CX288758

Overview
NameCX288758
Unique NameCX288758
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13686 contig Ccv1_Contig13686:412..953. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288758 vs. ExPASy Swiss-Prot
Match: PME59_ARATH (Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.339e-15
Identity = 61/181 (33.70%), Postives = 96/181 (53.04%), Query Frame = 3
Query:   15 SELRASSSNCSSIGQSYPNFNTLEKRAINDCLELFHDTIVELKSALNDLSPKKLPSKHY--HDLQTLFSGAMTNQYTCLDGFAYSDGNVRDVIKSSLYN--ISRHVSNSLVMLKKI--PGDNMSSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVE 539
            +EL  S  NC+         ++ ++  + DC++L+ DTI++L   L+ +SPK   +K     D QT  S A+TN  TC  G   SD NV D I   + N  IS  +SN L +   +   G+  ++           ++GFPTWLS  D++LL+      + +L+VAKDGSG+F T+  A++
Sbjct:   83 AELTNSGKNCT---------DSKKQAVLADCIDLYGDTIMQLNRTLHGVSPKAGAAKSCTDFDAQTWLSTALTNTETCRRG--SSDLNVTDFITPIVSNTKISHLISNCLAVNGALLTAGNKGNTTAN--------QKGFPTWLSRKDKRLLR----AVRANLVVAKDGSGHFNTVQAAID 240          
BLAST of CX288758 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.714e-15
Identity = 54/158 (34.18%), Postives = 87/158 (55.06%), Query Frame = 3
Query:   87 KRAINDCLELFHDTIVELK---SALNDLSPKKLPSKHYHDLQTLFSGAMTNQYTCLDGFAYSDGNVR----DVIKSSLYNISRHVSNSLVMLKKIPGDNMSSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVE 539
            ++AI+ C  +F D +  L    SAL  ++ +   S    +++T  S A+T+Q TCLD     +          I++++ N +   SNSL ++ KI G  + S++E  P + R   GFP WL   +R+LL++  N +  D +VAKDGSG F TI EA++
Sbjct:  138 QKAIDVCSSVFGDALDRLNDSISALGTVAGRIASSASVSNVETWLSAALTDQDTCLDAVGELNSTAARGALQEIETAMRNSTEFASNSLAIVTKILG--LLSRFET-PIHHRRLLGFPEWLGAAERRLLEEKNNDSTPDAVVAKDGSGQFKTIGEALK 292          
BLAST of CX288758 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.826e-14
Identity = 55/174 (31.61%), Postives = 88/174 (50.57%), Query Frame = 3
Query:   45 SSIGQSYPNFNTLEKRAINDCLELFHDTIVELKSALNDLSPKKLPSKHYHDLQTLFSGAMTNQYTCLDGF-AYSDGNVRDVIKSSLYNISRHVSNSLVMLKKI-PGDNMSSKYEVFPEYGRIKRG-------FPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVE 539
            SS   S+ +     + A + C+EL  D++  L  AL+ +      S    D+ T  S A+TN  TC +GF    DG V+D + ++L N+S  VSN L +      GD+ +      P   R   G       FP W+   +R++L+  V+  + D+IV+KDG+G   TI+EA++
Sbjct:  137 SSASLSFVDMPPRARSAYDSCVELLDDSVDALSRALSSVVSS---SAKPQDVTTWLSAALTNHDTCTEGFDGVDDGGVKDHMTAALQNLSELVSNCLAIFSASHDGDDFAG----VPIQNRRLLGVEEREEKFPRWMRPKEREILEMPVSQIQADIIVSKDGNGTCKTISEAIK 303          
BLAST of CX288758 vs. ExPASy Swiss-Prot
Match: PME60_ARATH (Probable pectinesterase/pectinesterase inhibitor 60 OS=Arabidopsis thaliana GN=PME60 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.223e-14
Identity = 59/178 (33.15%), Postives = 89/178 (50.00%), Query Frame = 3
Query:   18 ELRASSSNCSSIGQSYPNFNTLEKRAINDCLELFHDTIVELKSALNDLSPKKLPSKHYHDLQTLFSGAMTNQYTCLDGFAYSDGNVRDVIKSSLYN--ISRHVSNSLVMLKKI--PGDNMSSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVE 539
            +L  SS NC+   +         +  + DC+ L+ DT+++L   L  +S K        D QT  S A+TN  TC  G   SD NV D     + N  IS  +SN L +   +   G N S+  +         +GFPTW+S  +R+LLQ  +   + +L+VAKDGSG+F T+  A++
Sbjct:   88 KLTNSSKNCTDFKK---------QAVLADCINLYGDTVMQLNRTLQGVSSKTGRRCTDFDAQTWLSTALTNTETCRRGS--SDLNVSDFTTPIVSNTKISHLISNCLAVNGALLTAGKNDSTTGD--------SKGFPTWVSRKERRLLQ--LQSVRANLVVAKDGSGHFKTVQAAID 244          
