CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_LISMO (50S ribosomal protein L1 OS=Listeria monocytogenes GN=rplA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.291e-15
Identity = 48/155 (30.97%), Postives = 76/155 (49.03%), Query Frame = 1
Query:   70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K+ ++  V    +A++  K    A FD TVE   RL + P+K +  +RG + LP+G  K  R                        + +E+I + G  D +   +T   M  + K+ ++L   GLMPNPK GTVT DV +AV E K G +++++D
Sbjct:   13 KQIDANKVYTAEEAVELAKKIDFAKFDATVEVAFRLGVDPKKADQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGESEFVEKI-NQGWFDFDVIVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTMDVTKAVNEIKAGKVEYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_DECAR (50S ribosomal protein L1 OS=Dechloromonas aromatica (strain RCB) GN=rplA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.291e-15
Identity = 50/159 (31.45%), Postives = 80/159 (50.31%), Query Frame = 1
Query:   58 KPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K  + K  ++ +  L +A+   K  A A FDE+++  V L +  RK++ +VRG++ LP G  K+VR                         L  E+  +G L+ +   +T   M  + ++ +IL   GLMPNPK GTVT DV  AV+ AK G ++++ D
Sbjct:    9 KALASKVVAQKLYPLQEALTLAKETAIAKFDESIDVAVNLGVDARKSDQVVRGSVVLPAGTGKSVRVAVFAQGEKAEAAKAAGAEVVGFDDLAAEV-KAGNLNFDVVIATPDAMKVVGQLGQILGPRGLMPNPKVGTVTMDVVTAVKNAKAGQVQYRTD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ACIBY (50S ribosomal protein L1 OS=Acinetobacter baumannii (strain AYE) GN=rplA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.291e-15
Identity = 51/152 (33.55%), Postives = 73/152 (48.03%), Query Frame = 1
Query:   79 ESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            E+  V  L +A++ + +   A F E+++  V L + PRK++ +VRG   LP G  K VR                         L E I   G LD +   +    M  + K+  IL   GLMPNPK GTVT DVA AV+ AK G  ++++D
Sbjct:   16 EANKVYTLEEAVQVLNSLPAAKFKESLDISVNLGVDPRKSDQVVRGATTLPAGTGKTVRVAVFAQGAQAEAAKEAGADVVGFDDLAESI-QGGNLDFDVVIAAPDAMRVVGKLGTILGPRGLMPNPKVGTVTPDVAGAVKNAKSGQARYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ACIBT (50S ribosomal protein L1 OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=rplA PE=3 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 3.291e-15
Identity = 51/152 (33.55%), Postives = 73/152 (48.03%), Query Frame = 1
Query:   79 ESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            E+  V  L +A++ + +   A F E+++  V L + PRK++ +VRG   LP G  K VR                         L E I   G LD +   +    M  + K+  IL   GLMPNPK GTVT DVA AV+ AK G  ++++D
Sbjct:   16 EANKVYTLEEAVQVLNSLPAAKFKESLDISVNLGVDPRKSDQVVRGATTLPAGTGKTVRVAVFAQGAQAEAAKEAGADVVGFDDLAESI-QGGNLDFDVVIAAPDAMRVVGKLGTILGPRGLMPNPKVGTVTPDVAGAVKNAKSGQARYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ACIBS (50S ribosomal protein L1 OS=Acinetobacter baumannii (strain SDF) GN=rplA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.291e-15
Identity = 51/152 (33.55%), Postives = 73/152 (48.03%), Query Frame = 1
Query:   79 ESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            E+  V  L +A++ + +   A F E+++  V L + PRK++ +VRG   LP G  K VR                         L E I   G LD +   +    M  + K+  IL   GLMPNPK GTVT DVA AV+ AK G  ++++D
Sbjct:   16 EANKVYTLEEAVQVLNSLPAAKFKESLDISVNLGVDPRKSDQVVRGATTLPAGTGKTVRVAVFAQGAQAEAAKEAGADVVGFDDLAESI-QGGNLDFDVVIAAPDAMRVVGKLGTILGPRGLMPNPKVGTVTPDVAGAVKNAKSGQARYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ACIB5 (50S ribosomal protein L1 OS=Acinetobacter baumannii (strain AB0057) GN=rplA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.291e-15
Identity = 51/152 (33.55%), Postives = 73/152 (48.03%), Query Frame = 1
Query:   79 ESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            E+  V  L +A++ + +   A F E+++  V L + PRK++ +VRG   LP G  K VR                         L E I   G LD +   +    M  + K+  IL   GLMPNPK GTVT DVA AV+ AK G  ++++D
