CX288765

Overview
NameCX288765
Unique NameCX288765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig148 contig Ccv1_Contig148:1..559. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: KTNB1_STRPU (Katanin p80 WD40-containing subunit B1 OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.872e-12
Identity = 46/153 (30.07%), Postives = 72/153 (47.06%), Query Frame = 2
Query:   59 FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 514
            FHP G  + +G+++  VK+WDV+ +  +  + GH   V  I FS +G +L TA+ D  +KLWDL   K F+ F++         ++F H   +L  + +  R  Q   ++       T P   G      + F PD  Y+   S D  L  FG
Sbjct:  109 FHPFGEFVASGSTDTNVKLWDVRRKGCIYTYKGHSDQVNMIKFSPDGKWLVTASEDTTIKLWDLTMGKLFQEFKNHTG--GVTGIEF-HPNEFLLASGSSDRTVQFWDLETFQLVSSTSP---GASAVRSISFHPDGSYLFCSSQDM-LHAFG 254          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: HETE1_PODAN (Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.872e-12
Identity = 48/165 (29.09%), Postives = 81/165 (49.09%), Query Frame = 2
Query:   26 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 511
            +G  +   S AF PDG  + +G+ +  +KIWD  S       +GH G V +++FS +G  +A+ + DG +K+WD       ++ E         SV F   G  +A  S+D  I+++  AS      C +T     G  ++  V F PD + +A GS D  ++++
Sbjct: 1090 EGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGW--VQSVAFSPDGQRVASGSSDKTIKIWDTAS----GTCTQTLEGHGGWVQS--VAFSPDGQRVASGSSDNTIKIW 1246          

HSP 2 Score: 68.5514 bits (166), Expect = 2.431e-11
Identity = 48/166 (28.92%), Postives = 80/166 (48.19%), Query Frame = 2
Query:   26 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKAT-CVKFGPDAKYIAVGSMDRNLRVF 511
            +G      S AF PDG  + +G+ +  +KIWD  S       +GH G+V +++FS +G  +A+ + D  +K+WD       ++ E         SV F   G  +A  S D  I+++   S      C +T   L G G +   V F PD + +A GS+D  ++++
Sbjct:  964 EGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGW--VQSVVFSPDGQRVASGSDDHTIKIWDAVS----GTCTQT---LEGHGDSVWSVAFSPDGQRVASGSIDGTIKIW 1120          

HSP 3 Score: 67.3958 bits (163), Expect = 5.417e-11
Identity = 47/165 (28.48%), Postives = 78/165 (47.27%), Query Frame = 2
Query:   26 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 511
            +G      S AF PD   + +G+ +  +KIWD  S       +GH G V +++FS +G  +A+ + D  +K+WD       ++ E   S     SV F   G  +A  S D  I+++  AS      C +T     G+     V F PD + +A GS D+ ++++
Sbjct:  880 EGHGGSVWSVAFSPDRERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSS--VLSVAFSPDGQRVASGSGDKTIKIWDTAS----GTCTQTLEGHGGS--VWSVAFSPDGQRVASGSDDKTIKIW 1036          

