CX288770

Overview
NameCX288770
Unique NameCX288770
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length508
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288770_ssr493 microsatellite CX288770_ssr493:493..506. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11476 contig Ccv1_Contig11476:911..1418. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C07_ORYSJ (Probable protein phosphatase 2C 7 OS=Oryza sativa subsp. japonica GN=Os01g0618200 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.800e-17
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGP-RVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 261
            KP+R DE  RIE AGG V+ W G  RV GVLAMSRA G+ +LK +V++EPEV   E   + E LILASDGLWDVVSNE A + V+
Sbjct:  246 KPNRKDERKRIENAGG-VVTWSGTWRVGGVLAMSRAFGNRFLKRFVVAEPEVQEQEIDDDLEFLILASDGLWDVVSNEHAVAFVK 329          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C52_ORYSJ (Probable protein phosphatase 2C 52 OS=Oryza sativa subsp. japonica GN=Os05g0587100 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.351e-17
Identity = 50/85 (58.82%), Postives = 61/85 (71.76%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGP-RVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 261
            KP+R DE  RIE+AGG V+ W G  RV GVLAMSRA G+  LK +V+++PE+   E   E E LILASDGLWDVV NE A S+V+
Sbjct:  360 KPNRSDERKRIESAGG-VVMWAGTWRVGGVLAMSRAFGNRLLKQFVVADPEIQEQEIDDELEFLILASDGLWDVVPNEDAVSLVK 443          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C76_ARATH (Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana GN=At5g53140 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.010e-17
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGP-RVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRT 264
            KP+R DE  RIE+AGG VI W G  RV GVLAMSRA G+  LK +V++EPE+   E   E E L+LASDGLWDVV NE A ++ ++
Sbjct:  232 KPNRSDERKRIESAGG-VIMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEIDHEAELLVLASDGLWDVVPNEDAVALAQS 316          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C59_ARATH (Probable protein phosphatase 2C 59 OS=Arabidopsis thaliana GN=WIN2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.933e-17
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 261
            KPD+ DE  RIE AGG V++    RV GVLA+SRA GD  LK YV+++PE+   +  +  E LILASDGLWDVVSNE A  +++
Sbjct:  164 KPDQSDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVGMIK 247          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C11_ARATH (Probable protein phosphatase 2C 11 OS=Arabidopsis thaliana GN=At1g43900 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.933e-17
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 261
            KPDR DE  RIE AGG +I+    RV G+LA+SRA GD  LKPYVI+EPE+   E  +  E +++ASDGLW+V+SN+ A ++VR
Sbjct:  254 KPDRSDERQRIEDAGGFIIWAGTWRVGGILAVSRAFGDKQLKPYVIAEPEIQ-EEDISTLEFIVVASDGLWNVLSNKDAVAIVR 336          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C71_ARATH (Probable protein phosphatase 2C 71 OS=Arabidopsis thaliana GN=At5g24940 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.599e-16
Identity = 47/84 (55.95%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 261
            KPD+ DE  RIE AGG V++    RV GVLA+SRA GD  LK YV+++PE+   +     E LILASDGLWDV SNE A +VV+
Sbjct:  164 KPDQSDERERIENAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDDSLEFLILASDGLWDVFSNEEAVAVVK 247          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C59_ORYSJ (Probable protein phosphatase 2C 59 OS=Oryza sativa subsp. japonica GN=Os06g0698300 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.599e-16
