CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4782 contig Ccv1_Contig4782:524..1061. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BRUME (50S ribosomal protein L1 OS=Brucella melitensis GN=rplA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21
Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            DL  AI  VK  A A FDETVE  + L + PR  + +VRG +NLP+G  + VR                        +L E I + GK++ ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV  +K G ++F+++
Sbjct:   22 DLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE-IVNGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTTDVAAAVAASKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BRUMB (50S ribosomal protein L1 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21
Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            DL  AI  VK  A A FDETVE  + L + PR  + +VRG +NLP+G  + VR                        +L E I + GK++ ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV  +K G ++F+++
Sbjct:   22 DLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE-IVNGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTTDVAAAVAASKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BRUC2 (50S ribosomal protein L1 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21
Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            DL  AI  VK  A A FDETVE  + L + PR  + +VRG +NLP+G  + VR                        +L E I + GK++ ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV  +K G ++F+++
Sbjct:   22 DLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE-IVNGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTTDVAAAVAASKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BRUAB (50S ribosomal protein L1 OS=Brucella abortus GN=rplA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21
Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            DL  AI  VK  A A FDETVE  + L + PR  + +VRG +NLP+G  + VR                        +L E I + GK++ ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV  +K G ++F+++
Sbjct:   22 DLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE-IVNGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTTDVAAAVAASKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BRUA2 (50S ribosomal protein L1 OS=Brucella abortus (strain 2308) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21
Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            DL  AI  VK  A A FDETVE  + L + PR  + +VRG +NLP+G  + VR                        +L E I + GK++ ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV  +K G ++F+++
Sbjct:   22 DLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE-IVNGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTTDVAAAVAASKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BRUA1 (50S ribosomal protein L1 OS=Brucella abortus (strain S19) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21
Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            DL  AI  VK  A A FDETVE  + L + PR  + +VRG +NLP+G  + VR                        +L E I + GK++ ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV  +K G ++F+++
Sbjct:   22 DLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE-IVNGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTTDVAAAVAASKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_AGRRK (50S ribosomal protein L1 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21
Identity = 53/145 (36.55%), Postives = 80/145 (55.17%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L  AI  VK  A A FDET+E  + L + PR  + +VRG +NLP+G  ++VR                        +L+E I   GK+D ++C +T   MP + ++ K+L   G+MPNPK GTVT DV  AV+ +K G ++F+++
Sbjct:   21 LTQAIGMVKERAIAKFDETIEVSMNLGVDPRHADQMVRGVVNLPNGTGRSVRVAVFARGAKADEAKAAGADIVGAEELVE-IVQGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVKGAVEASKGGAVEFRVE 164          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SULSY (50S ribosomal protein L1 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.941e-21
Identity = 54/154 (35.06%), Postives = 86/154 (55.84%), Query Frame = 1
Query:   73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K+++  + + +  +K+V+   +  FDETVE   RL + P+  + +VRG++ LPHG  + ++                        ++I +IA+   +D +   +T   MP+L K+ KIL   GLMPNPK GTVT DV RAV EAK+G ++FK+D
Sbjct:   17 KEKTYSLDEAIQKLKEVEKILQRKFDETVELIFRLGVDPKYADQMVRGSVVLPHGLGRELKVLVIASGEKLKEAEEAGADYAGGEEIINKIANENWIDFDIVIATPDMMPKLAKLGKILGPRGLMPNPKVGTVTTDVKRAVTEAKKGRVEFKVD 170          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SULNB (50S ribosomal protein L1 OS=Sulfurovum sp. (strain NBC37-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.941e-21
Identity = 63/162 (38.89%), Postives = 90/162 (55.56%), Query Frame = 1
Query:   49 LLIKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            LL K ++ K+ S  V + M  +K++K+   A FDETVE  + L + PR  + +VRG++ LPHG  K VR                         LIE+I  +GK+D +   ST   M  L K++++L   GLMPNPK GTVT DVA+AV+ AK G + F++D
Sbjct:   12 LLKKVDATKEYS--VDEAMATLKELKS---AKFDETVEVALNLNVDPRHADQMVRGSVVLPHGTGKTVRVAVFAKDAKADEAKAAGADLVGAADLIEDI-QAGKIDFDIVISTPDMMGVLGKVARVLGPKGLMPNPKTGTVTMDVAKAVENAKGGQVNFRVD 167          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHOS5 (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.941e-21
Identity = 55/150 (36.67%), Postives = 81/150 (54.00%), Query Frame = 1
Query:   85 RPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            + ++ + DA+  +K  A A FDET+E  + L + PR  + +VRG + LP+G  K VR                         L+E I  SGK++ ++C +T   MP + ++ KIL    LMPNPK GTVT DVA AV  AK G ++FK++
Sbjct:   18 KDMVSVEDAVALIKGAASAKFDETLEVAMNLGVDPRHADQMVRGVVTLPNGTGKTVRVAVFARGAKADEAKAAGADIVGAEDLMETI-QSGKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTMDVAGAVGNAKGGEVQFKVE 166          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_BRUME6.846e-2137.6750S ribosomal protein L1 OS=Brucella melitensis GN... [more]
RL1_BRUMB6.846e-2137.6750S ribosomal protein L1 OS=Brucella melitensis bi... [more]
RL1_BRUC26.846e-2137.6750S ribosomal protein L1 OS=Brucella canis (strain... [more]
RL1_BRUAB6.846e-2137.6750S ribosomal protein L1 OS=Brucella abortus GN=rp... [more]
RL1_BRUA26.846e-2137.6750S ribosomal protein L1 OS=Brucella abortus (stra... [more]
RL1_BRUA16.846e-2137.6750S ribosomal protein L1 OS=Brucella abortus (stra... [more]
RL1_AGRRK6.846e-2136.5550S ribosomal protein L1 OS=Agrobacterium radiobac... [more]
RL1_SULSY8.941e-2135.0650S ribosomal protein L1 OS=Sulfurihydrogenibium s... [more]
RL1_SULNB8.941e-2138.8950S ribosomal protein L1 OS=Sulfurovum sp. (strain... [more]
RL1_RHOS58.941e-2136.6750S ribosomal protein L1 OS=Rhodobacter sphaeroide... [more]

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Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
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