HSP 4 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 47/166 (28.31%), Postives = 79/166 (47.59%), Query Frame = 2
Query:   26 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKAT-CVKFGPDAKYIAVGSMDRNLRVF 511
            +G      S AF  DG  + +G+ +  +KIWD  S       +GH G+V +++FS +   +A+ + D  +K+WD       ++ E         SV F   G  +A  S D  I+++  AS      C +T   L G G +   V F PD + +A GS D+ ++++
Sbjct:  838 EGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRERVASGSDDKTIKIWDAASGTCTQTLEGHGGR--VQSVAFSPDGQRVASGSDDHTIKIWDAAS----GTCTQT---LEGHGSSVLSVAFSPDGQRVASGSGDKTIKIW 994          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: PRP4_ARATH (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.899e-12
Identity = 47/171 (27.49%), Postives = 87/171 (50.88%), Query Frame = 2
Query:   26 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD-HSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 529
            +G        AF  DG +  +   ++L ++WD+++  ++  F GH+  V +++FS NGY+LA+   D   ++WDLR  K+     +       + V ++   G +LA AS D++V   +    D++ +K+   L+G   K   +    D+  IA  S DR ++++   GND
Sbjct:  378 EGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPA--HANLVSQVKYEPQEGYFLATASYDMKVNIWSG--RDFSLVKS---LAGHESKVASLDITADSSCIATVSHDRTIKLWTSSGND 541          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: WD51B_MOUSE (WD repeat-containing protein 51B OS=Mus musculus GN=Wdr51b PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.357e-12
Identity = 48/164 (29.27%), Postives = 77/164 (46.95%), Query Frame = 2
Query:   29 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 511
            G     TSA F P+   + T + +  + +W +K  A   ++ GH   VT++ FS  G  LA+A+ D  V+LW L   +  +S E      P  SVDF   G  L  AS D  I+V+ +   +  ++  +       T    C KF PD + I   S D+ ++++
Sbjct:   16 GHKAAITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYVGHKDVVTSLQFSPQGNLLASASRDRTVRLWVLD--RKGKSSEFKAHTAPVRSVDFSADGQLLVTASEDKSIKVWSMFRQRFLYSLYR------HTHWVRCAKFSPDGRLIVSCSEDKTIKIW 171          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.357e-12
Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 2
Query:   29 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 355
            G     +S  FHP G  + +G+ +  +K+WDV+ +  V ++ GH  AV  + FS +G +LA+A+ D  VKLWDL   K     E S+ + P N ++F  +   LA  SAD
Sbjct:  103 GHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMA--ELSEHKGPVNIIEFHPNEYLLASGSAD 210          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: KTNB1_ARATH (Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.091e-11
Identity = 47/166 (28.31%), Postives = 77/166 (46.39%), Query Frame = 2
Query:   29 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKAT----CVKFGPDAKYIAVGSMDRNLRVF 511
            G      S  FHP G    +G+ +  +KIWD++ +  +  + GH   V  + F+ +G ++ +   D  VK+WDL   K    F+S + +    S+DF      LA  SAD  V         W+ ++TF  +   G  T    C+ F PD K +  G +  +L++F
Sbjct:   99 GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQ--IQSLDFHPHEFLLATGSADRTV-------KFWD-LETFELIGSGGPETAGVRCLSFNPDGKTVLCG-LQESLKIF 253          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: TAF5L_MOUSE (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.862e-11
Identity = 52/152 (34.21%), Postives = 76/152 (50.00%), Query Frame = 2
Query:   59 FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFES-SDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNL 502
            FHP+   L TG+++  V++W  +   +V  F GH G V ++SFS NG YLA+A  D  +KLWDL     F+     +DS T   S+ F      +A AS D  +RV+ + S      C  T P    +G+   V  G  +  ++V  M  NL
Sbjct:  434 FHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSIT---SLAFSPDSGLIASASMDNSVRVWDIRS-----TCCNT-PADGSSGELVGVYTGQMSNVLSVQFMACNL 576          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: PRP4_PONAB (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pongo abelii GN=PRPF4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.862e-11
Identity = 48/167 (28.74%), Postives = 83/167 (49.70%), Query Frame = 2
Query:   26 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKLKNFRSFESSDSETPTNSVDFDH-SGSYLAVASADIRVYQVASV--KADWNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVF 511
            +G   G    AFH DG + GTG  +A  ++WD+++   +   +GH+  +  I+FS NGY++AT + D   K+WDLR+ +   +  +   +     V F+   G++L   + D      A +     W+ +KT   L+G  GK   +    D + IA  S DR  +++
Sbjct:  361 EGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPA--HQNLVTGVKFEPIHGNFLLTGAYD----NTAKIWTHPGWSPLKT---LAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 518          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: PRP4_HUMAN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens GN=PRPF4 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.862e-11
Identity = 48/167 (28.74%), Postives = 83/167 (49.70%), Query Frame = 2
Query:   26 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKLKNFRSFESSDSETPTNSVDFDH-SGSYLAVASADIRVYQVASV--KADWNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVF 511
            +G   G    AFH DG + GTG  +A  ++WD+++   +   +GH+  +  I+FS NGY++AT + D   K+WDLR+ +   +  +   +     V F+   G++L   + D      A +     W+ +KT   L+G  GK   +    D + IA  S DR  +++
Sbjct:  362 EGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPA--HQNLVTGVKFEPIHGNFLLTGAYD----NTAKIWTHPGWSPLKT---LAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 519          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: PRP4_BOVIN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos taurus GN=PRPF4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.862e-11
Identity = 48/167 (28.74%), Postives = 83/167 (49.70%), Query Frame = 2
Query:   26 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKLKNFRSFESSDSETPTNSVDFDH-SGSYLAVASADIRVYQVASV--KADWNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVF 511
            +G   G    AFH DG + GTG  +A  ++WD+++   +   +GH+  +  I+FS NGY++AT + D   K+WDLR+ +   +  +   +     V F+   G++L   + D      A +     W+ +KT   L+G  GK   +    D + IA  S DR  +++
Sbjct:  361 EGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPA--HQNLVTGVKFEPIHGNFLLTGAYD----NTAKIWTHPGWSPLKT---LAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 518          
The following BLAST results are available for this feature:
BLAST of CX288765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
KTNB1_STRPU2.872e-1230.07Katanin p80 WD40-containing subunit B1 OS=Strongyl... [more]
HETE1_PODAN2.872e-1229.09Vegetative incompatibility protein HET-E-1 OS=Podo... [more]
PRP4_ARATH4.899e-1227.49U4/U6 small nuclear ribonucleoprotein PRP4-like pr... [more]
WD51B_MOUSE8.357e-1229.27WD repeat-containing protein 51B OS=Mus musculus G... [more]
KTNB1_XENLA8.357e-1236.36Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
KTNB1_ARATH1.091e-1128.31Katanin p80 WD40 repeat-containing subunit B1 homo... [more]
TAF5L_MOUSE1.862e-1134.21TAF5-like RNA polymerase II p300/CBP-associated fa... [more]
PRP4_PONAB1.862e-1128.74U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pong... [more]
PRP4_HUMAN1.862e-1128.74U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo... [more]
PRP4_BOVIN1.862e-1128.74U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos ... [more]

