CX288757
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROMT (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL2A) GN=rplA PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 8.941e-21 Identity = 53/144 (36.81%), Postives = 81/144 (56.25%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++AIK VK NA A FDET+EAH+RL I P+ T+ +R T+ LP G + +R L++ I + G+++ + ST MP++ K+ ++L GLMPNPK GTVT D+ A++E K G ++F+ D Sbjct: 23 IEAIKLVKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPSGTGQKIRIAVVTRGEKVNEATKAGADLAGEEDLVDSI-NKGEMNFDLLISTPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLEGAIKEFKAGKLEFRAD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROM1 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL1A) GN=rplA PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 8.941e-21 Identity = 53/144 (36.81%), Postives = 81/144 (56.25%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++AIK VK NA A FDET+EAH+RL I P+ T+ +R T+ LP G + +R L++ I + G+++ + ST MP++ K+ ++L GLMPNPK GTVT D+ A++E K G ++F+ D Sbjct: 23 IEAIKLVKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPSGTGQKIRIAVVTRGEKVNEATKAGADLAGEEDLVDSI-NKGEMNFDLLISTPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLEGAIKEFKAGKLEFRAD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_METNO (50S ribosomal protein L1 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplA PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 8.941e-21 Identity = 55/148 (37.16%), Postives = 78/148 (52.70%), Query Frame = 1 Query: 91 VLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 V L DA+K +K AKA FDET E + L + PR + +VRG NLP+G + VR L+E I G ++ ++C +T MP + ++ K+L GLMPNPK GTVT DV AV AK G ++F+++ Sbjct: 20 VYSLADAVKLIKERAKAKFDETFEISMNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADEAKAAGADIVGAEDLLETI-QGGTINFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVGAAKGGAVEFRVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_DINSH (50S ribosomal protein L1 OS=Dinoroseobacter shibae (strain DFL 12) GN=rplA PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 8.941e-21 Identity = 56/147 (38.10%), Postives = 81/147 (55.10%), Query Frame = 1 Query: 94 LDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L + +A+ +KANA + FDETVE + L + PR + +VRG ++LP+G K VR L+E I SGK++ ++C +T MP + ++ KIL LMPNPK GTVT DV AV+ AK G ++FK + Sbjct: 21 LTVEEAVALIKANATSKFDETVEIAMCLGVDPRHADQMVRGVVSLPNGTGKTVRVAVFARGPKAEEAQAAGADIVGAEDLMETI-QSGKIEFDRCIATPDMMPIVGRLGKILGPRNLMPNPKVGTVTMDVKAAVEAAKGGEVQFKAE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CORK4 (50S ribosomal protein L1 OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=rplA PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 8.941e-21 Identity = 53/144 (36.81%), Postives = 81/144 (56.25%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +DA+K VK A +++D TV+ +RL + PRK + +VRGT++LP+G K VR +L+E I G D + +T M ++ +++++L GLMPNPK GTVT DV +AV+E K G I F++D Sbjct: 24 IDAMKTVKETAYSSYDPTVDVAIRLGVDPRKADQLVRGTVSLPNGTGKEVRVVVFAEGPNATAAEEAGADVVGTAELVERI-QGGWTDFDAAIATPDQMAKVGRVARVLGPRGLMPNPKTGTVTTDVTKAVKEIKGGKISFRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BRASB (50S ribosomal protein L1 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplA PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 8.941e-21 Identity = 51/145 (35.17%), Postives = 81/145 (55.86%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L DAIK +K A + FDET+E + L + PR + +VRG + LP+G + +R L+E++ +G +D ++C +T MP + ++ K+L G+MPNPK GTVT DVA AV+ AK G ++F+++ Sbjct: 22 LADAIKMIKERAVSKFDETIEVAINLGVDPRHADQMVRGVVMLPNGTGRTLRVGVFARGAKAEEAKAAGADVVGAEDLVEKV-QNGNIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVAGAVKGAKGGSVEFRVE 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHOSK (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rplA PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.168e-20 Identity = 54/150 (36.00%), Postives = 81/150 (54.00%), Query Frame = 1 Query: 85 RPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 + ++ + DA+ +K A A FDET+E + L + PR + +VRG + LP+G K VR L+E I SGK++ ++C +T MP + ++ KIL LMPNPK GTVT DV AV+ AK G ++FK++ Sbjct: 18 KDLISVEDAVALIKQAASAKFDETLEVAMNLGVDPRHADQMVRGVVTLPNGTGKTVRVAVFARGAKADEAKAAGADIVGAEDLMETI-QSGKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTMDVKSAVEAAKGGEVQFKVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHOS4 (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplA PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.168e-20 Identity = 54/150 (36.00%), Postives = 81/150 (54.00%), Query Frame = 1 Query: 85 RPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 + ++ + DA+ +K A A FDET+E + L + PR + +VRG + LP+G K VR L+E I SGK++ ++C +T MP + ++ KIL LMPNPK GTVT DV AV+ AK G ++FK++ Sbjct: 18 KDLISVEDAVALIKQAASAKFDETLEVAMNLGVDPRHADQMVRGVVTLPNGTGKTVRVAVFARGAKADEAKAAGADIVGAEDLMETI-QSGKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTMDVKSAVEAAKGGEVQFKVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHOS1 (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rplA1 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.168e-20 Identity = 54/150 (36.00%), Postives = 81/150 (54.00%), Query Frame = 1 Query: 85 RPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 + ++ + DA+ +K A A FDET+E + L + PR + +VRG + LP+G K VR L+E I SGK++ ++C +T MP + ++ KIL LMPNPK GTVT DV AV+ AK G ++FK++ Sbjct: 18 KDLISVEDAVALIKQAASAKFDETLEVAMNLGVDPRHADQMVRGVVTLPNGTGKTVRVAVFARGAKADEAKAAGADIVGAEDLMETI-QSGKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTMDVKSAVEAAKGGEVQFKVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHIE6 (50S ribosomal protein L1 OS=Rhizobium etli (strain CIAT 652) GN=rplA PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.168e-20 Identity = 53/145 (36.55%), Postives = 79/145 (54.48%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L AI VK A A FDET+E + L + PR + +VRG +NLP+G + VR L+E I GK++ ++C +T MP + ++ K+L G+MPNPK GTVT DVA AV+ +K G ++F+++ Sbjct: 21 LTQAIGMVKERAVAKFDETIEVSMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGAKADEAKAAGADVVGAEDLVE-IVQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVE 164 The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bpback to top |