CX288770

Overview
NameCX288770
Unique NameCX288770
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length508
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288770_ssr493 microsatellite CX288770_ssr493:493..506. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11476 contig Ccv1_Contig11476:911..1418. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C45_ORYSJ (Probable protein phosphatase 2C 45 OS=Oryza sativa subsp. japonica GN=Os04g0659500 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.685e-15
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRT 264
            KPD+ DE  RIE AGG V++    RV GVLA+SRA GD  LK YV+ +PE+         E LILASDGLWDVV+NE A  + R+
Sbjct:  157 KPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVVDPEIREEVIDHSLEFLILASDGLWDVVTNEEAVDMTRS 241          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C30_ARATH (Probable protein phosphatase 2C 30 OS=Arabidopsis thaliana GN=PP2C5 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.753e-15
Identity = 46/84 (54.76%), Postives = 55/84 (65.48%), Query Frame = 1
Query:   13 PDRPDELLRIEAAGGRVIYWDGP-RVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 261
            P + +EL RIEA GG V   +G  R+ G LA+SR IGD YLK +VI+EPE        E E LILASDGLWD V+N+ A  VVR
Sbjct:  264 PSQANELKRIEALGGYVDCCNGVWRIQGTLAVSRGIGDRYLKEWVIAEPETRTLRIKPEFEFLILASDGLWDKVTNQEAVDVVR 347          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C02_ARATH (Probable protein phosphatase 2C 2 OS=Arabidopsis thaliana GN=At1g07160 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.402e-15
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGP-RVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 261
            +P R DE  RIE++GG V  ++   R+ G LA+SR IGD +LK ++ISEPE+ +     + E LILASDGLWD VSN+ A  + R
Sbjct:  253 RPSRDDERNRIESSGGYVDTFNSVWRIQGSLAVSRGIGDAHLKQWIISEPEINILRINPQHEFLILASDGLWDKVSNQEAVDIAR 337          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C56_ORYSJ (Probable protein phosphatase 2C 56 OS=Oryza sativa subsp. japonica GN=Os06g0526800/Os06g0526950 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 8.361e-15
Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 261
            KP+R DE  RIE AGG V++ D  RV G+LAMSRA G+  LK YV +EP++         E LILA+DGLWDV+ NE A S+++
Sbjct:  228 KPNRKDEQKRIEDAGGIVVFDDTWRVNGLLAMSRAFGNRALKHYVKAEPDIQEKVVDESLEYLILATDGLWDVMRNEDAVSLLK 311          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C25_ARATH (Probable protein phosphatase 2C 25 OS=Arabidopsis thaliana GN=At2g30020 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.433e-14
Identity = 45/93 (48.39%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGP-RVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR-TCFRAQK 282
            +P R DE  RIE  GG V  + G  R+ G LA+SR IGD  LK +VI+EPE  ++    + E LILASDGLWD VSN+ A  + R  C   +K
Sbjct:  270 RPSRDDERKRIETTGGYVDTFHGVWRIQGSLAVSRGIGDAQLKKWVIAEPETKISRIEHDHEFLILASDGLWDKVSNQEAVDIARPLCLGTEK 362          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C32_ORYSJ (Probable protein phosphatase 2C 32 OS=Oryza sativa subsp. japonica GN=Os03g0292100 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.513e-13
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGP-RVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCF 270
            +  R DE  RIE  GG V+ + G  RV G LA+SR IGD +LK +V+S+P+ T     ++ E LILASDGLWD V N+ A  + R  +
Sbjct:  264 RASREDERERIENLGGFVVNYRGTWRVQGSLAVSRGIGDAHLKQWVVSDPDTTTLGVDSQCEFLILASDGLWDKVENQEAVDIARPLY 351          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C55_ORYSJ (Probable protein phosphatase 2C 55 OS=Oryza sativa subsp. japonica GN=Os06g0526700 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.022e-12