Sbjct:   16 EANKVYTLEEAVQVLNSLPAAKFKESLDISVNLGVDPRKSDQVVRGATTLPAGTGKTVRVAVFAQGAQAEAAKEAGADVVGFDDLAESI-QGGNLDFDVVIAAPDAMRVVGKLGTILGPRGLMPNPKVGTVTPDVAGAVKNAKSGQARYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ACIB3 (50S ribosomal protein L1 OS=Acinetobacter baumannii (strain AB307-0294) GN=rplA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.291e-15
Identity = 51/152 (33.55%), Postives = 73/152 (48.03%), Query Frame = 1
Query:   79 ESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            E+  V  L +A++ + +   A F E+++  V L + PRK++ +VRG   LP G  K VR                         L E I   G LD +   +    M  + K+  IL   GLMPNPK GTVT DVA AV+ AK G  ++++D
Sbjct:   16 EANKVYTLEEAVQVLNSLPAAKFKESLDISVNLGVDPRKSDQVVRGATTLPAGTGKTVRVAVFAQGAQAEAAKEAGADVVGFDDLAESI-QGGNLDFDVVIAAPDAMRVVGKLGTILGPRGLMPNPKVGTVTPDVAGAVKNAKSGQARYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SHEAM (50S ribosomal protein L1 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.298e-15
Identity = 49/155 (31.61%), Postives = 80/155 (51.61%), Query Frame = 1
Query:   70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K ++    D+ +AI  +K  A A F E+V+  V L + PRK++  VRG + LPHG  + VR                         L E++  +G+++ +   ++   M  +  + +IL   GLMPNPK GTVT +VA AV+ AK G ++++ D
Sbjct:   13 EKVDATKAYDINEAITLLKELATAKFVESVDVAVNLGVDPRKSDQNVRGAIVLPHGTGRDVRVAVFTQGANAEAAKEAGAELVGMEDLAEQV-KAGEMNFDVVIASPDAMRVVGMLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRND 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_NOVAD (50S ribosomal protein L1 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.298e-15
Identity = 49/156 (31.41%), Postives = 81/156 (51.92%), Query Frame = 1
Query:   67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K  +++ +  + +AI  +K    A FDE++E  + L + PR  + +VRG + LP G  K V+                         L+E++  +G LD  +  +T   M  + ++ K+L   GLMPNPK GTVT +VA AV+ AK G I+F+++
Sbjct:   13 TKLGDNQKLYAVDEAIALLKDLKSAKFDESLEVSLNLGVDPRHADQMVRGMVTLPSGTGKDVKVAVFARGDKAEAALAAGADKVGAEDLLEDM-QAGNLDYGRVIATPDMMGIVGRLGKVLGPKGLMPNPKLGTVTPNVAEAVKAAKGGQIEFRVE 167          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_LEPBP (50S ribosomal protein L1 OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.298e-15
Identity = 49/155 (31.61%), Postives = 78/155 (50.32%), Query Frame = 1
Query:   70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K +      L +A+   KA + + FD T+E   ++     K+   VRGT++LPHG  K ++                       + LIE++ S G  D + C +T   M  + K+  +L + GLMP PK GTVT DV++AV+E K G I+++ D
Sbjct:   12 EKVDRTKAYTLGEAVGLAKATSYSKFDGTLEISTKINY---KSLQNVRGTISLPHGTGKTIKVLVFCKGDKQNEAREAGADFVGDMDLIEKV-SGGWTDFDACVATPDMMKEVGKLGPVLGRKGLMPKPKAGTVTTDVSKAVKELKAGRIEYRPD 162          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_LISMO3.291e-1530.9750S ribosomal protein L1 OS=Listeria monocytogenes... [more]
RL1_DECAR3.291e-1531.4550S ribosomal protein L1 OS=Dechloromonas aromatic... [more]
RL1_ACIBY3.291e-1533.5550S ribosomal protein L1 OS=Acinetobacter baumanni... [more]
RL1_ACIBT3.291e-1533.5550S ribosomal protein L1 OS=Acinetobacter baumanni... [more]
RL1_ACIBS3.291e-1533.5550S ribosomal protein L1 OS=Acinetobacter baumanni... [more]
RL1_ACIB53.291e-1533.5550S ribosomal protein L1 OS=Acinetobacter baumanni... [more]
RL1_ACIB33.291e-1533.5550S ribosomal protein L1 OS=Acinetobacter baumanni... [more]
RL1_SHEAM4.298e-1531.6150S ribosomal protein L1 OS=Shewanella amazonensis... [more]
RL1_NOVAD4.298e-1531.4150S ribosomal protein L1 OS=Novosphingobium aromat... [more]
RL1_LEPBP4.298e-1531.6150S ribosomal protein L1 OS=Leptospira biflexa ser... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
back to top