CX288759

Overview
NameCX288759
Unique NameCX288759
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length492
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGAL8_ARATH (Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BGAL8 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.948e-34
Identity = 75/164 (45.73%), Postives = 104/164 (63.41%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISL-VKRSVTSVCAEVAEYH-PTIKNWHIESYGKPEEFHSPKVHLRCS-PGHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDILXKKCVGKQRCAVTISNSNFGVDPCPNVLKRLSVEAICS 484
            KC   CG+P+Q  YHVPRSWLKP+ N LV+FEE+GG+P++IS   K++ +++C  V++ H P +  W  +S         P + L+C      I SI FASFGTP GTCGS+ QG C+S  S  ++ K C+G + C V +S   FG +PC  V+K L+VEA CS
Sbjct:  690 KCLKNCGKPSQTLYHVPRSWLKPSGNILVLFEEMGGDPTQISFATKQTGSNLCLTVSQSHPPPVDTWTSDSKISNRNRTRPVLSLKCPISTQVIFSIKFASFGTPKGTCGSFTQGHCNSSRSLSLVQKACIGLRSCNVEVSTRVFG-EPCRGVVKSLAVEASCS 852          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGA16_ARATH (Beta-galactosidase 16 OS=Arabidopsis thaliana GN=BGAL16 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.396e-32
Identity = 75/161 (46.58%), Postives = 93/161 (57.76%), Query Frame = 2
Query:   20 GQPTQRWYHVPRSWLKPTQNFLVVFEE-LGGNPSRISLVKRSVTSVCAEVAEY--HPTIKNWHIESYGKPEEFH---SPKVHLRCSPGHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDILXKKCVGKQRCAVTISNSNFGVDPCPNVLKRLSVEAICS 484
            G P+Q WYH+PRS+LKP  N LV+ EE   GNP  I++   SVT VC  V+    HP I         K   +     PKV L+C  G  IS I FASFGTP G+CGSY  G CHSP S  ++ K C+ K RC+V + +  FG D CP+ +K L V A CS
Sbjct:  655 GNPSQIWYHIPRSFLKPNSNLLVILEEEREGNPLGITIDTVSVTEVCGHVSNTNPHPVISPRKKGLNRKNLTYRYDRKPKVQLQCPTGRKISKILFASFGTPNGSCGSYSIGSCHSPNSLAVVQKACLKKSRCSVPVWSKTFGGDSCPHTVKSLLVRAQCS 815          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGAL7_ORYSJ (Beta-galactosidase 7 OS=Oryza sativa subsp. japonica GN=Os05g0428100 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.307e-30
Identity = 64/154 (41.56%), Postives = 96/154 (62.34%), Query Frame = 2
Query:   20 GQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKRSVTSVCAEVAEYHPTIKNWHIESYGKPEEFHSPKVHLRCSPGHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDILXKKCVGKQRCAVTISNSNFGVDPCPNVLKRLSVEAIC 481
            GQP+Q  YH+PR +L P  N LV+ EE+GG+P +I++   SVT+VC  V E+        ++S GK      PKV + C  G+ ISSI FAS+G P+G C S++ G CH+ +S  ++ + C+G++ C++ +  + FG DPCP + K L V A C
Sbjct:  630 GQPSQSLYHIPRGFLTPKDNLLVLVEEMGGDPLQITVNTMSVTTVCGNVDEFSVP----PLQSRGKV-----PKVRIWCQGGNRISSIEFASYGNPVGDCRSFRIGSCHAESSESVVKQSCIGRRGCSIPVMAAKFGGDPCPGIQKSLLVVADC 774          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGA13_ARATH (Beta-galactosidase 13 OS=Arabidopsis thaliana GN=BGAL13 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.350e-26
Identity = 63/162 (38.89%), Postives = 96/162 (59.26%), Query Frame = 2
Query:   20 GQPTQRWYHVPRSWLKPTQNFLVVFEELGG-NPSRISLVKRSVTSVCAEVAE-YHPTIKNW---HIESYGKPEEFHSPKVHLRCSPGHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDILXKKCVGKQRCAVTISNSNF---GVDPCPNVLKRLSVEAIC 481
            GQPTQ  YH+PRS+LKP +N LV+FEE     P  I  V  +  +VC+ + E Y P++++W   + +     ++ H    +L+CS    IS++ FASFG P GTCG++  G C++P S  ++ K C+GK  C + ++ S F     D CP V K+L+V+  C
