CX288757
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BACSU (50S ribosomal protein L1 OS=Bacillus subtilis GN=rplA PE=3 SV=4) HSP 1 Score: 80.4925 bits (197), Expect = 5.613e-15 Identity = 48/146 (32.88%), Postives = 70/146 (47.95%), Query Frame = 1 Query: 97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 D+ +A+ VK A FD TVE RL + PRK + +RG + LP+G K R I +I G D + +T M + KI ++L GLMPNPK GTVT +V +A+ E K G +++++D Sbjct: 22 DVSEAVALVKKTNTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADFVGDTDYINKI-QQGWFDFDVIVATPDMMGEVGKIGRVLGPKGLMPNPKTGTVTFEVEKAIGEIKAGKVEYRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ANAPZ (50S ribosomal protein L1 OS=Anaplasma phagocytophilum (strain HZ) GN=rplA PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 5.613e-15 Identity = 48/143 (33.57%), Postives = 70/143 (48.95%), Query Frame = 1 Query: 106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 + I Q+ + A F E+V+ ++L+ ++ +RG LP G + VR LIEEI KLD + C +T FM ++ I+KIL GLMPNPK GTVT D+A+ V K G ++F+ D Sbjct: 12 EGIDQLLKSTTARFKESVDVAIKLSTGDSRSGDSIRGVAVLPKGLGREVRVAVLAKGEYAKQAKDAGADVVGDSDLIEEIKKGRKLDFDWCIATPDFMSQVSAIAKILGPRGLMPNPKFGTVTFDIAKMVGIVKSGQVRFRSD 154
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SHESW (50S ribosomal protein L1 OS=Shewanella sp. (strain W3-18-1) GN=rplA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 7.331e-15 Identity = 50/155 (32.26%), Postives = 79/155 (50.97%), Query Frame = 1 Query: 70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +K + + ++ DA+ +K A A F E+V+ V L I PRK++ VRG LPHG + VR L E+I +G+++ + ++ M + + +IL GLMPNPK GTVT +VA AV+ AK G ++++ D Sbjct: 13 EKVDGTKLYEINDAVALLKELATAKFVESVDVAVNLGIDPRKSDQNVRGATVLPHGTGRDVRVAVFTQGANAEAAKAAGAELVGMDDLAEQI-KAGEMNFDVVIASPDAMRVVGMLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRND 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SHESR (50S ribosomal protein L1 OS=Shewanella sp. (strain MR-7) GN=rplA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 7.331e-15 Identity = 50/155 (32.26%), Postives = 79/155 (50.97%), Query Frame = 1 Query: 70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +K + + ++ DA+ +K A A F E+V+ V L I PRK++ VRG LPHG + VR L E+I +G+++ + ++ M + + +IL GLMPNPK GTVT +VA AV+ AK G ++++ D Sbjct: 13 EKVDGTKLYEINDAVALLKELATAKFVESVDVAVNLGIDPRKSDQNVRGATVLPHGTGRDVRVAVFTQGANAEAAKAAGAELVGMDDLAEQI-KAGEMNFDVVIASPDAMRVVGMLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRND 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SHESM (50S ribosomal protein L1 OS=Shewanella sp. (strain MR-4) GN=rplA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 7.331e-15 Identity = 50/155 (32.26%), Postives = 79/155 (50.97%), Query Frame = 1 Query: 70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +K + + ++ DA+ +K A A F E+V+ V L I PRK++ VRG LPHG + VR L E+I +G+++ + ++ M + + +IL GLMPNPK GTVT +VA AV+ AK G ++++ D Sbjct: 13 EKVDGTKLYEINDAVALLKELATAKFVESVDVAVNLGIDPRKSDQNVRGATVLPHGTGRDVRVAVFTQGANAEAAKAAGAELVGMDDLAEQI-KAGEMNFDVVIASPDAMRVVGMLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRND 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SHEPC (50S ribosomal protein L1 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rplA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 7.331e-15 Identity = 50/155 (32.26%), Postives = 79/155 (50.97%), Query Frame = 1 Query: 70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +K + + ++ DA+ +K A A F E+V+ V L I PRK++ VRG LPHG + VR L E+I +G+++ + ++ M + + +IL GLMPNPK GTVT +VA AV+ AK G ++++ D Sbjct: 13 EKVDGTKLYEINDAVALLKELATAKFVESVDVAVNLGIDPRKSDQNVRGATVLPHGTGRDVRVAVFTQGANAEAAKAAGAELVGMDDLAEQI-KAGEMNFDVVIASPDAMRVVGMLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRND 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PHOLL (50S ribosomal protein L1 OS=Photorhabdus luminescens subsp. laumondii GN=rplA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 7.331e-15 Identity = 49/155 (31.61%), Postives = 80/155 (51.61%), Query Frame = 1 Query: 70 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +K ++ D+ +A+ +K A A F E+V+ V L I RK++ VRG LPHG ++VR ++ + E+ G++D + ++ M + ++ +IL GLMPNPK GTVT +VA AVQ AK G ++++ D Sbjct: 13 EKVDATKQYDINEAVVLLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVG-MEDLAELVKKGEMDFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVQNAKAGQVRYRND 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MANSM (50S ribosomal protein L1 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 7.331e-15 Identity = 49/152 (32.24%), Postives = 79/152 (51.97%), Query Frame = 1 Query: 79 ESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +S ++ +AI +K A A FDE+V+ V L I PRK++ VRG LP+G ++VR L E+I G+++ + ++ M + ++ ++L GLMPNPK GTVT +VA AV+ AK G ++++ D Sbjct: 16 DSTKAYEINEAIAVLKQFATAKFDESVDVAVNLGIDPRKSDQNVRGATVLPNGTGRSVRVAVFTQGANADAAKEAGADLVGMEDLAEQI-KKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVADAVKNAKSGQVRYRND 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MACCJ (50S ribosomal protein L1 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rplA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 7.331e-15 Identity = 49/156 (31.41%), Postives = 75/156 (48.08%), Query Frame = 1 Query: 67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++K +S + +AIK K + FD +VE RL I RK + +RG + LP+G K R + I +I + G D + +T M + K+ ++L GLMPNPK GTVT DV +AVQE K G ++++ + Sbjct: 12 AQKVDSTKFYSVEEAIKLAKETSTVNFDASVEVAFRLGIDVRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKLKEAEAAGADFVGDSEYINKI-NQGWFDFDVIVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTMDVTKAVQEIKAGKVEYRAE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_LEPIN (50S ribosomal protein L1 OS=Leptospira interrogans GN=rplA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 7.331e-15 Identity = 50/159 (31.45%), Postives = 77/159 (48.43%), Query Frame = 1 Query: 58 KPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 + +K +S + A++ K+ + FD T+E ++ K+ +RGT++LPHG K +R LIE++A G D + C +T M + K+ IL + GLMP PK GTVT DVA+AV E K G I+++ D Sbjct: 8 RAHKEKVDSTKFFSIDKAVELAKSTSYTKFDGTLEIATKVNY---KSLQNIRGTISLPHGTGKKIRVLVFCKGDKQNDAKAAGADFVGDTDLIEKVAG-GWTDFDACVATPDMMKDVGKLGPILGRKGLMPKPKAGTVTTDVAKAVNELKAGRIEYRPD 162 The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bpback to top |