CX288757
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MYCSJ (50S ribosomal protein L1 OS=Mycobacterium sp. (strain JLS) GN=rplA PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.992e-20 Identity = 57/156 (36.54%), Postives = 81/156 (51.92%), Query Frame = 1 Query: 67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++K + + ++A K K + D TVE +RL + PRK + +VRGT+NLPHG K R LIE+I G LD + +T M ++ +I++IL GLMPNPK GTVT DVA+AV + K G I F++D Sbjct: 12 AEKVDKTKLYSPLEAAKLAKETSSKKQDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKTARVAVFAVGDKAEQAAAAGADIVGSDDLIEQI-QGGMLDFDAAIATPDQMAKVGRIARILGPRGLMPNPKTGTVTADVAKAVSDIKGGKINFRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BRASO (50S ribosomal protein L1 OS=Bradyrhizobium sp. (strain ORS278) GN=rplA PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.992e-20 Identity = 50/145 (34.48%), Postives = 80/145 (55.17%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L DAIK +K A + FDET+E + L + PR + +VRG + LP+G + +R L+E++ +G +D ++C +T MP + ++ K+L G+MPNPK GTVT DV AV+ AK G ++F+++ Sbjct: 22 LADAIKMIKERATSKFDETIEVAINLGVDPRHADQMVRGVVMLPNGTGRTLRVGVFARGAKAEEAKAAGADVVGAEDLVEKV-QNGNIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVTGAVKGAKGGSVEFRVE 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_STRVG (50S ribosomal protein L1 OS=Streptomyces virginiae GN=rplA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.602e-20 Identity = 54/145 (37.24%), Postives = 78/145 (53.79%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKL-DVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++A++ K + FD TVE RL + PRK + +VRGT+NLPHG K R +LI EIA +L + + +T M ++ ++ ++L GLMPNPK GTVT DVA+AV E K G I+F++D Sbjct: 23 LEAVRLAKETSTTKFDGTVEVAFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDRAAAAEAAGADIVGDDELINEIAKGNRLNEFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTMDVAKAVTEIKGGKIEFRVD 167
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_STRGR (50S ribosomal protein L1 OS=Streptomyces griseus GN=rplA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.602e-20 Identity = 52/144 (36.11%), Postives = 78/144 (54.17%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++A++ K + FD TVE L + PRK + +VRGT+NLPHG K R +LI+E+A G+LD + +T M ++ ++ ++L GLMPNPK GTVT DV +AV + K G I+F++D Sbjct: 23 LEAVRLAKETSSTKFDGTVEVAFALGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDRAAAAEAAGADIVGADELIDEVAK-GRLDFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTPDVVKAVNDIKGGKIEFRVD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_STRGG (50S ribosomal protein L1 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rplA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.602e-20 Identity = 52/144 (36.11%), Postives = 78/144 (54.17%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++A++ K + FD TVE L + PRK + +VRGT+NLPHG K R +LI+E+A G+LD + +T M ++ ++ ++L GLMPNPK GTVT DV +AV + K G I+F++D Sbjct: 23 LEAVRLAKETSSTKFDGTVEVAFALGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDRAAAAEAAGADIVGADELIDEVAK-GRLDFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTPDVVKAVNDIKGGKIEFRVD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHILW (50S ribosomal protein L1 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.602e-20 Identity = 52/142 (36.62%), Postives = 78/142 (54.93%), Query Frame = 1 Query: 109 AIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 AI VK A A FDET+E + L + PR + +VRG +NLP+G + VR L+E I GK++ ++C +T MP + ++ K+L G+MPNPK GTVT DVA AV+ +K G ++F+++ Sbjct: 24 AIGMVKERAVAKFDETIEVSMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGVKADEAKAAGADIVGAEDLVE-IVQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVE 164
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHIL3 (50S ribosomal protein L1 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.602e-20 Identity = 52/142 (36.62%), Postives = 78/142 (54.93%), Query Frame = 1 Query: 109 AIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 AI VK A A FDET+E + L + PR + +VRG +NLP+G + VR L+E I GK++ ++C +T MP + ++ K+L G+MPNPK GTVT DVA AV+ +K G ++F+++ Sbjct: 24 AIGMVKERAVAKFDETIEVSMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGAKADEAKAAGADIVGAEDLVE-IVQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVE 164
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MYCVP (50S ribosomal protein L1 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=rplA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.602e-20 Identity = 58/159 (36.48%), Postives = 82/159 (51.57%), Query Frame = 1 Query: 58 KPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 K ++K + + ++A K K + D TVE +RL + PRK + +VRGT+NLPHG K R LIE+I G LD + +T M ++ +I++IL GLMPNPK GTVT DVA+AV + K G I F++D Sbjct: 9 KEAAEKVDKTRLYSPLEAAKLAKETSSKKQDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKTARVAVFAVGDKAEQAEAAGADIVGSDDLIEKI-QGGFLDFDAAIATPDQMAKVGRIARILGPRGLMPNPKTGTVTPDVAKAVSDIKGGKINFRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MYCS2 (50S ribosomal protein L1 OS=Mycobacterium smegmatis GN=rplA PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.602e-20 Identity = 56/144 (38.89%), Postives = 77/144 (53.47%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++A K K + D TVE +RL + PRK + +VRGT+NLPHG K R LIE+I G LD + +T M ++ +I+++L GLMPNPK GTVT DVA+AVQ+ K G I F++D Sbjct: 24 LEAAKLAKETSSKKQDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKTARVAVFAVGEKAEQAQAAGADIVGSDDLIEKI-QGGFLDFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTPDVAKAVQDIKGGKINFRVD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CHLPD (50S ribosomal protein L1 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rplA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.602e-20 Identity = 53/146 (36.30%), Postives = 82/146 (56.16%), Query Frame = 1 Query: 97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 DL+DA+++++ + FD T++ ++L + PR + +VRGT+ LPHG K V + +E+I +G V+ +T M +L K++KIL GLMPNPK GTVT DVA+AV+E K G I+F++D Sbjct: 20 DLVDAVEKIREITQVKFDATIDIAMKLGVDPRHADQVVRGTVMLPHGTGKTVSVLVVCKEAKAEEAVAAGADFVGFEEYVEKI-QNGWTGVDVIIATPDVMGQLGKVAKILGPRGLMPNPKSGTVTMDVAKAVKEVKAGKIEFRVD 164 The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bpback to top |