CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4782 contig Ccv1_Contig4782:524..1061. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BACSU (50S ribosomal protein L1 OS=Bacillus subtilis GN=rplA PE=3 SV=4)

HSP 1 Score: 80.4925 bits (197), Expect = 5.613e-15
Identity = 48/146 (32.88%), Postives = 70/146 (47.95%), Query Frame = 1
Query:   97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            D+ +A+  VK    A FD TVE   RL + PRK +  +RG + LP+G  K  R                          I +I   G  D +   +T   M  + KI ++L   GLMPNPK GTVT +V +A+ E K G +++++D
Sbjct:   22 DVSEAVALVKKTNTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADFVGDTDYINKI-QQGWFDFDVIVATPDMMGEVGKIGRVLGPKGLMPNPKTGTVTFEVEKAIGEIKAGKVEYRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ANAPZ (50S ribosomal protein L1 OS=Anaplasma phagocytophilum (strain HZ) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.613e-15
Identity = 48/143 (33.57%), Postives = 70/143 (48.95%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            + I Q+  +  A F E+V+  ++L+    ++   +RG   LP G  + VR                         LIEEI    KLD + C +T  FM ++  I+KIL   GLMPNPK GTVT D+A+ V   K G ++F+ D
Sbjct:   12 EGIDQLLKSTTARFKESVDVAIKLSTGDSRSGDSIRGVAVLPKGLGREVRVAVLAKGEYAKQAKDAGADVVGDSDLIEEIKKGRKLDFDWCIATPDFMSQVSAIAKILGPRGLMPNPKFGTVTFDIAKMVGIVKSGQVRFRSD 154          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SHESW (50S ribosomal protein L1 OS=Shewanella sp. (strain W3-18-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.331e-15
Identity = 50/155 (32.26%), Postives = 79/155 (50.97%), Query Frame = 1
Query:   70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K +   + ++ DA+  +K  A A F E+V+  V L I PRK++  VRG   LPHG  + VR                         L E+I  +G+++ +   ++   M  +  + +IL   GLMPNPK GTVT +VA AV+ AK G ++++ D
Sbjct:   13 EKVDGTKLYEINDAVALLKELATAKFVESVDVAVNLGIDPRKSDQNVRGATVLPHGTGRDVRVAVFTQGANAEAAKAAGAELVGMDDLAEQI-KAGEMNFDVVIASPDAMRVVGMLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRND 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SHESR (50S ribosomal protein L1 OS=Shewanella sp. (strain MR-7) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.331e-15
Identity = 50/155 (32.26%), Postives = 79/155 (50.97%), Query Frame = 1
Query:   70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K +   + ++ DA+  +K  A A F E+V+  V L I PRK++  VRG   LPHG  + VR                         L E+I  +G+++ +   ++   M  +  + +IL   GLMPNPK GTVT +VA AV+ AK G ++++ D
Sbjct:   13 EKVDGTKLYEINDAVALLKELATAKFVESVDVAVNLGIDPRKSDQNVRGATVLPHGTGRDVRVAVFTQGANAEAAKAAGAELVGMDDLAEQI-KAGEMNFDVVIASPDAMRVVGMLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRND 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SHESM (50S ribosomal protein L1 OS=Shewanella sp. (strain MR-4) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.331e-15
Identity = 50/155 (32.26%), Postives = 79/155 (50.97%), Query Frame = 1
Query:   70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K +   + ++ DA+  +K  A A F E+V+  V L I PRK++  VRG   LPHG  + VR                         L E+I  +G+++ +   ++   M  +  + +IL   GLMPNPK GTVT +VA AV+ AK G ++++ D
Sbjct:   13 EKVDGTKLYEINDAVALLKELATAKFVESVDVAVNLGIDPRKSDQNVRGATVLPHGTGRDVRVAVFTQGANAEAAKAAGAELVGMDDLAEQI-KAGEMNFDVVIASPDAMRVVGMLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRND 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SHEPC (50S ribosomal protein L1 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.331e-15
Identity = 50/155 (32.26%), Postives = 79/155 (50.97%), Query Frame = 1
Query:   70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K +   + ++ DA+  +K  A A F E+V+  V L I PRK++  VRG   LPHG  + VR                         L E+I  +G+++ +   ++   M  +  + +IL   GLMPNPK GTVT +VA AV+ AK G ++++ D
