CX288765

Overview
NameCX288765
Unique NameCX288765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig148 contig Ccv1_Contig148:1..559. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.862e-11
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 2
Query:   29 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 355
            G      S  FHP G  + +G+ +  +K+WDV+ +  V ++ GH  AV  + FS +G +LA+A+ D  VKLWDL   K     E S+ + P N ++F  +   LA  SAD
Sbjct:  103 GHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMA--ELSEHKGPVNIIEFHPNEYLLASGSAD 210          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: PRP4_MOUSE (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Mus musculus GN=Prpf4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.431e-11
Identity = 48/167 (28.74%), Postives = 82/167 (49.10%), Query Frame = 2
Query:   26 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKLKNFRSFESSDSETPTNSVDFDH-SGSYLAVASADIRVYQVASV--KADWNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVF 511
            +G   G    AFH DG + GTG  +A  ++WD+++   +   +GH+  +  I+FS NGY++AT + D   K+WDLR+ +   +  +   +     V F+   G +L   + D      A +     W+ +KT   L+G  GK   +    D + IA  S DR  +++
Sbjct:  361 EGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPA--HQNLVTGVKFEPIHGDFLLTGAYD----NTAKIWTHPGWSPLKT---LAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 518          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: RCO1_NEUCR (Transcriptional repressor rco-1 OS=Neurospora crassa GN=rco-1 PE=4 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.175e-11
Identity = 50/179 (27.93%), Postives = 85/179 (47.49%), Query Frame = 2
Query:   50 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF------GLPGNDAPSKS*RILK 559
            S  F PDG  L TG  + L+++WD++S+     F GH   + ++ FS +G  +A+ + D  V+LWD+   +N       D  T   +V       ++A  S D  +RV+ +    A+       PD         V F PD + +  GS+D+ ++++      G+P + AP K  R +K
Sbjct:  349 SVCFSPDGKYLATGAEDKLIRVWDIQSRTIRNTFHGHEQDIYSLDFSRDGRTIASGSGDRTVRLWDIETGQNTSVLSIEDGVT---TVAISPDKQFVAAGSLDKSVRVWDMRGYLAE---RLEGPD-GHKDSVYSVAFSPDGRNLVSGSLDKTIKMWELSAPRGIP-SSAPPKGGRCIK 519          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: PWP2_SCHPO (Periodic tryptophan protein 2 homolog OS=Schizosaccharomyces pombe GN=SPBC713.04c PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.147e-11
Identity = 43/162 (26.54%), Postives = 80/162 (49.38%), Query Frame = 2
Query:   38 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517
            +  ++  +  DG  + TG  +  +K+WD+ S   +  F  H  AV+ + FS+ G  L +++ DG V+ WDL + +NFR+F ++ S    + +  D SG  +   S D     + SV+      +    L+G  G  + + F      +A GS D+ +R++ +
Sbjct:  340 DALSTLQYSSDGQRIITGADDGKIKVWDMNSGFCIVTFTQHTSAVSGLCFSKRGNVLFSSSLDGSVRAWDLIRYRNFRTF-TAPSRVQFSCIAVDPSGEIVCAGSQDSFEIFMWSVQTG----QLLETLAGHEGPVSSLSFNSSGSLLASGSWDKTVRIWDI 496          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: TUP12_SCHPO (Transcriptional repressor tup12 OS=Schizosaccharomyces pombe GN=tup12 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.074e-11
Identity = 49/169 (28.99%), Postives = 79/169 (46.75%), Query Frame = 2
Query:   50 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKAT-CVKFGPDAKYIAVGSMDRNLRVFGLP--GNDAPS 538
            S AF PDG  L TG  +  ++IWD+  +       GH   + ++ FS++G  L + + D  V LWD+   +      + D  T   +V F   G ++A  S D  IR++  +    +         L G  ++   V F PD KY+  GS+D  ++++ L    N APS
Sbjct:  339 SVAFSPDGKYLATGVEDQQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTLVSGSGDRTVCLWDVEAGEQKLILHTDDGVT---TVMFSPDGQFIAAGSLDKVIRIWTSSGTLVE--------QLHGHEESVYSVAFSPDGKYLVSGSLDNTIKLWELQCVSNVAPS 496          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: WDS_DROME (Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 41/164 (25.00%), Postives = 80/164 (48.78%), Query Frame = 2
Query:   29 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 511