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Properties
Property NameValue
Genbank descriptionC02004B08SK IF1 Citrus clementina cDNA clone C02004B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288765 ID=CX288765; Name=CX288765; organism=Citrus clementina; type=EST; length=559bp
GACACAGGTTTCAGATGCTGGAACCGACGGTAGACCTGAAGGTTATACAT
CTGCAGCTTTTCATCCTGATGGTCTCATCCTTGGAACGGGCACCTCAGAA
GCTCTTGTTAAGATTTGGGATGTGAAAAGTCAGGCAAATGTGGCGAAATT
TGATGGACATGTTGGAGCAGTTACAGCCATATCCTTTTCAGAAAATGGTT
ACTACCTTGCGACGGCAGCCCATGATGGTGTGAAGCTGTGGGACCTGCGT
AAATTGAAGAACTTCCGGTCATTTGAATCTTCTGATTCTGAGACACCTAC
CAACTCAGTGGATTTCGACCATAGTGGATCTTACCTCGCAGTTGCAAGTG
CAGATATAAGAGTCTACCAAGTGGCCAGTGTTAAAGCTGATTGGAATTGT
ATCAAAACTTTTCCTGATTTATCAGGCACAGGTAAGGCAACTTGTGTGAA
ATTTGGTCCAGATGCTAAATACATTGCTGTGGGATCAATGGACCGCAATC
TACGTGTATTTGGTCTGCCTGGCAATGATGCTCCATCAAAATCATAGAGA
ATTCTAAAA
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