CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MYCSJ (50S ribosomal protein L1 OS=Mycobacterium sp. (strain JLS) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.992e-20
Identity = 57/156 (36.54%), Postives = 81/156 (51.92%), Query Frame = 1
Query:   67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++K +   +   ++A K  K  +    D TVE  +RL + PRK + +VRGT+NLPHG  K  R                         LIE+I   G LD +   +T   M ++ +I++IL   GLMPNPK GTVT DVA+AV + K G I F++D
Sbjct:   12 AEKVDKTKLYSPLEAAKLAKETSSKKQDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKTARVAVFAVGDKAEQAAAAGADIVGSDDLIEQI-QGGMLDFDAAIATPDQMAKVGRIARILGPRGLMPNPKTGTVTADVAKAVSDIKGGKINFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_BRASO (50S ribosomal protein L1 OS=Bradyrhizobium sp. (strain ORS278) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.992e-20
Identity = 50/145 (34.48%), Postives = 80/145 (55.17%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L DAIK +K  A + FDET+E  + L + PR  + +VRG + LP+G  + +R                         L+E++  +G +D ++C +T   MP + ++ K+L   G+MPNPK GTVT DV  AV+ AK G ++F+++
Sbjct:   22 LADAIKMIKERATSKFDETIEVAINLGVDPRHADQMVRGVVMLPNGTGRTLRVGVFARGAKAEEAKAAGADVVGAEDLVEKV-QNGNIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVTGAVKGAKGGSVEFRVE 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_STRVG (50S ribosomal protein L1 OS=Streptomyces virginiae GN=rplA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.602e-20
Identity = 54/145 (37.24%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKL-DVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++A++  K  +   FD TVE   RL + PRK + +VRGT+NLPHG  K  R                        +LI EIA   +L + +   +T   M ++ ++ ++L   GLMPNPK GTVT DVA+AV E K G I+F++D
Sbjct:   23 LEAVRLAKETSTTKFDGTVEVAFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDRAAAAEAAGADIVGDDELINEIAKGNRLNEFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTMDVAKAVTEIKGGKIEFRVD 167          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_STRGR (50S ribosomal protein L1 OS=Streptomyces griseus GN=rplA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.602e-20
Identity = 52/144 (36.11%), Postives = 78/144 (54.17%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++A++  K  +   FD TVE    L + PRK + +VRGT+NLPHG  K  R                        +LI+E+A  G+LD +   +T   M ++ ++ ++L   GLMPNPK GTVT DV +AV + K G I+F++D
Sbjct:   23 LEAVRLAKETSSTKFDGTVEVAFALGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDRAAAAEAAGADIVGADELIDEVAK-GRLDFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTPDVVKAVNDIKGGKIEFRVD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_STRGG (50S ribosomal protein L1 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.602e-20
Identity = 52/144 (36.11%), Postives = 78/144 (54.17%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++A++  K  +   FD TVE    L + PRK + +VRGT+NLPHG  K  R                        +LI+E+A  G+LD +   +T   M ++ ++ ++L   GLMPNPK GTVT DV +AV + K G I+F++D
Sbjct:   23 LEAVRLAKETSSTKFDGTVEVAFALGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDRAAAAEAAGADIVGADELIDEVAK-GRLDFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTPDVVKAVNDIKGGKIEFRVD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHILW (50S ribosomal protein L1 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.602e-20
Identity = 52/142 (36.62%), Postives = 78/142 (54.93%), Query Frame = 1
Query:  109 AIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            AI  VK  A A FDET+E  + L + PR  + +VRG +NLP+G  + VR                         L+E I   GK++ ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV+ +K G ++F+++
Sbjct:   24 AIGMVKERAVAKFDETIEVSMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGVKADEAKAAGADIVGAEDLVE-IVQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVE 164          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_RHIL3 (50S ribosomal protein L1 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.602e-20
Identity = 52/142 (36.62%), Postives = 78/142 (54.93%), Query Frame = 1
Query:  109 AIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            AI  VK  A A FDET+E  + L + PR  + +VRG +NLP+G  + VR                         L+E I   GK++ ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV+ +K G ++F+++
Sbjct:   24 AIGMVKERAVAKFDETIEVSMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGAKADEAKAAGADIVGAEDLVE-IVQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVE 164          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MYCVP (50S ribosomal protein L1 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.602e-20
Identity = 58/159 (36.48%), Postives = 82/159 (51.57%), Query Frame = 1
Query:   58 KPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            K  ++K +   +   ++A K  K  +    D TVE  +RL + PRK + +VRGT+NLPHG  K  R                         LIE+I   G LD +   +T   M ++ +I++IL   GLMPNPK GTVT DVA+AV + K G I F++D
Sbjct:    9 KEAAEKVDKTRLYSPLEAAKLAKETSSKKQDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKTARVAVFAVGDKAEQAEAAGADIVGSDDLIEKI-QGGFLDFDAAIATPDQMAKVGRIARILGPRGLMPNPKTGTVTPDVAKAVSDIKGGKINFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_MYCS2 (50S ribosomal protein L1 OS=Mycobacterium smegmatis GN=rplA PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.602e-20
Identity = 56/144 (38.89%), Postives = 77/144 (53.47%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++A K  K  +    D TVE  +RL + PRK + +VRGT+NLPHG  K  R                         LIE+I   G LD +   +T   M ++ +I+++L   GLMPNPK GTVT DVA+AVQ+ K G I F++D
Sbjct:   24 LEAAKLAKETSSKKQDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKTARVAVFAVGEKAEQAQAAGADIVGSDDLIEKI-QGGFLDFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTPDVAKAVQDIKGGKINFRVD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_CHLPD (50S ribosomal protein L1 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.602e-20
Identity = 53/146 (36.30%), Postives = 82/146 (56.16%), Query Frame = 1
Query:   97 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            DL+DA+++++   +  FD T++  ++L + PR  + +VRGT+ LPHG  K V                         + +E+I  +G   V+   +T   M +L K++KIL   GLMPNPK GTVT DVA+AV+E K G I+F++D
Sbjct:   20 DLVDAVEKIREITQVKFDATIDIAMKLGVDPRHADQVVRGTVMLPHGTGKTVSVLVVCKEAKAEEAVAAGADFVGFEEYVEKI-QNGWTGVDVIIATPDVMGQLGKVAKILGPRGLMPNPKSGTVTMDVAKAVKEVKAGKIEFRVD 164          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_MYCSJ1.992e-2036.5450S ribosomal protein L1 OS=Mycobacterium sp. (str... [more]
RL1_BRASO1.992e-2034.4850S ribosomal protein L1 OS=Bradyrhizobium sp. (st... [more]
RL1_STRVG2.602e-2037.2450S ribosomal protein L1 OS=Streptomyces virginiae... [more]
RL1_STRGR2.602e-2036.1150S ribosomal protein L1 OS=Streptomyces griseus G... [more]
RL1_STRGG2.602e-2036.1150S ribosomal protein L1 OS=Streptomyces griseus s... [more]
RL1_RHILW2.602e-2036.6250S ribosomal protein L1 OS=Rhizobium leguminosaru... [more]
RL1_RHIL32.602e-2036.6250S ribosomal protein L1 OS=Rhizobium leguminosaru... [more]
RL1_MYCVP2.602e-2036.4850S ribosomal protein L1 OS=Mycobacterium vanbaale... [more]
RL1_MYCS22.602e-2038.8950S ribosomal protein L1 OS=Mycobacterium smegmati... [more]
RL1_CHLPD2.602e-2036.3050S ribosomal protein L1 OS=Chlorobium phaeobacter... [more]

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Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
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