Sbjct:   13 EKVDGTKLYEINDAVALLKELATAKFVESVDVAVNLGIDPRKSDQNVRGATVLPHGTGRDVRVAVFTQGANAEAAKAAGAELVGMDDLAEQI-KAGEMNFDVVIASPDAMRVVGMLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRND 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PHOLL (50S ribosomal protein L1 OS=Photorhabdus luminescens subsp. laumondii GN=rplA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.331e-15
Identity = 49/155 (31.61%), Postives = 80/155 (51.61%), Query Frame = 1
Query:   70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K ++    D+ +A+  +K  A A F E+V+  V L I  RK++  VRG   LPHG  ++VR                       ++ + E+   G++D +   ++   M  + ++ +IL   GLMPNPK GTVT +VA AVQ AK G ++++ D
Sbjct:   13 EKVDATKQYDINEAVVLLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVG-MEDLAELVKKGEMDFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVQNAKAGQVRYRND 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MANSM (50S ribosomal protein L1 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.331e-15
Identity = 49/152 (32.24%), Postives = 79/152 (51.97%), Query Frame = 1
Query:   79 ESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +S    ++ +AI  +K  A A FDE+V+  V L I PRK++  VRG   LP+G  ++VR                         L E+I   G+++ +   ++   M  + ++ ++L   GLMPNPK GTVT +VA AV+ AK G ++++ D
Sbjct:   16 DSTKAYEINEAIAVLKQFATAKFDESVDVAVNLGIDPRKSDQNVRGATVLPNGTGRSVRVAVFTQGANADAAKEAGADLVGMEDLAEQI-KKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVADAVKNAKSGQVRYRND 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MACCJ (50S ribosomal protein L1 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.331e-15
Identity = 49/156 (31.41%), Postives = 75/156 (48.08%), Query Frame = 1
Query:   67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++K +S     + +AIK  K  +   FD +VE   RL I  RK +  +RG + LP+G  K  R                        + I +I + G  D +   +T   M  + K+ ++L   GLMPNPK GTVT DV +AVQE K G ++++ +
Sbjct:   12 AQKVDSTKFYSVEEAIKLAKETSTVNFDASVEVAFRLGIDVRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKLKEAEAAGADFVGDSEYINKI-NQGWFDFDVIVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTMDVTKAVQEIKAGKVEYRAE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_LEPIN (50S ribosomal protein L1 OS=Leptospira interrogans GN=rplA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.331e-15
Identity = 50/159 (31.45%), Postives = 77/159 (48.43%), Query Frame = 1
Query:   58 KPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +   +K +S     +  A++  K+ +   FD T+E   ++     K+   +RGT++LPHG  K +R                         LIE++A  G  D + C +T   M  + K+  IL + GLMP PK GTVT DVA+AV E K G I+++ D
Sbjct:    8 RAHKEKVDSTKFFSIDKAVELAKSTSYTKFDGTLEIATKVNY---KSLQNIRGTISLPHGTGKKIRVLVFCKGDKQNDAKAAGADFVGDTDLIEKVAG-GWTDFDACVATPDMMKDVGKLGPILGRKGLMPKPKAGTVTTDVAKAVNELKAGRIEYRPD 162          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_BACSU5.613e-1532.8850S ribosomal protein L1 OS=Bacillus subtilis GN=r... [more]
RL1_ANAPZ5.613e-1533.5750S ribosomal protein L1 OS=Anaplasma phagocytophi... [more]
RL1_SHESW7.331e-1532.2650S ribosomal protein L1 OS=Shewanella sp. (strain... [more]
RL1_SHESR7.331e-1532.2650S ribosomal protein L1 OS=Shewanella sp. (strain... [more]
RL1_SHESM7.331e-1532.2650S ribosomal protein L1 OS=Shewanella sp. (strain... [more]
RL1_SHEPC7.331e-1532.2650S ribosomal protein L1 OS=Shewanella putrefacien... [more]
RL1_PHOLL7.331e-1531.6150S ribosomal protein L1 OS=Photorhabdus luminesce... [more]
RL1_MANSM7.331e-1532.2450S ribosomal protein L1 OS=Mannheimia succinicipr... [more]
RL1_MACCJ7.331e-1531.4150S ribosomal protein L1 OS=Macrococcus caseolytic... [more]
RL1_LEPIN7.331e-1531.4550S ribosomal protein L1 OS=Leptospira interrogans... [more]

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Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
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