CX288759

Overview
NameCX288759
Unique NameCX288759
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length492
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGA14_ARATH (Beta-galactosidase 14 OS=Arabidopsis thaliana GN=BGAL14 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.710e-22
Identity = 54/161 (33.54%), Postives = 91/161 (56.52%), Query Frame = 2
Query:   20 GQPTQRWYHVPRSWLK--PTQNFLVVFEELGG-NPSRISLVKRSVTSVCAEVAEYHP-TIKNWHIES---YGKPEEFHSPKVHLRCSPGHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDILXKKCVGKQRCAVTISNSNFGVDPCPNVLKRLSVEAIC 481
            G+PTQ  YH+PRS++K    +N LV+ EE  G     I  V  +  ++C+ V E +P ++K+W  E      + ++     V +RC P   +  + FASFG P GTCG++  G C +  S +++ K+C+G+  C++ ++   FG   CP ++K L+V+  C
Sbjct:  678 GEPTQTEYHIPRSFMKGEKKKNMLVILEEEPGVKLESIDFVLVNRDTICSNVGEDYPVSVKSWKREGPKIVSRSKDMRLKAV-MRCPPEKQMVEVQFASFGDPTGTCGNFTMGKCSASKSKEVVEKECLGRNYCSIVVARETFGDKGCPEIVKTLAVQVKC 837          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGAL1_ORYSJ (Beta-galactosidase 1 OS=Oryza sativa subsp. japonica GN=Os01g0533400 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.601e-20
Identity = 60/161 (37.27%), Postives = 84/161 (52.17%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPTQ-NFLVVFEELGGNPSRISLVKRSVTSVCAEVAEYHPTIKNWHIESYGKPEEFHSPKVHLRCSPGHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDILXKKCVGKQRCAVTISNSNFGVDPCPNVLKRLSVEAIC 481
            +C  GCG+P+QR+YHVPRS+L   + N L++FEE GG+PS ++L      +VC                  G+  +     V L C  GHA+SS+  ASFG   G CG Y +G C S  +Y+     CVGK+ C V I+ +  G      V   L+V+A C
Sbjct:  691 RCLTGCGEPSQRYYHVPRSFLAAGEPNTLLLFEEAGGDPSGVALRTVVPGAVCTS----------------GEAGD----AVTLSCGGGHAVSSVDVASFGVGRGRCGGY-EGGCESKAAYEAFTAACVGKESCTVEITGAFAGAGCLSGV---LTVQATC 827          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGA10_ORYSJ (Putative beta-galactosidase 10 OS=Oryza sativa subsp. japonica GN=Os06g0628500 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.658e-20
Identity = 63/162 (38.89%), Postives = 85/162 (52.47%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPTQ-NFLVVFEELGGNPSRISLVKRSVTSVCAEVAEYHPTIKNWHIESYGKPEEFHSPKVHLRCSP-GHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDILXKKCVGKQRCAVTISNSNFGVDPCPNVLKRLSVEAIC 481
            KC  GCG+P+QR+YHVPRS+LK  + N +++FEE GG+PS +S    +  SVCA  AE   TI                    L C      IS+I   SFG   G CG+Y +G C S  +Y    + C+GK+ C V I+N+  G     NV   L+V+A C
Sbjct:  672 KCLTGCGEPSQRFYHVPRSFLKNGEPNTVILFEEAGGDPSHVSFRTVAAGSVCAS-AEVGDTIT-------------------LSCGQHSKTISAINVTSFGVARGQCGAY-KGGCESKAAYKAFTEACLGKESCTVQITNAVTGSGCLSNV---LTVQASC 809          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGA14_ORYSJ (Beta-galactosidase 14 OS=Oryza sativa subsp. japonica GN=Os10g0340600 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.770e-19
Identity = 65/162 (40.12%), Postives = 85/162 (52.47%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWL-KPTQNFLVVFEELGGNPSRISLVKRSVTSVCAEVAEYHPTIKNWHIESYGKPEEFHSPKVHLRC-SPGHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDILXKKCVGKQRCAVTISNSNFGVDPCPNVLKRLSVEAIC 481
            KC  GCG+P+Q+ YHVPRS+L K   N L++FEE GG+PS +++      SVCA  AE   T                   V L C + G  ISS+  ASFG   G CGSY  G C S  +YD     CVGK+ C V ++++ F    C  V   L+V+A C
Sbjct:  671 KCLTGCGEPSQQLYHVPRSFLNKGEPNTLILFEEAGGDPSEVAVRTVVEGSVCAS-AEVGDT-------------------VTLSCGAHGRTISSVDVASFGVARGRCGSY-DGGCESKVAYDAFAAACVGKESCTVLVTDA-FANAGC--VSGVLTVQATC 808          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGA13_ORYSJ (Beta-galactosidase 13 OS=Oryza sativa subsp. japonica GN=Os10g0330600 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.360e-18
Identity = 60/164 (36.59%), Postives = 82/164 (50.00%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPTQ-NFLVVFEELGGNPSRISLVKRSVTSVC--AEVAEYHPTIKNWHIESYGKPEEFHSPKVHLRCSP-GHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDILXKKCVGKQRCAVTISNSNFGVDPCPNVLKRLSVEAIC 481
