CX288765
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: KTNB1_STRPU (Katanin p80 WD40-containing subunit B1 OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.872e-12 Identity = 46/153 (30.07%), Postives = 72/153 (47.06%), Query Frame = 2 Query: 59 FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 514 FHP G + +G+++ VK+WDV+ + + + GH V I FS +G +L TA+ D +KLWDL K F+ F++ ++F H +L + + R Q ++ T P G + F PD Y+ S D L FG Sbjct: 109 FHPFGEFVASGSTDTNVKLWDVRRKGCIYTYKGHSDQVNMIKFSPDGKWLVTASEDTTIKLWDLTMGKLFQEFKNHTG--GVTGIEF-HPNEFLLASGSSDRTVQFWDLETFQLVSSTSP---GASAVRSISFHPDGSYLFCSSQDM-LHAFG 254
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: HETE1_PODAN (Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.872e-12 Identity = 48/165 (29.09%), Postives = 81/165 (49.09%), Query Frame = 2 Query: 26 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 511 +G + S AF PDG + +G+ + +KIWD S +GH G V +++FS +G +A+ + DG +K+WD ++ E SV F G +A S+D I+++ AS C +T G ++ V F PD + +A GS D ++++ Sbjct: 1090 EGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGW--VQSVAFSPDGQRVASGSSDKTIKIWDTAS----GTCTQTLEGHGGWVQS--VAFSPDGQRVASGSSDNTIKIW 1246 HSP 2 Score: 68.5514 bits (166), Expect = 2.431e-11 Identity = 48/166 (28.92%), Postives = 80/166 (48.19%), Query Frame = 2 Query: 26 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKAT-CVKFGPDAKYIAVGSMDRNLRVF 511 +G S AF PDG + +G+ + +KIWD S +GH G+V +++FS +G +A+ + D +K+WD ++ E SV F G +A S D I+++ S C +T L G G + V F PD + +A GS+D ++++ Sbjct: 964 EGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGW--VQSVVFSPDGQRVASGSDDHTIKIWDAVS----GTCTQT---LEGHGDSVWSVAFSPDGQRVASGSIDGTIKIW 1120 HSP 3 Score: 67.3958 bits (163), Expect = 5.417e-11 Identity = 47/165 (28.48%), Postives = 78/165 (47.27%), Query Frame = 2 Query: 26 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 511 +G S AF PD + +G+ + +KIWD S +GH G V +++FS +G +A+ + D +K+WD ++ E S SV F G +A S D I+++ AS C +T G+ V F PD + +A GS D+ ++++ Sbjct: 880 EGHGGSVWSVAFSPDRERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSS--VLSVAFSPDGQRVASGSGDKTIKIWDTAS----GTCTQTLEGHGGS--VWSVAFSPDGQRVASGSDDKTIKIW 1036 HSP 4 Score: 66.6254 bits (161), Expect = 9.239e-11 Identity = 47/166 (28.31%), Postives = 79/166 (47.59%), Query Frame = 2 Query: 26 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKAT-CVKFGPDAKYIAVGSMDRNLRVF 511 +G S AF DG + +G+ + +KIWD S +GH G+V +++FS + +A+ + D +K+WD ++ E SV F G +A S D I+++ AS C +T L G G + V F PD + +A GS D+ ++++ Sbjct: 838 EGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRERVASGSDDKTIKIWDAASGTCTQTLEGHGGR--VQSVAFSPDGQRVASGSDDHTIKIWDAAS----GTCTQT---LEGHGSSVLSVAFSPDGQRVASGSGDKTIKIW 994
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: PRP4_ARATH (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 4.899e-12 Identity = 47/171 (27.49%), Postives = 87/171 (50.88%), Query Frame = 2 Query: 26 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD-HSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 529 +G AF DG + + ++L ++WD+++ ++ F GH+ V +++FS NGY+LA+ D ++WDLR K+ + + V ++ G +LA AS D++V + D++ +K+ L+G K + D+ IA S DR ++++ GND Sbjct: 378 EGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPA--HANLVSQVKYEPQEGYFLATASYDMKVNIWSG--RDFSLVKS---LAGHESKVASLDITADSSCIATVSHDRTIKLWTSSGND 541
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: WD51B_MOUSE (WD repeat-containing protein 51B OS=Mus musculus GN=Wdr51b PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 8.357e-12 Identity = 48/164 (29.27%), Postives = 77/164 (46.95%), Query Frame = 2 Query: 29 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 511 G TSA F P+ + T + + + +W +K A ++ GH VT++ FS G LA+A+ D V+LW L + +S E P SVDF G L AS D I+V+ + + ++ + T C KF PD + I S D+ ++++ Sbjct: 16 GHKAAITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYVGHKDVVTSLQFSPQGNLLASASRDRTVRLWVLD--RKGKSSEFKAHTAPVRSVDFSADGQLLVTASEDKSIKVWSMFRQRFLYSLYR------HTHWVRCAKFSPDGRLIVSCSEDKTIKIW 171
