CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4782 contig Ccv1_Contig4782:524..1061. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_JANSC (50S ribosomal protein L1 OS=Jannaschia sp. (strain CCS1) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.168e-20
Identity = 52/152 (34.21%), Postives = 82/152 (53.95%), Query Frame = 1
Query:   79 ESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            E +  + + +A+  +K N+K  FDET+E  ++L + PR  + +VRGT+NLP+G  K VR                         L+E +   G ++ ++C +T   MP + ++ K+L    LMPNPK GTVT DV  AV+ AK G ++FK +
Sbjct:   16 EGKENITVEEAVALLKGNSKTKFDETIEIAMKLGVDPRHADQMVRGTVNLPNGTGKTVRVAVFARGPKAEEATAAGADIVGAEDLMETV-QGGTIEFDRCIATPDMMPIVGRLGKVLGPRNLMPNPKIGTVTMDVKEAVEAAKGGQVQFKAE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_HELHP (50S ribosomal protein L1 OS=Helicobacter hepaticus GN=rplA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.168e-20
Identity = 57/154 (37.01%), Postives = 79/154 (51.30%), Query Frame = 1
Query:   73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K E + V  +   +  VK+ A A FDETVE  +RL + PR  + ++RG + LPHG  K VR                         L EEI  +G ++ +   +T   M  + K+ +IL   GLMPNPK GTVT DVA+AV  AK G + F++D
Sbjct:   15 KVEPQKVYSIQSGVSAVKSLASAKFDETVEVALRLGVDPRHADQMIRGAVVLPHGTGKKVRVAVFAKGIKADEAKNAGADVVGADDLAEEI-KNGNINFDMVIATPDMMALVGKVGRILGPKGLMPNPKTGTVTIDVAKAVANAKSGQVNFRVD 167          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_DESAA (50S ribosomal protein L1 OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.168e-20
Identity = 62/158 (39.24%), Postives = 86/158 (54.43%), Query Frame = 1
Query:   64 ESKKKESRPV-LDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ESKKK +R +   +++A++    ++ A FDETV+  VRL + PR  + +VRGT  LPHG  K VR                         L+E+I   G LD +K  +T   M  + K+ +IL   GLMPN K GTVT DVA+AVQE K G I F+++
Sbjct:   10 ESKKKVNRDLKYGVLEALQTAIESSYAKFDETVDVAVRLGVDPRHADQMVRGTCVLPHGTGKDVRVLVFAKGEKEAEAKEAGADFVGNDDLVEKI-QGGWLDFDKAIATPDMMGTVGKMGRILGPRGLMPNAKTGTVTFDVAKAVQELKAGKIDFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_STRAU (50S ribosomal protein L1 OS=Streptomyces aureofaciens GN=rplA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.525e-20
Identity = 54/145 (37.24%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKL-DVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++A++  K  +   FD TVE   RL + PRK + +VRGT+NLPHG  K  R                        +LI EIA   +L + +   +T   M ++ ++ ++L   GLMPNPK GTVT DVA+AV E K G I+F++D
Sbjct:   23 LEAVRLAKETSATKFDSTVEVAFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDRAAAAEAAGADIVGDDELINEIAKGNRLNEFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTMDVAKAVTEIKGGKIEFRVD 167          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHIEC (50S ribosomal protein L1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.525e-20
Identity = 53/145 (36.55%), Postives = 79/145 (54.48%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L  AI  VK  A A FDET+E  + L + PR  + +VRG +NLP+G  + VR                         L+E I   GK++ ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV+ +K G ++F+++
Sbjct:   21 LTTAIGMVKERAVAKFDETIEVSMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGAKADEAKAAGADVVGAEDLVE-IVQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVE 164          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MARMM (50S ribosomal protein L1 OS=Maricaulis maris (strain MCS10) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.525e-20
Identity = 51/143 (35.66%), Postives = 80/143 (55.94%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            DA+  VK+NAKA FDET+E  + L + PR  + +VRG  NLP+G  ++VR                         L+E+I   G ++ +K  +T   MP + ++ K+L   G+MPNPK GTVT  V +AV ++K G ++F+++
