CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROMT (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL2A) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.941e-21
Identity = 53/144 (36.81%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++AIK VK NA A FDET+EAH+RL I P+ T+  +R T+ LP G  + +R                         L++ I + G+++ +   ST   MP++ K+ ++L   GLMPNPK GTVT D+  A++E K G ++F+ D
Sbjct:   23 IEAIKLVKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPSGTGQKIRIAVVTRGEKVNEATKAGADLAGEEDLVDSI-NKGEMNFDLLISTPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLEGAIKEFKAGKLEFRAD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROM1 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL1A) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.941e-21
Identity = 53/144 (36.81%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++AIK VK NA A FDET+EAH+RL I P+ T+  +R T+ LP G  + +R                         L++ I + G+++ +   ST   MP++ K+ ++L   GLMPNPK GTVT D+  A++E K G ++F+ D
Sbjct:   23 IEAIKLVKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPSGTGQKIRIAVVTRGEKVNEATKAGADLAGEEDLVDSI-NKGEMNFDLLISTPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLEGAIKEFKAGKLEFRAD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_METNO (50S ribosomal protein L1 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.941e-21
Identity = 55/148 (37.16%), Postives = 78/148 (52.70%), Query Frame = 1
Query:   91 VLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            V  L DA+K +K  AKA FDET E  + L + PR  + +VRG  NLP+G  + VR                         L+E I   G ++ ++C +T   MP + ++ K+L   GLMPNPK GTVT DV  AV  AK G ++F+++
Sbjct:   20 VYSLADAVKLIKERAKAKFDETFEISMNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADEAKAAGADIVGAEDLLETI-QGGTINFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVGAAKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_DINSH (50S ribosomal protein L1 OS=Dinoroseobacter shibae (strain DFL 12) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.941e-21
Identity = 56/147 (38.10%), Postives = 81/147 (55.10%), Query Frame = 1
Query:   94 LDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L + +A+  +KANA + FDETVE  + L + PR  + +VRG ++LP+G  K VR                         L+E I  SGK++ ++C +T   MP + ++ KIL    LMPNPK GTVT DV  AV+ AK G ++FK +
Sbjct:   21 LTVEEAVALIKANATSKFDETVEIAMCLGVDPRHADQMVRGVVSLPNGTGKTVRVAVFARGPKAEEAQAAGADIVGAEDLMETI-QSGKIEFDRCIATPDMMPIVGRLGKILGPRNLMPNPKVGTVTMDVKAAVEAAKGGEVQFKAE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CORK4 (50S ribosomal protein L1 OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.941e-21
Identity = 53/144 (36.81%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +DA+K VK  A +++D TV+  +RL + PRK + +VRGT++LP+G  K VR                        +L+E I   G  D +   +T   M ++ +++++L   GLMPNPK GTVT DV +AV+E K G I F++D
Sbjct:   24 IDAMKTVKETAYSSYDPTVDVAIRLGVDPRKADQLVRGTVSLPNGTGKEVRVVVFAEGPNATAAEEAGADVVGTAELVERI-QGGWTDFDAAIATPDQMAKVGRVARVLGPRGLMPNPKTGTVTTDVTKAVKEIKGGKISFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BRASB (50S ribosomal protein L1 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.941e-21
Identity = 51/145 (35.17%), Postives = 81/145 (55.86%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L DAIK +K  A + FDET+E  + L + PR  + +VRG + LP+G  + +R                         L+E++  +G +D ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV+ AK G ++F+++
Sbjct:   22 LADAIKMIKERAVSKFDETIEVAINLGVDPRHADQMVRGVVMLPNGTGRTLRVGVFARGAKAEEAKAAGADVVGAEDLVEKV-QNGNIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVAGAVKGAKGGSVEFRVE 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHOSK (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.168e-20
Identity = 54/150 (36.00%), Postives = 81/150 (54.00%), Query Frame = 1
Query:   85 RPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            + ++ + DA+  +K  A A FDET+E  + L + PR  + +VRG + LP+G  K VR                         L+E I  SGK++ ++C +T   MP + ++ KIL    LMPNPK GTVT DV  AV+ AK G ++FK++
Sbjct:   18 KDLISVEDAVALIKQAASAKFDETLEVAMNLGVDPRHADQMVRGVVTLPNGTGKTVRVAVFARGAKADEAKAAGADIVGAEDLMETI-QSGKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTMDVKSAVEAAKGGEVQFKVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHOS4 (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.168e-20
Identity = 54/150 (36.00%), Postives = 81/150 (54.00%), Query Frame = 1
Query:   85 RPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            + ++ + DA+  +K  A A FDET+E  + L + PR  + +VRG + LP+G  K VR                         L+E I  SGK++ ++C +T   MP + ++ KIL    LMPNPK GTVT DV  AV+ AK G ++FK++
Sbjct:   18 KDLISVEDAVALIKQAASAKFDETLEVAMNLGVDPRHADQMVRGVVTLPNGTGKTVRVAVFARGAKADEAKAAGADIVGAEDLMETI-QSGKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTMDVKSAVEAAKGGEVQFKVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHOS1 (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rplA1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.168e-20
Identity = 54/150 (36.00%), Postives = 81/150 (54.00%), Query Frame = 1
Query:   85 RPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            + ++ + DA+  +K  A A FDET+E  + L + PR  + +VRG + LP+G  K VR                         L+E I  SGK++ ++C +T   MP + ++ KIL    LMPNPK GTVT DV  AV+ AK G ++FK++
Sbjct:   18 KDLISVEDAVALIKQAASAKFDETLEVAMNLGVDPRHADQMVRGVVTLPNGTGKTVRVAVFARGAKADEAKAAGADIVGAEDLMETI-QSGKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTMDVKSAVEAAKGGEVQFKVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHIE6 (50S ribosomal protein L1 OS=Rhizobium etli (strain CIAT 652) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.168e-20
Identity = 53/145 (36.55%), Postives = 79/145 (54.48%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L  AI  VK  A A FDET+E  + L + PR  + +VRG +NLP+G  + VR                         L+E I   GK++ ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV+ +K G ++F+++
Sbjct:   21 LTQAIGMVKERAVAKFDETIEVSMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGAKADEAKAAGADVVGAEDLVE-IVQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVE 164          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_PROMT8.941e-2136.8150S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM18.941e-2136.8150S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_METNO8.941e-2137.1650S ribosomal protein L1 OS=Methylobacterium nodul... [more]
RL1_DINSH8.941e-2138.1050S ribosomal protein L1 OS=Dinoroseobacter shibae... [more]
RL1_CORK48.941e-2136.8150S ribosomal protein L1 OS=Corynebacterium kroppe... [more]
RL1_BRASB8.941e-2135.1750S ribosomal protein L1 OS=Bradyrhizobium sp. (st... [more]
RL1_RHOSK1.168e-2036.0050S ribosomal protein L1 OS=Rhodobacter sphaeroide... [more]
RL1_RHOS41.168e-2036.0050S ribosomal protein L1 OS=Rhodobacter sphaeroide... [more]
RL1_RHOS11.168e-2036.0050S ribosomal protein L1 OS=Rhodobacter sphaeroide... [more]
RL1_RHIE61.168e-2036.5550S ribosomal protein L1 OS=Rhizobium etli (strain... [more]

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Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
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