CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4782 contig Ccv1_Contig4782:524..1061. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_THEFY (50S ribosomal protein L1 OS=Thermobifida fusca (strain YX) GN=rplA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.398e-20
Identity = 54/143 (37.76%), Postives = 76/143 (53.15%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A++  K  +   FD TVE  +RL + PRK + +VRGT+NLPHG  K  R                         L+E I   G LD +   +T   M ++ ++ +IL   GLMPNPK GTVT DVA+AV + K G I+F++D
Sbjct:   24 EAVRLAKETSTVKFDATVEVAMRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFAAGERAEQARAAGADYVGDDDLVERI-QQGFLDFDAVVATPDMMGKIGRLGRILGPRGLMPNPKTGTVTMDVAKAVSDIKGGKIEFRVD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_HELPY (50S ribosomal protein L1 OS=Helicobacter pylori GN=rplA PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.398e-20
Identity = 55/141 (39.01%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  112 IKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++ VK+ A A FDETVE  +RL + PR  + +VRG + LPHG  K VR                         L EEI  +G++D +   +T   M  + K+ +IL   GLMPNPK GTVT D+A+AV  AK G + F++D
Sbjct:   28 VEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEI-KNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVSNAKSGQVNFRVD 167          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_HELPS (50S ribosomal protein L1 OS=Helicobacter pylori (strain Shi470) GN=rplA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.398e-20
Identity = 55/141 (39.01%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  112 IKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++ VK+ A A FDETVE  +RL + PR  + +VRG + LPHG  K VR                         L EEI  +G++D +   +T   M  + K+ +IL   GLMPNPK GTVT D+A+AV  AK G + F++D
Sbjct:   28 VEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEI-KNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVSNAKSGQVNFRVD 167          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_HELPH (50S ribosomal protein L1 OS=Helicobacter pylori (strain HPAG1) GN=rplA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.398e-20
Identity = 55/141 (39.01%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  112 IKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++ VK+ A A FDETVE  +RL + PR  + +VRG + LPHG  K VR                         L EEI  +G++D +   +T   M  + K+ +IL   GLMPNPK GTVT D+A+AV  AK G + F++D
Sbjct:   28 VEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEI-KNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVSNAKSGQVNFRVD 167          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_HELP2 (50S ribosomal protein L1 OS=Helicobacter pylori (strain P12) GN=rplA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.398e-20
Identity = 55/141 (39.01%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  112 IKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++ VK+ A A FDETVE  +RL + PR  + +VRG + LPHG  K VR                         L EEI  +G++D +   +T   M  + K+ +IL   GLMPNPK GTVT D+A+AV  AK G + F++D
Sbjct:   28 VEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEI-KNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVSNAKSGQVNFRVD 167          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_STRSF (50S ribosomal protein L1 OS=Streptomyces sp. (strain FRI-5) GN=rplA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.438e-20
Identity = 53/145 (36.55%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKL-DVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++A++  K  +   FD TVE   RL + PRK + +VRGT+NLPHG  K  R                        +LI EIA   +L + +   +T   M ++ ++ ++L   GLMPNPK GTVT DVA+AV + K G I+F++D
Sbjct:   23 LEAVRLAKETSTTKFDATVEVAFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDRAAAAEAAGADIVGDDELINEIAKGNRLNEFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTMDVAKAVTDIKGGKIEFRVD 167          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ROSDO (50S ribosomal protein L1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rplA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.438e-20
Identity = 52/143 (36.36%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A+  +KAN+   FDETVE  + L + PR  + +VRG + LP+G  K VR                         L+E +  SGK++ ++C +T   MP + ++ K+L    LMPNPK GTVT DV  AV+ AK G ++FK +
Sbjct:   25 EAVALIKANSSVKFDETVEIAMNLGVDPRHADQMVRGVVGLPNGTGKTVRVAVFARGAKADEATAAGADIVGAEDLMETV-QSGKIEFDRCIATPDMMPIVGRLGKVLGPRNLMPNPKVGTVTMDVEAAVKAAKGGEVQFKAE 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROM4 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.438e-20
Identity = 51/144 (35.42%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++AI  VK ++ A FDET+EAHVRL I P+ T+  +R T+ LP+G  + +R                        +L++ I S G++  +   +T   MP++ K+ ++L   GLMPNPK GTVT D+  A++E K G ++F+ D
Sbjct:   23 LEAINLVKESSTAKFDETIEAHVRLGIDPKYTDQQIRTTVTLPNGTGQTIRIAVIARGEKVAEAKSAGADLAGEEELVDSI-SKGEMGFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKTGTVTADLVGAIKEFKAGKLEFRAD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROAC (50S ribosomal protein L1 OS=Propionibacterium acnes GN=rplA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.438e-20
Identity = 53/143 (37.06%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +A+  V + A A FDETV+  +RL + P+K + +VRGT+NLPHG  K  R                         LI ++   G LD +   +T   M ++ ++ ++L   GLMPNPK GTVT DVA+AV + K G I+F+ D
Sbjct:   24 EALALVASGASAKFDETVDVAIRLGVDPKKADQMVRGTVNLPHGTGKTTRVLVFATGEKAEAAREAGADEVGDDDLIAKV-QGGYLDFDSVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTMDVAKAVSDIKGGKIEFRTD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_HELPG (50S ribosomal protein L1 OS=Helicobacter pylori (strain G27) GN=rplA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.438e-20
Identity = 55/141 (39.01%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  112 IKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++ VK+ A A FDETVE  +RL + PR  + +VRG + LPHG  K VR                         L EEI  +G++D +   +T   M  + K+ +IL   GLMPNPK GTVT D+A+AV  AK G + F++D
Sbjct:   28 VEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEI-KNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFRVD 167          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_THEFY3.398e-2037.7650S ribosomal protein L1 OS=Thermobifida fusca (st... [more]
RL1_HELPY3.398e-2039.0150S ribosomal protein L1 OS=Helicobacter pylori GN... [more]
RL1_HELPS3.398e-2039.0150S ribosomal protein L1 OS=Helicobacter pylori (s... [more]
RL1_HELPH3.398e-2039.0150S ribosomal protein L1 OS=Helicobacter pylori (s... [more]
RL1_HELP23.398e-2039.0150S ribosomal protein L1 OS=Helicobacter pylori (s... [more]
RL1_STRSF4.438e-2036.5550S ribosomal protein L1 OS=Streptomyces sp. (stra... [more]
RL1_ROSDO4.438e-2036.3650S ribosomal protein L1 OS=Roseobacter denitrific... [more]
RL1_PROM44.438e-2035.4250S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROAC4.438e-2037.0650S ribosomal protein L1 OS=Propionibacterium acne... [more]
RL1_HELPG4.438e-2039.0150S ribosomal protein L1 OS=Helicobacter pylori (s... [more]

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Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
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