Sbjct:   25 DAVAHVKSNAKAKFDETIELAINLGVDPRHADQMVRGVCNLPNGTGRSVRVAVFAKGPKAEEATKAGADVVGAEDLMEQI-QGGNINFDKVIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMGVTKAVNDSKGGAVEFRVE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_HELAH (50S ribosomal protein L1 OS=Helicobacter acinonychis (strain Sheeba) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.525e-20
Identity = 58/154 (37.66%), Postives = 80/154 (51.95%), Query Frame = 1
Query:   73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K ++  V  +   +  VK+ A A FDETVE  +RL + PR  + +VRG + LPHG  K VR                         L EEI  +G++D +   +T   M  + K+ +IL   GLMPNPK GTVT D+A+AV  AK G + FK+D
Sbjct:   15 KIQNDKVYGVEQGVGAVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEI-KNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFKVD 167          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_THEM4 (50S ribosomal protein L1 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.992e-20
Identity = 56/146 (38.36%), Postives = 77/146 (52.74%), Query Frame = 1
Query:   97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            DL +A+   K  A A FDETVE H++  I  RK++  +R T++LPHG  K VR                         L E+I   G LD +   +T   M  + ++ KIL   GLMPNPK GTVTNDVA AV++ K+G ++ + D
Sbjct:   22 DLNEAVDLAKKVATAKFDETVELHIKTNIDYRKSDQQIRSTISLPHGTGKEVRVLVFAKGEKAEEAKKAGADYVGAEDLAEKIQKEGFLDFDVAIATPDMMKIIGRLGKILGPRGLMPNPKAGTVTNDVAAAVKDFKKGRMEIRTD 167          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MYCSS (50S ribosomal protein L1 OS=Mycobacterium sp. (strain MCS) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.992e-20
Identity = 57/156 (36.54%), Postives = 81/156 (51.92%), Query Frame = 1
Query:   67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++K +   +   ++A K  K  +    D TVE  +RL + PRK + +VRGT+NLPHG  K  R                         LIE+I   G LD +   +T   M ++ +I++IL   GLMPNPK GTVT DVA+AV + K G I F++D
Sbjct:   12 AEKVDKTKLYSPLEAAKLAKETSSKKQDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKTARVAVFAVGDKAEQAAAAGADIVGSDDLIEQI-QGGMLDFDAAIATPDQMAKVGRIARILGPRGLMPNPKTGTVTADVAKAVSDIKGGKINFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MYCSK (50S ribosomal protein L1 OS=Mycobacterium sp. (strain KMS) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.992e-20
Identity = 57/156 (36.54%), Postives = 81/156 (51.92%), Query Frame = 1
Query:   67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++K +   +   ++A K  K  +    D TVE  +RL + PRK + +VRGT+NLPHG  K  R                         LIE+I   G LD +   +T   M ++ +I++IL   GLMPNPK GTVT DVA+AV + K G I F++D
Sbjct:   12 AEKVDKTKLYSPLEAAKLAKETSSKKQDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKTARVAVFAVGDKAEQAAAAGADIVGSDDLIEQI-QGGMLDFDAAIATPDQMAKVGRIARILGPRGLMPNPKTGTVTADVAKAVSDIKGGKINFRVD 166          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_JANSC1.168e-2034.2150S ribosomal protein L1 OS=Jannaschia sp. (strain... [more]
RL1_HELHP1.168e-2037.0150S ribosomal protein L1 OS=Helicobacter hepaticus... [more]
RL1_DESAA1.168e-2039.2450S ribosomal protein L1 OS=Desulfatibacillum alke... [more]
RL1_STRAU1.525e-2037.2450S ribosomal protein L1 OS=Streptomyces aureofaci... [more]
RL1_RHIEC1.525e-2036.5550S ribosomal protein L1 OS=Rhizobium etli (strain... [more]
RL1_MARMM1.525e-2035.6650S ribosomal protein L1 OS=Maricaulis maris (stra... [more]
RL1_HELAH1.525e-2037.6650S ribosomal protein L1 OS=Helicobacter acinonych... [more]
RL1_THEM41.992e-2038.3650S ribosomal protein L1 OS=Thermosipho melanesien... [more]
RL1_MYCSS1.992e-2036.5450S ribosomal protein L1 OS=Mycobacterium sp. (str... [more]
RL1_MYCSK1.992e-2036.5450S ribosomal protein L1 OS=Mycobacterium sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
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