            KC  GCG+P+QR+YHVPRS+LK  + N L++FEE GG+PS++        SVC  AEV +                       + L C      IS+I   SFG   G CG+Y +G C S  +Y    + C+GK+ C V I N+  G      V   L+V+A C
Sbjct:  691 KCLTGCGEPSQRYYHVPRSFLKNGEPNTLILFEEAGGDPSQVIFHSVVAGSVCVSAEVGD----------------------AITLSCGQHSKTISTIDVTSFGVARGQCGAY-EGGCESKAAYKAFTEACLGKESCTVQIINALTGSGCLSGV---LTVQASC 828          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGAL5_ARATH (Beta-galactosidase 5 OS=Arabidopsis thaliana GN=BGAL5 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.295e-17
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKRSV 145
            KCQ GCG+PTQRWYHVPRSWLKP  N LV+FEELGG+ S++S+VKRSV
Sbjct:  684 KCQSGCGEPTQRWYHVPRSWLKPKGNLLVLFEELGGDISKVSVVKRSV 731          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGAL_MALDO (Beta-galactosidase OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.645e-15
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKR 139
            KC+  CG+P+QRWYH+PRSWL PT N LVVFEE GG+PSRISLV+R
Sbjct:  677 KCRTHCGEPSQRWYHIPRSWLTPTGNLLVVFEEWGGDPSRISLVER 722          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGAL2_ARATH (Beta-galactosidase 2 OS=Arabidopsis thaliana GN=BGAL2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.714e-14
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKRS 142
            KC   CG+P+QRWYHVPRSWLKP  N LV+FEE GG+PS ISLVKR+
Sbjct:  679 KCLSHCGEPSQRWYHVPRSWLKPFGNLLVIFEEWGGDPSGISLVKRT 725          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGA10_ARATH (Beta-galactosidase 10 OS=Arabidopsis thaliana GN=BGAL10 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.819e-14
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKRSVTSV 154
            KC  GCG+P+QRWYHVPRSW K + N LV+FEE GGNP +I L KR V+ V
Sbjct:  691 KCLTGCGEPSQRWYHVPRSWFKSSGNELVIFEEKGGNPMKIKLSKRKVSVV 741          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGA12_ARATH (Beta-galactosidase 12 OS=Arabidopsis thaliana GN=BGAL12 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.476e-13
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKRS 142
            KC   CG+ +QRWYHVPRSWLKPT N ++V EE GG P+ ISLVKR+
Sbjct:  680 KCLSNCGEASQRWYHVPRSWLKPTNNLVIVLEEWGGEPNGISLVKRT 726          
The following BLAST results are available for this feature:
BLAST of CX288759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
BGA14_ARATH1.710e-2233.54Beta-galactosidase 14 OS=Arabidopsis thaliana GN=B... [more]
BGAL1_ORYSJ1.601e-2037.27Beta-galactosidase 1 OS=Oryza sativa subsp. japoni... [more]
BGA10_ORYSJ4.658e-2038.89Putative beta-galactosidase 10 OS=Oryza sativa sub... [more]
BGA14_ORYSJ1.770e-1940.12Beta-galactosidase 14 OS=Oryza sativa subsp. japon... [more]
BGA13_ORYSJ4.360e-1836.59Beta-galactosidase 13 OS=Oryza sativa subsp. japon... [more]
BGAL5_ARATH6.295e-1777.08Beta-galactosidase 5 OS=Arabidopsis thaliana GN=BG... [more]
BGAL_MALDO2.645e-1573.91Beta-galactosidase OS=Malus domestica PE=1 SV=1[more]
BGAL2_ARATH1.714e-1472.34Beta-galactosidase 2 OS=Arabidopsis thaliana GN=BG... [more]
BGA10_ARATH3.819e-1464.71Beta-galactosidase 10 OS=Arabidopsis thaliana GN=B... [more]
BGA12_ARATH2.476e-1365.96Beta-galactosidase 12 OS=Arabidopsis thaliana GN=B... [more]

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Properties
Property NameValue
Genbank descriptionC02004B02SK IF1 Citrus clementina cDNA clone C02004B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288759 ID=CX288759; Name=CX288759; organism=Citrus clementina; type=EST; length=492bp
AAAATGTCAACTAGGTTGCGGGCAACCAACCCAAAGATGGTACCATGTGC
CTCGCTCTTGGTTGAAGCCAACACAGAATTTTTTAGTCGTTTTTGAAGAA
CTAGGAGGTAATCCATCAAGAATTTCTCTTGTCAAGAGATCAGTAACCAG
TGTTTGCGCTGAGGTTGCTGAGTACCATCCAACTATCAAGAACTGGCACA
TAGAAAGCTATGGAAAACCAGAAGAGTTCCACAGCCCCAAGGTTCACTTG
CGATGTAGTCCAGGACATGCCATTTCATCCATCANATTTGCAAGCTTTGG
AACTCCTTTGGGAACTTGTGGTAGTTACCAGCAAGGACCTTGCCATTCTC
CCACTTCTTATGACATCTTANAGAAGAAGTGTGTCGGGAAGCAAAGATGT
GCAGTCACCATATCAAACAGTAACTTTGGCGTAGACCCATGTCCAAATGT
GTTGAAGCGATTATCAGTTGAAGCTATATGTTCTCCTACGAC
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