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 261
            KPD+ DE  RIE AGG V++    RV GVLA+SRA GD  LK YV+++PE+      +  E LILASDGLWDVV+NE A ++V+
Sbjct:  195 KPDQSDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVADPEIKEEVVDSSLEFLILASDGLWDVVTNEEAVAMVK 278          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C10_ORYSJ (Probable protein phosphatase 2C 10 OS=Oryza sativa subsp. japonica GN=Os02g0149800 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.599e-16
Identity = 47/84 (55.95%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 261
            KPD+ DE  RIE AGG V++    RV GVLA+SRA GD  LK YV+++PE+      +  E LILASDGLWDVVSN+ A  +VR
Sbjct:  213 KPDQSDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVADPEIKEEIVDSSLEFLILASDGLWDVVSNKEAVDMVR 296          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C69_ARATH (Probable protein phosphatase 2C 69 OS=Arabidopsis thaliana GN=At5g10740 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.790e-16
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 261
            KPD+ DE  RIE AGG V++    RV GVLA+SRA GD  LK YV+++PE+   +     E LILASDGLWDV SNE A ++V+
Sbjct:  164 KPDQSDERERIENAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDDTLEFLILASDGLWDVFSNEAAVAMVK 247          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C14_ARATH (Probable protein phosphatase 2C 14 OS=Arabidopsis thaliana GN=At1g67820 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.290e-15
Identity = 46/84 (54.76%), Postives = 57/84 (67.86%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGP-RVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVV 258
            KP R DE  RIE+ GG V    G  RV G+LA+SR+IGD +LK +V++EPE  V E   + E L+LASDGLWDVVSN+ A   V
Sbjct:  250 KPGRDDEKERIESQGGYVDNHQGAWRVQGILAVSRSIGDAHLKKWVVAEPETRVLELEQDMEFLVLASDGLWDVVSNQEAVYTV 333          
The following BLAST results are available for this feature:
BLAST of CX288770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
P2C07_ORYSJ1.800e-1760.00Probable protein phosphatase 2C 7 OS=Oryza sativa ... [more]
P2C52_ORYSJ2.351e-1758.82Probable protein phosphatase 2C 52 OS=Oryza sativa... [more]
P2C76_ARATH4.010e-1756.98Probable protein phosphatase 2C 76 OS=Arabidopsis ... [more]
P2C59_ARATH8.933e-1754.76Probable protein phosphatase 2C 59 OS=Arabidopsis ... [more]
P2C11_ARATH8.933e-1754.76Probable protein phosphatase 2C 11 OS=Arabidopsis ... [more]
P2C71_ARATH2.599e-1655.95Probable protein phosphatase 2C 71 OS=Arabidopsis ... [more]
P2C59_ORYSJ2.599e-1654.76Probable protein phosphatase 2C 59 OS=Oryza sativa... [more]
P2C10_ORYSJ2.599e-1655.95Probable protein phosphatase 2C 10 OS=Oryza sativa... [more]
P2C69_ARATH5.790e-1654.76Probable protein phosphatase 2C 69 OS=Arabidopsis ... [more]
P2C14_ARATH1.290e-1554.76Probable protein phosphatase 2C 14 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC02004C01SK IF1 Citrus clementina cDNA clone C02004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288770 ID=CX288770; Name=CX288770; organism=Citrus clementina; type=EST; length=508bp
GCACGAGATAAACCTGATCGCCCGGATGAGTTGCTTAGAATCGAAGCCGC
CGGCGGCCGTGTGATTTACTGGGACGGCCCGAGAGTGCTTGGCGTTCTGG
CGATGTCGAGAGCGATCGGAGACAATTACTTAAAGCCGTATGTGATATCG
GAGCCGGAGGTGACCGTGACTGAGCGTACGGCGGAGGATGAGTGTTTGAT
TTTGGCGAGCGATGGGTTATGGGACGTGGTGTCGAACGAGACGGCGTGCA
GCGTGGTGCGCACGTGCTTCCGAGCTCAGAAGGCGGCGGCTGCAGCTTCA
CCACCCGGATCGCCGGGGAGCGAGGTGGCAGTGTCTGGTCAAAGCTCTGA
CAAAGCTTGCTTGGACGCGTCAATTTTGTTGACCAAGCTGGCCTTGGCTA
GGCGTAGTTCGGATAATGTCAGCGTTGTGGTGGTCGATTTAAGGAGGAAT
CAAAAGTCAAAAGCAGGGATTAAGTAGTTAATTAAAATGAGTTATATATA
TATATAAT
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