CX288759

Overview
NameCX288759
Unique NameCX288759
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length492
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGAL4_ARATH (Beta-galactosidase 4 OS=Arabidopsis thaliana GN=BGAL4 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.515e-13
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 2 
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKRS 142
            KC   CG+ +QRWYHVPRSWLK +QN +VVFEELGG+P+ ISLVKR+
Sbjct:  679 KCLSNCGEASQRWYHVPRSWLK-SQNLIVVFEELGGDPNGISLVKRT 724
[Close]
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGAL_DIACA (Putative beta-galactosidase OS=Dianthus caryophyllus GN=CARSR12 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.040e-11
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 2 
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKRSV 145
            KC   CG+ +Q+WYHVPRSWL+P  N LVVFEE GG+   +SLVKR++
Sbjct:  683 KCLSDCGKSSQKWYHVPRSWLQPRGNLLVVFEEWGGDTKWVSLVKRTI 730
The following BLAST results are available for this feature:
BLAST of CX288759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
BGAL4_ARATH5.515e-1370.21Beta-galactosidase 4 OS=Arabidopsis thaliana GN=BG... [more]
BGAL_DIACA1.040e-1160.42Putative beta-galactosidase OS=Dianthus caryophyll... [more]

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Properties
Property NameValue
Genbank descriptionC02004B02SK IF1 Citrus clementina cDNA clone C02004B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288759 ID=CX288759; Name=CX288759; organism=Citrus clementina; type=EST; length=492bp
AAAATGTCAACTAGGTTGCGGGCAACCAACCCAAAGATGGTACCATGTGC
CTCGCTCTTGGTTGAAGCCAACACAGAATTTTTTAGTCGTTTTTGAAGAA
CTAGGAGGTAATCCATCAAGAATTTCTCTTGTCAAGAGATCAGTAACCAG
TGTTTGCGCTGAGGTTGCTGAGTACCATCCAACTATCAAGAACTGGCACA
TAGAAAGCTATGGAAAACCAGAAGAGTTCCACAGCCCCAAGGTTCACTTG
CGATGTAGTCCAGGACATGCCATTTCATCCATCANATTTGCAAGCTTTGG
AACTCCTTTGGGAACTTGTGGTAGTTACCAGCAAGGACCTTGCCATTCTC
CCACTTCTTATGACATCTTANAGAAGAAGTGTGTCGGGAAGCAAAGATGT
GCAGTCACCATATCAAACAGTAACTTTGGCGTAGACCCATGTCCAAATGT
GTTGAAGCGATTATCAGTTGAAGCTATATGTTCTCCTACGAC
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