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 8.357e-12 Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 2 Query: 29 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 355 G +S FHP G + +G+ + +K+WDV+ + V ++ GH AV + FS +G +LA+A+ D VKLWDL K E S+ + P N ++F + LA SAD Sbjct: 103 GHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMA--ELSEHKGPVNIIEFHPNEYLLASGSAD 210
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: KTNB1_ARATH (Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3) HSP 1 Score: 69.707 bits (169), Expect = 1.091e-11 Identity = 47/166 (28.31%), Postives = 77/166 (46.39%), Query Frame = 2 Query: 29 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKAT----CVKFGPDAKYIAVGSMDRNLRVF 511 G S FHP G +G+ + +KIWD++ + + + GH V + F+ +G ++ + D VK+WDL K F+S + + S+DF LA SAD V W+ ++TF + G T C+ F PD K + G + +L++F Sbjct: 99 GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQ--IQSLDFHPHEFLLATGSADRTV-------KFWD-LETFELIGSGGPETAGVRCLSFNPDGKTVLCG-LQESLKIF 253
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: TAF5L_MOUSE (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.862e-11 Identity = 52/152 (34.21%), Postives = 76/152 (50.00%), Query Frame = 2 Query: 59 FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFES-SDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNL 502 FHP+ L TG+++ V++W + +V F GH G V ++SFS NG YLA+A D +KLWDL F+ +DS T S+ F +A AS D +RV+ + S C T P +G+ V G + ++V M NL Sbjct: 434 FHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSIT---SLAFSPDSGLIASASMDNSVRVWDIRS-----TCCNT-PADGSSGELVGVYTGQMSNVLSVQFMACNL 576
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: PRP4_PONAB (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pongo abelii GN=PRPF4 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.862e-11 Identity = 48/167 (28.74%), Postives = 83/167 (49.70%), Query Frame = 2 Query: 26 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKLKNFRSFESSDSETPTNSVDFDH-SGSYLAVASADIRVYQVASV--KADWNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVF 511 +G G AFH DG + GTG +A ++WD+++ + +GH+ + I+FS NGY++AT + D K+WDLR+ + + + + V F+ G++L + D A + W+ +KT L+G GK + D + IA S DR +++ Sbjct: 361 EGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPA--HQNLVTGVKFEPIHGNFLLTGAYD----NTAKIWTHPGWSPLKT---LAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 518
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: PRP4_HUMAN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens GN=PRPF4 PE=1 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 1.862e-11 Identity = 48/167 (28.74%), Postives = 83/167 (49.70%), Query Frame = 2 Query: 26 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKLKNFRSFESSDSETPTNSVDFDH-SGSYLAVASADIRVYQVASV--KADWNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVF 511 +G G AFH DG + GTG +A ++WD+++ + +GH+ + I+FS NGY++AT + D K+WDLR+ + + + + V F+ G++L + D A + W+ +KT L+G GK + D + IA S DR +++ Sbjct: 362 EGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPA--HQNLVTGVKFEPIHGNFLLTGAYD----NTAKIWTHPGWSPLKT---LAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 519
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: PRP4_BOVIN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos taurus GN=PRPF4 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.862e-11 Identity = 48/167 (28.74%), Postives = 83/167 (49.70%), Query Frame = 2 Query: 26 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKLKNFRSFESSDSETPTNSVDFDH-SGSYLAVASADIRVYQVASV--KADWNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVF 511 +G G AFH DG + GTG +A ++WD+++ + +GH+ + I+FS NGY++AT + D K+WDLR+ + + + + V F+ G++L + D A + W+ +KT L+G GK + D + IA S DR +++ Sbjct: 361 EGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPA--HQNLVTGVKFEPIHGNFLLTGAYD----NTAKIWTHPGWSPLKT---LAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 518 The following BLAST results are available for this feature:
BLAST of CX288765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288765 ID=CX288765; Name=CX288765; organism=Citrus clementina; type=EST; length=559bpback to top |