BLAST of CX288758 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.074e-13
Identity = 57/186 (30.65%), Postives = 89/186 (47.85%), Query Frame = 3
Query:    3 NRTLSELRASSSNCSSIGQSYPNFNTLEKRAINDCLELFHDTIVELKSALNDLSPKKLPSKHYHDLQTLFSGAMTNQYTCLDGFAYSDGN---VRDVIKSSLYNISRHVSNSLVM----LKKIPGDNMSSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVE 539
            N TL +   +    S+I  +Y       + A + CLEL  D++  L  AL+ +        H  D+ T  S AMTN  TC DGF   +G    V+D +  ++ ++S  VSN L +    +K + G  + +  ++           P WL   DR+LL    +  + D+ V+KDGSG F TI EA++
Sbjct:  112 NATLQKFSKALYTSSTI--TYTQMPPRVRSAYDSCLELLDDSVDALTRALSSVVVVSGDESH-SDVMTWLSSAMTNHDTCTDGFDEIEGQGGEVKDQVIGAVKDLSEMVSNCLAIFAGKVKDLSGVPVVNNRKLLGT--EETEELPNWLKREDRELLGTPTSAIQADITVSKDGSGTFKTIAEAIK 292          
BLAST of CX288758 vs. ExPASy Swiss-Prot
Match: PME1_FICAW (Pectinesterase/pectinesterase inhibitor OS=Ficus awkeotsang PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.074e-13
Identity = 49/157 (31.21%), Postives = 80/157 (50.96%), Query Frame = 3
Query:   75 NTLEKRAINDCLELFHDTIVELKSALNDLSPKKLPSKHYHDLQTLFSGAMTNQYTCLDGFAY-SDGNVRDVIKSSLYNISRHVSNSLVMLKKIPGDNMSSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEA 542
            N  E+ A+ DC EL   +   +  +++ L  + L ++ + DL    SG +TN  TCLDG    S   ++ +++S L  +      SL +   +      +K  V      +   FPTW++  DR+LLQ      + D++VAKDGSG++ T+ EAV A
Sbjct:  103 NPQERTALLDCAELMDLSKERVVDSISILFHQNLTTRSHEDLHVWLSGVLTNHVTCLDGLEEGSTDYIKTLMESHLNELILRARTSLAIFVTL----FPAKSNVIEP---VTGNFPTWVTAGDRRLLQTLGKDIEPDIVVAKDGSGDYETLNEAVAA 252          
BLAST of CX288758 vs. ExPASy Swiss-Prot
Match: PME17_ARATH (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.832e-13
Identity = 56/156 (35.90%), Postives = 83/156 (53.21%), Query Frame = 3
Query:   75 NTLEKRAINDCLELFHDTIVELKSALNDLSPKKLPSKHYHDLQTLFSGAMTNQYTCLDGFAYSDGNVRDVIKSSLYNISRHVSNSLVMLKKIPGDNMSSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEA 542
            +T EK A  DC++L+  T+ ++   ++   P    SK   D QT  S A+TN  TC  GF   +  V D++   + N   ++  + + + K+P +         PE    K GFP+W+   DRKLLQ S    K + +VAKDGSGNF TI EA++A
Sbjct:   90 DTREKAAWEDCIKLYDLTVSKINETMD---PNVKCSKL--DAQTWLSTALTNLDTCRAGFL--ELGVTDIVLPLMSNNVSNLLCNTLAINKVPFNYTP------PE----KDGFPSWVKPGDRKLLQSST--PKDNAVVAKDGSGNFKTIKEAIDA 226          
BLAST of CX288758 vs. ExPASy Swiss-Prot
Match: PME12_ARATH (Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.092e-13
Identity = 47/156 (30.13%), Postives = 81/156 (51.92%), Query Frame = 3
Query:   84 EKRAINDCLELFHDTIVELKSALNDLSPKKLPSKHYHDLQTLFSGAMTNQYTCLDGFAYSDGNVRDVIKSSLYNISRHVSNSLVMLKKIPGDNMSSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVN-LTKFD----LIVAKDGSGNFTTITEAV 536
            ++ ++ DC +L H T   LK +++ +      S+   D +   S A+TN+ TCL+G   + G ++  + +S     +H+SNSL  L K      + K     +  R+   FP W+   D + L+ S +   ++D    L+VA DG+GNF+TI EA+
Sbjct:  101 QRGSLQDCKDLHHITSSFLKRSISKIQDGVNDSRKLADARAYLSAALTNKITCLEGLESASGPLKPKLVTSFTTTYKHISNSLSALPK-QRRTTNPKTGGNTKNRRLLGLFPDWVYKKDHRFLEDSSDGYDEYDPSESLVVAADGTGNFSTINEAI 255          
BLAST of CX288758 vs. ExPASy Swiss-Prot
Match: PME_PRUPE (Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.025e-12