Identity = 41/86 (47.67%), Postives = 59/86 (68.60%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAED--ECLILASDGLWDVVSNETACSVVR 261
            KP++ DE  RIE AGG V+  D  RV G+LA+SRA G+  +K YV +EP   + E+  ++  E L+LA+DGLWDV+ NE A S+++
Sbjct:  254 KPNKKDERKRIEDAGGIVVSDDIWRVDGILAVSRAFGNRLMKRYVKAEP--NIQEKVVDEGLEYLVLATDGLWDVMRNEDAVSLLK 337          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: PPM1F_MOUSE (Protein phosphatase 1F OS=Mus musculus GN=Ppm1f PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.335e-12
Identity = 40/83 (48.19%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVV 258
            KP+R DE  RIEA GG V   D  RV G LA+SRAIGD + KPYV  E +    E T  ++ L+LA DG +DVV +     +V
Sbjct:  290 KPERQDEKARIEALGGFVSLMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRELTGSEDYLLLACDGFFDVVPHHEVTGLV 372          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: PPM1F_HUMAN (Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.743e-12
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQK 282
            +P+R DE  RIEA GG V + D  RV G LA+SRAIGD + KPYV  E +      T  ++ L+LA DG +DVV ++    +V++    Q+
Sbjct:  293 RPERQDEKARIEALGGFVSHMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRALTGSEDYLLLACDGFFDVVPHQEVVGLVQSHLTRQQ 383          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: PPM1F_RAT (Protein phosphatase 1F OS=Rattus norvegicus GN=Ppm1f PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.072e-12
Identity = 42/91 (46.15%), Postives = 52/91 (57.14%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQK 282
            KP+R DE  RIEA GG V   D  RV G LA+SRAIGD + KPYV  E +    E T  ++ L+LA DG +DVV +     +V      QK
Sbjct:  289 KPERQDEKSRIEALGGFVSLMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRELTGLEDYLLLACDGFFDVVPHHEIPGLVHGHLLRQK 379          
The following BLAST results are available for this feature:
BLAST of CX288770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
P2C45_ORYSJ1.685e-1554.12Probable protein phosphatase 2C 45 OS=Oryza sativa... [more]
P2C30_ARATH3.753e-1554.76Probable protein phosphatase 2C 30 OS=Arabidopsis ... [more]
P2C02_ARATH6.402e-1549.41Probable protein phosphatase 2C 2 OS=Arabidopsis t... [more]
P2C56_ORYSJ8.361e-1552.38Probable protein phosphatase 2C 56 OS=Oryza sativa... [more]
P2C25_ARATH2.433e-1448.39Probable protein phosphatase 2C 25 OS=Arabidopsis ... [more]
P2C32_ORYSJ3.513e-1346.59Probable protein phosphatase 2C 32 OS=Oryza sativa... [more]
P2C55_ORYSJ1.022e-1247.67Probable protein phosphatase 2C 55 OS=Oryza sativa... [more]
PPM1F_MOUSE1.335e-1248.19Protein phosphatase 1F OS=Mus musculus GN=Ppm1f PE... [more]
PPM1F_HUMAN1.743e-1242.86Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE... [more]
PPM1F_RAT5.072e-1246.15Protein phosphatase 1F OS=Rattus norvegicus GN=Ppm... [more]

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Properties
Property NameValue
Genbank descriptionC02004C01SK IF1 Citrus clementina cDNA clone C02004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288770 ID=CX288770; Name=CX288770; organism=Citrus clementina; type=EST; length=508bp
GCACGAGATAAACCTGATCGCCCGGATGAGTTGCTTAGAATCGAAGCCGC
CGGCGGCCGTGTGATTTACTGGGACGGCCCGAGAGTGCTTGGCGTTCTGG
CGATGTCGAGAGCGATCGGAGACAATTACTTAAAGCCGTATGTGATATCG
GAGCCGGAGGTGACCGTGACTGAGCGTACGGCGGAGGATGAGTGTTTGAT
TTTGGCGAGCGATGGGTTATGGGACGTGGTGTCGAACGAGACGGCGTGCA
GCGTGGTGCGCACGTGCTTCCGAGCTCAGAAGGCGGCGGCTGCAGCTTCA
CCACCCGGATCGCCGGGGAGCGAGGTGGCAGTGTCTGGTCAAAGCTCTGA
CAAAGCTTGCTTGGACGCGTCAATTTTGTTGACCAAGCTGGCCTTGGCTA
GGCGTAGTTCGGATAATGTCAGCGTTGTGGTGGTCGATTTAAGGAGGAAT
CAAAAGTCAAAAGCAGGGATTAAGTAGTTAATTAAAATGAGTTATATATA
TATATAAT
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