKLGKVLGPRGLMPNPKIGTVTNDVLKAVEEFKRGRIEYRTD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MYCMO (50S ribosomal protein L1 OS=Mycoplasma mobile GN=rplA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.520e-15
Identity = 48/155 (30.97%), Postives = 77/155 (49.68%), Query Frame = 1
Query:   73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKL-IEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K     +  L +AI+  K  +   FD +++  ++L +  RK +  +RG+++LP+G  K +R                        K  +EEI  S K D +   +  + MP L K  K+L   GLMPNPK GTVT ++A+AV+E K+G   ++ D
Sbjct:   17 KDVENKIYSLDEAIEMAKKTSFVKFDASIDISLKLNLDTRKADQQLRGSVSLPNGTGKIIRVLATSDEKEQLDLAKKAGANIVANKSDLEEILKSEKFDFDIMVTDPKMMPTLGKYGKVLGPKGLMPNPKTGTVTPNIAKAVEEIKKGKANYRAD 171          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_FRAP2 (50S ribosomal protein L1 OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=rplA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.520e-15
Identity = 51/159 (32.08%), Postives = 83/159 (52.20%), Query Frame = 1
Query:   58 KPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K +++KK   PV +  D ++ V +     F E+V+  V L + PRK++ +VRG   LP+G  K VR                         L +E+   G +D +   ++   M  + ++ +IL   GLMPNPK GTVT DVA+AV++AK G +++++D
Sbjct:   14 KIDAEKKY--PVSEAFDILRDVSS---VKFVESVDVSVALGVDPRKSDQVVRGASVLPNGTGKTVRVAVFAKGPAADAAKEAGADVVGMEDLADEV-KKGNMDFDVVIASPDSMRVVGQLGQILGPKGLMPNPKVGTVTMDVAKAVRDAKAGQVRYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CHLCV (50S ribosomal protein L1 OS=Chlamydophila caviae GN=rplA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.520e-15
Identity = 46/145 (31.72%), Postives = 74/145 (51.03%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L +AI  +K      FD+TV+  ++L I P+K++  +RG+++LP+G  K ++                         L+E I   G +D +   +T   M  + K+ K+L    LMP PK GTVT DV +A+ E ++G I+FK D
Sbjct:   23 LQEAIDILKQCPTVRFDQTVDVSIKLGIDPKKSDQQIRGSVSLPNGTGKTLKILVFAAGEKAKEALDAGADFVGSDDLVERI-KGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKAGTVTMDVTKAIAELRKGKIEFKAD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CHLAD (50S ribosomal protein L1 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.520e-15
Identity = 50/145 (34.48%), Postives = 68/145 (46.90%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTN--DVARAVQEAKQGHIKFKMD 534
            +AI  VK  +   FD TVEAH+RL I PR  +  +R T+ LPHG  K VR                         LI  I      D +   +T   M ++ +I + L   GLMPNPK GTV    D+AR ++E K G ++ + D
Sbjct:   25 EAIALVKETSYTKFDATVEAHLRLGIDPRHADQNIRTTVALPHGTGKTVRVLVFAQGEALQTALDAGADYAGSDDLIARIDRENFFDFDVAIATPDMMGKVGRIGRKLGPRGLMPNPKSGTVVQPADLARTIREVKGGRVEIRND 169          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MARMS (50S ribosomal protein L1 OS=Marinomonas sp. (strain MWYL1) GN=rplA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.291e-15
Identity = 47/156 (30.13%), Postives = 79/156 (50.64%), Query Frame = 1
Query:   67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++K E+  +  + +A+  +   +   F E+++  V L + PRK++ +VRG+  LPHG  K VR                         L E++  +G LD +   ++   M  + ++ ++L   GLMPNPK GTVT DVA AV+ AK G  +++ D
Sbjct:   12 AEKVEATKLYSVEEAVALLSELSTVKFKESIDVSVNLGVDPRKSDQVVRGSTVLPHGAGKDVRVAVFAQGANAEAAKEAGADVVGFEDLAEQV-KAGNLDFDVVIASPDAMRIVGQLGQVLGPRGLMPNPKVGTVTPDVATAVRNAKAGQARYRTD 166          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_FRATH1.929e-1530.6350S ribosomal protein L1 OS=Francisella tularensis... [more]
RL1_DESRM1.929e-1531.6150S ribosomal protein L1 OS=Desulfotomaculum reduc... [more]
RL1_ARCB41.929e-1532.3550S ribosomal protein L1 OS=Arcobacter butzleri (s... [more]
RL1_UREPA2.520e-1533.5650S ribosomal protein L1 OS=Ureaplasma parvum GN=r... [more]
RL1_UREP22.520e-1533.5650S ribosomal protein L1 OS=Ureaplasma parvum sero... [more]
RL1_MYCMO2.520e-1530.9750S ribosomal protein L1 OS=Mycoplasma mobile GN=r... [more]
RL1_FRAP22.520e-1532.0850S ribosomal protein L1 OS=Francisella philomirag... [more]
RL1_CHLCV2.520e-1531.7250S ribosomal protein L1 OS=Chlamydophila caviae G... [more]
RL1_CHLAD2.520e-1534.4850S ribosomal protein L1 OS=Chloroflexus aggregans... [more]
RL1_MARMS3.291e-1530.1350S ribosomal protein L1 OS=Marinomonas sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
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