            G   G +  A+  D  +L +G+ +  +K+W++ +  ++    GH   V   +F+     + + + D  V++WD+R  K  ++  +     P ++V F+  GS +  +S D   R++  AS      C+KT  D       + VKF P+ KYI   ++D  L+++
Sbjct:  112 GHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDTAS----GQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 268          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: WD51A_BOVIN (WD repeat-containing protein 51A OS=Bos taurus GN=WDR51A PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 46/155 (29.68%), Postives = 76/155 (49.03%), Query Frame = 2
Query:   53 AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVF 511
            A F PDG ++ + + +  VK+WD  S+  V  +  H G VT + F  +G  +A A  D  VK+WD+R  +  + ++   +    N++ F  SG+YL  AS+D  +  +  ++      +    L G  G AT V F    +Y A G  D  + V+
Sbjct:  151 AKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSA--AVNALSFHPSGNYLVTASSDSTLKILDLMEG-----RLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: TUP11_SCHPO (Transcriptional repressor tup11 OS=Schizosaccharomyces pombe GN=tup11 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 44/158 (27.85%), Postives = 78/158 (49.37%), Query Frame = 2
Query:   56 AFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKAT-CVKFGPDAKYIAVGSMDRNLRVFGL 517
            AF PDG  L TGT +  +K+WD+ +Q     F GH   + ++ FS NG ++ + + D   +LWD+   +     E  +  T   ++    +  ++AV S D  IRV+ V+    +         L G  ++   + F PD+  +  GS+D+ ++V+ L
Sbjct:  367 AFSPDGKYLVTGTEDRQIKLWDLSTQKVRYVFSGHEQDIYSLDFSHNGRFIVSGSGDRTARLWDVETGQCILKLEIENGVT---AIAISPNDQFIAVGSLDQIIRVWSVSGTLVE--------RLEGHKESVYSIAFSPDSSILLSGSLDKTIKVWEL 513          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: PWP2_HUMAN (Periodic tryptophan protein 2 homolog OS=Homo sapiens GN=PWP2 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2
Query:   29 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517
            G      + A+ PDG  + TG  +  VK+W+  S      F  H   VT ++F+  GY + T++ DG V+ +DL + +NFR+F +S   T  + V  D SG  ++  + D     V S++      +    LSG  G  + + F P    +A  S D+ +R++ +
Sbjct:  371 GHFNSMVALAYSPDGQYIVTGGDDGKVKVWNTLSGFCFVTFTEHSSGVTGVTFTATGYVVVTSSMDGTVRAFDLHRYRNFRTF-TSPRPTQFSCVAVDASGEIVSAGAQDSFEIFVWSMQTG----RLLDVLSGHEGPISGLCFNPMKSVLASASWDKTVRLWDM 530          
The following BLAST results are available for this feature:
BLAST of CX288765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
KTNB1_XENTR1.862e-1136.36Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
PRP4_MOUSE2.431e-1128.74U4/U6 small nuclear ribonucleoprotein Prp4 OS=Mus ... [more]
RCO1_NEUCR3.175e-1127.93Transcriptional repressor rco-1 OS=Neurospora cras... [more]
PWP2_SCHPO4.147e-1126.54Periodic tryptophan protein 2 homolog OS=Schizosac... [more]
TUP12_SCHPO7.074e-1128.99Transcriptional repressor tup12 OS=Schizosaccharom... [more]
WDS_DROME9.239e-1125.00Protein will die slowly OS=Drosophila melanogaster... [more]
WD51A_BOVIN9.239e-1129.68WD repeat-containing protein 51A OS=Bos taurus GN=... [more]
TUP11_SCHPO9.239e-1127.85Transcriptional repressor tup11 OS=Schizosaccharom... [more]
PWP2_HUMAN9.239e-1128.48Periodic tryptophan protein 2 homolog OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionC02004B08SK IF1 Citrus clementina cDNA clone C02004B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288765 ID=CX288765; Name=CX288765; organism=Citrus clementina; type=EST; length=559bp
GACACAGGTTTCAGATGCTGGAACCGACGGTAGACCTGAAGGTTATACAT
CTGCAGCTTTTCATCCTGATGGTCTCATCCTTGGAACGGGCACCTCAGAA
GCTCTTGTTAAGATTTGGGATGTGAAAAGTCAGGCAAATGTGGCGAAATT
TGATGGACATGTTGGAGCAGTTACAGCCATATCCTTTTCAGAAAATGGTT
ACTACCTTGCGACGGCAGCCCATGATGGTGTGAAGCTGTGGGACCTGCGT
AAATTGAAGAACTTCCGGTCATTTGAATCTTCTGATTCTGAGACACCTAC
CAACTCAGTGGATTTCGACCATAGTGGATCTTACCTCGCAGTTGCAAGTG
CAGATATAAGAGTCTACCAAGTGGCCAGTGTTAAAGCTGATTGGAATTGT
ATCAAAACTTTTCCTGATTTATCAGGCACAGGTAAGGCAACTTGTGTGAA
ATTTGGTCCAGATGCTAAATACATTGCTGTGGGATCAATGGACCGCAATC
TACGTGTATTTGGTCTGCCTGGCAATGATGCTCCATCAAAATCATAGAGA
ATTCTAAAA
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