Sbjct:  682 GQPTQIEYHIPRSFLKPKKNLLVIFEEEPNVKPELIDFVIVNRDTVCSYIGENYTPSVRHWTRKNDQVQAITDDVHLT-ANLKCSGTKKISAVEFASFGNPNGTCGNFTLGSCNAPVSKKVVEKYCLGKAECVIPVNKSTFEQDKKDSCPKVEKKLAVQVKC 842          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGA11_ORYSJ (Beta-galactosidase 11 OS=Oryza sativa subsp. japonica GN=Os08g0549200 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.653e-25
Identity = 59/166 (35.54%), Postives = 89/166 (53.61%), Query Frame = 2
Query:   20 GQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKRSVTSVCAEVAEYHPTIKNWHIESYGKPEEFHS----------PKVHLRCSPGHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDILXKKCVGKQRCAVTISNSNFGVD-PCPNVLKRLSVEAICS 484
            G+P+Q  YHVPRS L+P  N L+ FEE GG P  I ++     ++C  + E +P    W  ES     +  +          P   L C     I S+ FAS+G PLG CG+Y  G CH+P + +++ K C+G++ C++ +S+  +G D  CP     L+V+A CS
Sbjct:  672 GKPSQYLYHVPRSLLRPKGNTLMFFEEEGGKPDAIMILTVKRDNICTFMTEKNPAHVRWSWESKDSQPKAVAGAGAGAGGLKPTAVLSCPTKKTIQSVVFASYGNPLGICGNYTVGSCHAPRTKEVVEKACIGRKTCSLVVSSEVYGGDVHCPGTTGTLAVQAKCS 837          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGAL7_ARATH (Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BGAL7 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.071e-24
Identity = 65/163 (39.88%), Postives = 87/163 (53.37%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPT-QNFLVVFEELGGNPSRISLVKRSVTSVCAEVAEYHPTIKNWHIESYGKPEEFHSPKVHLRCSPGHAISSIXFASFGTPLGTCGSYQQGPCH-SPTSYDILXKKCVGKQRCAVTISNSNFGVD-PCPNVLKRLSVEAIC 481
            KC   CG+PTQRWYHVPRS+L  +  N + +FEE+GGNPS ++     V +VCA   E++                    KV L C     IS++ FASFG PLG CGS+  G C     +   + K+CVGK  C V +S+  FG    C +  K+L+VE  C
Sbjct:  685 KCAFMCGKPTQRWYHVPRSFLNASGHNTITLFEEMGGNPSMVNFKTVVVGTVCARAHEHN--------------------KVELSCH-NRPISAVKFASFGNPLGHCGSFAVGTCQGDKDAAKTVAKECVGKLNCTVNVSSDTFGSTLDCGDSPKKLAVELEC 826          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGA11_ARATH (Beta-galactosidase 11 OS=Arabidopsis thaliana GN=BGAL11 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.071e-24
Identity = 60/161 (37.27%), Postives = 92/161 (57.14%), Query Frame = 2
Query:   20 GQPTQRWYHVPRSWLKPTQNFLVVFEELGG-NPSRISLVKRSVTSVCAEVAE-YHPTIKNW--HIESYGKPEEFHSPKVHLRCSPGHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDILXKKCVGKQRCAVTISNSNF---GVDPCPNVLKRLSVEAIC 481
            GQPTQ  YH+PRS+LKP +N LV+FEE     P  +     +  +VC+ V E Y P++++W    +      +  S    L+CS    I+++ FASFG P+G CG++  G C++P S  ++ K C+GK  C + ++ S F     D C NV+K L+V+  C
Sbjct:  679 GQPTQIEYHIPRSFLKPKKNLLVIFEEEPNVKPELMDFAIVNRDTVCSYVGENYTPSVRHWTRKKDQVQAITDNVSLTATLKCSGTKKIAAVEFASFGNPIGVCGNFTLGTCNAPVSKQVIEKHCLGKAECVIPVNKSTFQQDKKDSCKNVVKMLAVQVKC 839          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGA12_ORYSJ (Beta-galactosidase 12 OS=Oryza sativa subsp. japonica GN=Os09g0539200 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 2.387e-24
Identity = 59/159 (37.11%), Postives = 88/159 (55.35%), Query Frame = 2
Query:   20 GQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKRSVTSVCAEVAEYHPT-IKNWHIESYGKP----EEFHSPKVHLRCSPGHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDILXKKCVGKQRCAVTISNSNFGVD-PCPNVLKRLSVEAI 478
            G P+Q  YH+PR++LKP  N L++FEE  G P  I +       +C  ++E++P  IK W  ES G       E  S +  L C P   I  + FASFG P G CG++  G CH+P +  I+ K+C+GK+ C + + N+ +G D  CP     L+V+ +
Sbjct:  673 GHPSQSVYHIPRAFLKPKGNLLIIFEEELGKPGGILIQTVRRDDICVFISEHNPAQIKTW--ESDGGQIKLIAEDTSTRGTLNCPPKRTIQEVVFASFGNPEGACGNFTAGTCHTPDAKAIVEKECLGKESCVLPVVNTVYGADINCPATTATLAVQLL 829          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGAL_BRAOL (Beta-galactosidase OS=Brassica oleracea PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.547e-23