Identity = 57/182 (31.32%), Postives = 87/182 (47.80%), Query Frame = 3
Query:    9 TLSELRASSSNCSSIGQSYPNFNTLEKRAINDCLELFHDTIVELKSAL----NDLSPKKLPSKHYHDLQTLFSGAMTNQYTCLDGFAYSDGNVRDVIKSSLYNISRHVSNSLVMLKKIPGDNMSSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEA 542
            T+  ++  +S  S    ++ +F      AI+DCL+L   +  EL  +L    N         K   DL+T  S A+ NQ TC +GF  ++  V+ +I + L  ++  V   L  +   P  N           G+I    P+W+   DRKLLQ   +    D IVA+DG+GNFT +T+AV A
Sbjct:   63 TIDAVQQVASILSQFANAFGDFRLAN--AISDCLDLLDFSADELNWSLSASQNQKGKNNSTGKLSSDLRTWLSAALVNQDTCSNGFEGTNSIVQGLISAGLGQVTSLVQELLTQVH--PNSNQQG------PNGQI----PSWVKTKDRKLLQ--ADGVSVDAIVAQDGTGNFTNVTDAVLA 228          
BLAST of CX288758 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.025e-12
Identity = 58/157 (36.94%), Postives = 79/157 (50.32%), Query Frame = 3
Query:   75 NTLEKRAINDCLELFHDTIVELKSALNDLSPKKLPSKHYHDLQTLFSGAMTNQYTCLDGFAYSDGNVRDVIKSSLYN-ISRHVSNSLVMLKKIPGDNMSSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEA 542
            N  EK A  DC EL+  T+++L    N       P     D QT  S A+TN  TC       D  V + +   L N +++ +SN+L  L K+P +         P Y   K GFPTW+   DRKLLQ +    + +++VA+DGSGN  TI EAV A
Sbjct:   88 NEREKAAWEDCRELYELTVLKLNQTSNSS-----PGCTKVDKQTWLSTALTNLETCRASL--EDLGVPEYVLPLLSNNVTKLISNTL-SLNKVPYNE--------PSY---KDGFPTWVKPGDRKLLQTT---PRANIVVAQDGSGNVKTIQEAVAA 222          
The following BLAST results are available for this feature:
BLAST of CX288758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PME59_ARATH3.339e-1533.70Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME3_PHAVU9.714e-1534.18Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME34_ARATH2.826e-1431.61Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME60_ARATH8.223e-1433.15Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME61_ARATH1.074e-1330.65Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME1_FICAW1.074e-1331.21Pectinesterase/pectinesterase inhibitor OS=Ficus a... [more]
PME17_ARATH1.832e-1335.90Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME12_ARATH9.092e-1330.13Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME_PRUPE2.025e-1231.32Pectinesterase/pectinesterase inhibitor PPE8B OS=P... [more]
PME2_CITSI2.025e-1236.94Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]

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Properties
Property NameValue
Genbank descriptionC02004B01SK IF1 Citrus clementina cDNA clone C02004B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288758 ID=CX288758; Name=CX288758; organism=Citrus clementina; type=EST; length=542bp
TAAACCGCACATTGTCCGAGCTGAGAGCCTCCTCCTCAAACTGCTCCAGC
ATTGGACAGAGTTACCCAAATTTTAACACCCTTGAAAAGAGAGCAATCAA
TGACTGTCTCGAGCTGTTTCATGACACCATTGTTGAGCTCAAATCAGCTC
TCAATGATCTCTCCCCCAAGAAATTGCCCTCCAAGCATTACCATGATTTG
CAAACTTTGTTCAGCGGTGCAATGACAAACCAGTACACGTGTCTTGATGG
GTTCGCTTACAGTGACGGAAACGTGAGGGACGTTATTAAGAGCAGCTTGT
ACAACATTTCCAGGCACGTGAGCAACTCTTTGGTTATGCTCAAGAAAATC
CCCGGTGATAACATGTCTTCCAAGTACGAGGTTTTTCCTGAGTATGGGCG
TATTAAGAGAGGATTCCCAACTTGGTTGTCTTTAAATGATCGCAAATTGT
TACAGAAGTCCGTTAATTTGACCAAATTTGATCTGATAGTGGCTAAAGAT
GGCTCTGGGAATTTCACTACCATTACTGAAGCAGTGGAAGCA
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