CX288757
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_THEFY (50S ribosomal protein L1 OS=Thermobifida fusca (strain YX) GN=rplA PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 3.398e-20 Identity = 54/143 (37.76%), Postives = 76/143 (53.15%), Query Frame = 1 Query: 106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +A++ K + FD TVE +RL + PRK + +VRGT+NLPHG K R L+E I G LD + +T M ++ ++ +IL GLMPNPK GTVT DVA+AV + K G I+F++D Sbjct: 24 EAVRLAKETSTVKFDATVEVAMRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFAAGERAEQARAAGADYVGDDDLVERI-QQGFLDFDAVVATPDMMGKIGRLGRILGPRGLMPNPKTGTVTMDVAKAVSDIKGGKIEFRVD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_HELPY (50S ribosomal protein L1 OS=Helicobacter pylori GN=rplA PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 3.398e-20 Identity = 55/141 (39.01%), Postives = 76/141 (53.90%), Query Frame = 1 Query: 112 IKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++ VK+ A A FDETVE +RL + PR + +VRG + LPHG K VR L EEI +G++D + +T M + K+ +IL GLMPNPK GTVT D+A+AV AK G + F++D Sbjct: 28 VEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEI-KNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVSNAKSGQVNFRVD 167
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_HELPS (50S ribosomal protein L1 OS=Helicobacter pylori (strain Shi470) GN=rplA PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 3.398e-20 Identity = 55/141 (39.01%), Postives = 76/141 (53.90%), Query Frame = 1 Query: 112 IKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++ VK+ A A FDETVE +RL + PR + +VRG + LPHG K VR L EEI +G++D + +T M + K+ +IL GLMPNPK GTVT D+A+AV AK G + F++D Sbjct: 28 VEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEI-KNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVSNAKSGQVNFRVD 167
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_HELPH (50S ribosomal protein L1 OS=Helicobacter pylori (strain HPAG1) GN=rplA PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 3.398e-20 Identity = 55/141 (39.01%), Postives = 76/141 (53.90%), Query Frame = 1 Query: 112 IKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++ VK+ A A FDETVE +RL + PR + +VRG + LPHG K VR L EEI +G++D + +T M + K+ +IL GLMPNPK GTVT D+A+AV AK G + F++D Sbjct: 28 VEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEI-KNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVSNAKSGQVNFRVD 167
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_HELP2 (50S ribosomal protein L1 OS=Helicobacter pylori (strain P12) GN=rplA PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 3.398e-20 Identity = 55/141 (39.01%), Postives = 76/141 (53.90%), Query Frame = 1 Query: 112 IKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++ VK+ A A FDETVE +RL + PR + +VRG + LPHG K VR L EEI +G++D + +T M + K+ +IL GLMPNPK GTVT D+A+AV AK G + F++D Sbjct: 28 VEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEI-KNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVSNAKSGQVNFRVD 167
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_STRSF (50S ribosomal protein L1 OS=Streptomyces sp. (strain FRI-5) GN=rplA PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.438e-20 Identity = 53/145 (36.55%), Postives = 78/145 (53.79%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKL-DVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++A++ K + FD TVE RL + PRK + +VRGT+NLPHG K R +LI EIA +L + + +T M ++ ++ ++L GLMPNPK GTVT DVA+AV + K G I+F++D Sbjct: 23 LEAVRLAKETSTTKFDATVEVAFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDRAAAAEAAGADIVGDDELINEIAKGNRLNEFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTMDVAKAVTDIKGGKIEFRVD 167
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ROSDO (50S ribosomal protein L1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rplA PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.438e-20 Identity = 52/143 (36.36%), Postives = 77/143 (53.85%), Query Frame = 1 Query: 106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +A+ +KAN+ FDETVE + L + PR + +VRG + LP+G K VR L+E + SGK++ ++C +T MP + ++ K+L LMPNPK GTVT DV AV+ AK G ++FK + Sbjct: 25 EAVALIKANSSVKFDETVEIAMNLGVDPRHADQMVRGVVGLPNGTGKTVRVAVFARGAKADEATAAGADIVGAEDLMETV-QSGKIEFDRCIATPDMMPIVGRLGKVLGPRNLMPNPKVGTVTMDVEAAVKAAKGGEVQFKAE 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROM4 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplA PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.438e-20 Identity = 51/144 (35.42%), Postives = 81/144 (56.25%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++AI VK ++ A FDET+EAHVRL I P+ T+ +R T+ LP+G + +R +L++ I S G++ + +T MP++ K+ ++L GLMPNPK GTVT D+ A++E K G ++F+ D Sbjct: 23 LEAINLVKESSTAKFDETIEAHVRLGIDPKYTDQQIRTTVTLPNGTGQTIRIAVIARGEKVAEAKSAGADLAGEEELVDSI-SKGEMGFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKTGTVTADLVGAIKEFKAGKLEFRAD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROAC (50S ribosomal protein L1 OS=Propionibacterium acnes GN=rplA PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.438e-20 Identity = 53/143 (37.06%), Postives = 77/143 (53.85%), Query Frame = 1 Query: 106 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +A+ V + A A FDETV+ +RL + P+K + +VRGT+NLPHG K R LI ++ G LD + +T M ++ ++ ++L GLMPNPK GTVT DVA+AV + K G I+F+ D Sbjct: 24 EALALVASGASAKFDETVDVAIRLGVDPKKADQMVRGTVNLPHGTGKTTRVLVFATGEKAEAAREAGADEVGDDDLIAKV-QGGYLDFDSVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTMDVAKAVSDIKGGKIEFRTD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_HELPG (50S ribosomal protein L1 OS=Helicobacter pylori (strain G27) GN=rplA PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.438e-20 Identity = 55/141 (39.01%), Postives = 76/141 (53.90%), Query Frame = 1 Query: 112 IKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++ VK+ A A FDETVE +RL + PR + +VRG + LPHG K VR L EEI +G++D + +T M + K+ +IL GLMPNPK GTVT D+A+AV AK G + F++D Sbjct: 28 VEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEI-KNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFRVD 167 The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bpback to top |