Identity = 62/163 (38.04%), Postives = 86/163 (52.76%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPT-QNFLVVFEELGGNPSRISLVKRSVTSVCAEVAEYHPTIKNWHIESYGKPEEFHSPKVHLRCSPGHAISSIXFASFGTPLGTCGSYQQGPCH-SPTSYDILXKKCVGKQRCAVTISNSNFGVD-PCPNVLKRLSVEAIC 481
            KC   CG+PTQRWYHVPRS+L     N + +FEE+GG+PS +         VCA+  E++                    KV L C+    IS++ FASFG P G CGS+  G C  +  +  ++ K+CVGK  C + +S+  FG +  C +  KRL VE  C
Sbjct:  687 KCAFMCGKPTQRWYHVPRSFLNDKGHNTITLFEEMGGDPSMVKFKTVVTGRVCAKAHEHN--------------------KVELSCN-NRPISAVKFASFGNPSGQCGSFAAGSCEGAKDAVKVVAKECVGKLNCTMNVSSHKFGSNLDCGDSPKRLFVEVEC 828          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGA15_ARATH (Beta-galactosidase 15 OS=Arabidopsis thaliana GN=BGAL15 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.639e-23
Identity = 65/149 (43.62%), Postives = 86/149 (57.72%), Query Frame = 2
Query:   41 YHVPRSWLKPT-QNFLVVFEELGGNPSRISLVKRSVTSVCAEVAEYHPTIKNWHIESYGKPEEFHSPKVHLRCSPGHAISSIXFASFGTPLGTCGSYQQGPCH-SPTSYDILXKKCVGKQRCAVTISNSNFGVDPCPNVLKRLSVEAIC 481
            YHVPRS+L     N LV+FEE+GGNPS ++     V SVCA V E     KN                + L C+ G  IS+I FASFG P G CGS+++G C  S  +  IL ++CVGK++C++ +S   FG   C  + KRL+VEAIC
Sbjct:  652 YHVPRSFLNSEGDNTLVLFEEIGGNPSLVNFQTIGVGSVCANVYE-----KN---------------VLELSCN-GKPISAIKFASFGNPGGDCGSFEKGTCEASNNAAAILTQECVGKEKCSIDVSEDKFGAAECGALAKRLAVEAIC 779          
The following BLAST results are available for this feature:
BLAST of CX288759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
BGAL8_ARATH1.948e-3445.73Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BG... [more]
BGA16_ARATH1.396e-3246.58Beta-galactosidase 16 OS=Arabidopsis thaliana GN=B... [more]
BGAL7_ORYSJ1.307e-3041.56Beta-galactosidase 7 OS=Oryza sativa subsp. japoni... [more]
BGA13_ARATH4.350e-2638.89Beta-galactosidase 13 OS=Arabidopsis thaliana GN=B... [more]
BGA11_ORYSJ1.653e-2535.54Beta-galactosidase 11 OS=Oryza sativa subsp. japon... [more]
BGAL7_ARATH1.071e-2439.88Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BG... [more]
BGA11_ARATH1.071e-2437.27Beta-galactosidase 11 OS=Arabidopsis thaliana GN=B... [more]
BGA12_ORYSJ2.387e-2437.11Beta-galactosidase 12 OS=Oryza sativa subsp. japon... [more]
BGAL_BRAOL1.547e-2338.04Beta-galactosidase OS=Brassica oleracea PE=2 SV=1[more]
BGA15_ARATH2.639e-2343.62Beta-galactosidase 15 OS=Arabidopsis thaliana GN=B... [more]

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Properties
Property NameValue
Genbank descriptionC02004B02SK IF1 Citrus clementina cDNA clone C02004B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288759 ID=CX288759; Name=CX288759; organism=Citrus clementina; type=EST; length=492bp
AAAATGTCAACTAGGTTGCGGGCAACCAACCCAAAGATGGTACCATGTGC
CTCGCTCTTGGTTGAAGCCAACACAGAATTTTTTAGTCGTTTTTGAAGAA
CTAGGAGGTAATCCATCAAGAATTTCTCTTGTCAAGAGATCAGTAACCAG
TGTTTGCGCTGAGGTTGCTGAGTACCATCCAACTATCAAGAACTGGCACA
TAGAAAGCTATGGAAAACCAGAAGAGTTCCACAGCCCCAAGGTTCACTTG
CGATGTAGTCCAGGACATGCCATTTCATCCATCANATTTGCAAGCTTTGG
AACTCCTTTGGGAACTTGTGGTAGTTACCAGCAAGGACCTTGCCATTCTC
CCACTTCTTATGACATCTTANAGAAGAAGTGTGTCGGGAAGCAAAGATGT
GCAGTCACCATATCAAACAGTAACTTTGGCGTAGACCCATGTCCAAATGT
GTTGAAGCGATTATCAGTTGAAGCTATATGTTCTCCTACGAC
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