CX288757
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_JANSC (50S ribosomal protein L1 OS=Jannaschia sp. (strain CCS1) GN=rplA PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.168e-20 Identity = 52/152 (34.21%), Postives = 82/152 (53.95%), Query Frame = 1 Query: 79 ESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 E + + + +A+ +K N+K FDET+E ++L + PR + +VRGT+NLP+G K VR L+E + G ++ ++C +T MP + ++ K+L LMPNPK GTVT DV AV+ AK G ++FK + Sbjct: 16 EGKENITVEEAVALLKGNSKTKFDETIEIAMKLGVDPRHADQMVRGTVNLPNGTGKTVRVAVFARGPKAEEATAAGADIVGAEDLMETV-QGGTIEFDRCIATPDMMPIVGRLGKVLGPRNLMPNPKIGTVTMDVKEAVEAAKGGQVQFKAE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_HELHP (50S ribosomal protein L1 OS=Helicobacter hepaticus GN=rplA PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.168e-20 Identity = 57/154 (37.01%), Postives = 79/154 (51.30%), Query Frame = 1 Query: 73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 K E + V + + VK+ A A FDETVE +RL + PR + ++RG + LPHG K VR L EEI +G ++ + +T M + K+ +IL GLMPNPK GTVT DVA+AV AK G + F++D Sbjct: 15 KVEPQKVYSIQSGVSAVKSLASAKFDETVEVALRLGVDPRHADQMIRGAVVLPHGTGKKVRVAVFAKGIKADEAKNAGADVVGADDLAEEI-KNGNINFDMVIATPDMMALVGKVGRILGPKGLMPNPKTGTVTIDVAKAVANAKSGQVNFRVD 167
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_DESAA (50S ribosomal protein L1 OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rplA PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.168e-20 Identity = 62/158 (39.24%), Postives = 86/158 (54.43%), Query Frame = 1 Query: 64 ESKKKESRPV-LDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ESKKK +R + +++A++ ++ A FDETV+ VRL + PR + +VRGT LPHG K VR L+E+I G LD +K +T M + K+ +IL GLMPN K GTVT DVA+AVQE K G I F+++ Sbjct: 10 ESKKKVNRDLKYGVLEALQTAIESSYAKFDETVDVAVRLGVDPRHADQMVRGTCVLPHGTGKDVRVLVFAKGEKEAEAKEAGADFVGNDDLVEKI-QGGWLDFDKAIATPDMMGTVGKMGRILGPRGLMPNAKTGTVTFDVAKAVQELKAGKIDFRVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_STRAU (50S ribosomal protein L1 OS=Streptomyces aureofaciens GN=rplA PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.525e-20 Identity = 54/145 (37.24%), Postives = 78/145 (53.79%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKL-DVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++A++ K + FD TVE RL + PRK + +VRGT+NLPHG K R +LI EIA +L + + +T M ++ ++ ++L GLMPNPK GTVT DVA+AV E K G I+F++D Sbjct: 23 LEAVRLAKETSATKFDSTVEVAFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDRAAAAEAAGADIVGDDELINEIAKGNRLNEFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTMDVAKAVTEIKGGKIEFRVD 167
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHIEC (50S ribosomal protein L1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplA PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.525e-20 Identity = 53/145 (36.55%), Postives = 79/145 (54.48%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L AI VK A A FDET+E + L + PR + +VRG +NLP+G + VR L+E I GK++ ++C +T MP + ++ K+L G+MPNPK GTVT DVA AV+ +K G ++F+++ Sbjct: 21 LTTAIGMVKERAVAKFDETIEVSMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGAKADEAKAAGADVVGAEDLVE-IVQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVE 164
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MARMM (50S ribosomal protein L1 OS=Maricaulis maris (strain MCS10) GN=rplA PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.525e-20 Identity = 51/143 (35.66%), Postives = 80/143 (55.94%), Query Frame = 1 Query: 106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 DA+ VK+NAKA FDET+E + L + PR + +VRG NLP+G ++VR L+E+I G ++ +K +T MP + ++ K+L G+MPNPK GTVT V +AV ++K G ++F+++ Sbjct: 25 DAVAHVKSNAKAKFDETIELAINLGVDPRHADQMVRGVCNLPNGTGRSVRVAVFAKGPKAEEATKAGADVVGAEDLMEQI-QGGNINFDKVIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMGVTKAVNDSKGGAVEFRVE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_HELAH (50S ribosomal protein L1 OS=Helicobacter acinonychis (strain Sheeba) GN=rplA PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.525e-20 Identity = 58/154 (37.66%), Postives = 80/154 (51.95%), Query Frame = 1 Query: 73 KKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 K ++ V + + VK+ A A FDETVE +RL + PR + +VRG + LPHG K VR L EEI +G++D + +T M + K+ +IL GLMPNPK GTVT D+A+AV AK G + FK+D Sbjct: 15 KIQNDKVYGVEQGVGAVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEI-KNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFKVD 167
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_THEM4 (50S ribosomal protein L1 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplA PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.992e-20 Identity = 56/146 (38.36%), Postives = 77/146 (52.74%), Query Frame = 1 Query: 97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 DL +A+ K A A FDETVE H++ I RK++ +R T++LPHG K VR L E+I G LD + +T M + ++ KIL GLMPNPK GTVTNDVA AV++ K+G ++ + D Sbjct: 22 DLNEAVDLAKKVATAKFDETVELHIKTNIDYRKSDQQIRSTISLPHGTGKEVRVLVFAKGEKAEEAKKAGADYVGAEDLAEKIQKEGFLDFDVAIATPDMMKIIGRLGKILGPRGLMPNPKAGTVTNDVAAAVKDFKKGRMEIRTD 167
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MYCSS (50S ribosomal protein L1 OS=Mycobacterium sp. (strain MCS) GN=rplA PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.992e-20 Identity = 57/156 (36.54%), Postives = 81/156 (51.92%), Query Frame = 1 Query: 67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++K + + ++A K K + D TVE +RL + PRK + +VRGT+NLPHG K R LIE+I G LD + +T M ++ +I++IL GLMPNPK GTVT DVA+AV + K G I F++D Sbjct: 12 AEKVDKTKLYSPLEAAKLAKETSSKKQDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKTARVAVFAVGDKAEQAAAAGADIVGSDDLIEQI-QGGMLDFDAAIATPDQMAKVGRIARILGPRGLMPNPKTGTVTADVAKAVSDIKGGKINFRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MYCSK (50S ribosomal protein L1 OS=Mycobacterium sp. (strain KMS) GN=rplA PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.992e-20 Identity = 57/156 (36.54%), Postives = 81/156 (51.92%), Query Frame = 1 Query: 67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++K + + ++A K K + D TVE +RL + PRK + +VRGT+NLPHG K R LIE+I G LD + +T M ++ +I++IL GLMPNPK GTVT DVA+AV + K G I F++D Sbjct: 12 AEKVDKTKLYSPLEAAKLAKETSSKKQDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKTARVAVFAVGDKAEQAAAAGADIVGSDDLIEQI-QGGMLDFDAAIATPDQMAKVGRIARILGPRGLMPNPKTGTVTADVAKAVSDIKGGKINFRVD 166 The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bpback to top |