CX288779

Overview
NameCX288779
Unique NameCX288779
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig150 contig Ccv1_Contig150:1..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288779 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 2.264e-27
Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 2
Query:    5 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 271
            T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  305 TDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CX288779 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 2.264e-27
Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 2
Query:    5 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 271
            T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  305 TDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CX288779 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 2.264e-27
Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 2
Query:    5 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 271
            T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  305 TDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 393          
BLAST of CX288779 vs. ExPASy Swiss-Prot
Match: RL3_MACFA (60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 2.957e-27
Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 2
Query:    5 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 271
            T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  305 TDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CX288779 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 2.957e-27
Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 2
Query:    5 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 271
            T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  305 TDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CX288779 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.045e-27
Identity = 58/89 (65.17%), Postives = 69/89 (77.53%), Query Frame = 2
Query:    5 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 271
            TEFDRT+K ITPMGGF HYG VN D++++KG   G +KRVVTLR+SL   TSR ALEE+ LK+IDT+SKFG GRFQT  EK  + G LK
Sbjct:  297 TEFDRTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRKSLYTSTSRRALEEVNLKWIDTASKFGKGRFQTPAEKHAFMGTLK 385          
BLAST of CX288779 vs. ExPASy Swiss-Prot
Match: RL3_KLULA (60S ribosomal protein L3 OS=Kluyveromyces lactis GN=RPL3 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.124e-26
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 2
Query:    5 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 271
            TEFDRT+K ITPMGGF HYG +N D++++KG   G +KRVVTLR+SL   TSR ALEE+ LK+IDT+SKFG GRFQT  EK  + G LK
Sbjct:  296 TEFDRTKKTITPMGGFVHYGAINNDFVILKGSIPGTRKRVVTLRKSLYTNTSRKALEEVTLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384          
BLAST of CX288779 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 118.242 bits (295), Expect = 1.917e-26
Identity = 55/89 (61.80%), Postives = 68/89 (76.40%), Query Frame = 2
Query:    5 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 271
            T FDRT+K ITPMGGF HYG +  D++++KGC  G +KR+VTLR+SL   TSR ALEE+ LK+IDT+SKFG GRFQT  EK  + G LK
Sbjct:  296 TSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
BLAST of CX288779 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.504e-26
Identity = 57/90 (63.33%), Postives = 70/90 (77.78%), Query Frame = 2
Query:    5 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA 274
            TEFD TEK I+PMGGFPHYG V  D++++KG  VG +KRVVTLR+SLL+Q    A EE+ +KF+DTSSK GHGRFQT+ EK  +YG  KA
Sbjct:  290 TEFDLTEKPISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVTLRKSLLRQR---AGEELVIKFVDTSSKIGHGRFQTSAEKKAFYGARKA 376          
BLAST of CX288779 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.243e-25
Identity = 56/89 (62.92%), Postives = 68/89 (76.40%), Query Frame = 2
Query:    5 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 271
            T FDRT+K I PMGGF HYG+VN D++++KG   G KKRVVTLR+SL   TSR A+EE+ LK+IDT+SKFG GRFQT  EK  + G LK
Sbjct:  296 TNFDRTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRKSLYTNTSRKAVEEVTLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
The following BLAST results are available for this feature:
BLAST of CX288779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL3_RAT2.264e-2762.9260S ribosomal protein L3 OS=Rattus norvegicus GN=R... [more]
RL3_MOUSE2.264e-2762.9260S ribosomal protein L3 OS=Mus musculus GN=Rpl3 P... [more]
RL3_BOVIN2.264e-2762.9260S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=... [more]
RL3_MACFA2.957e-2762.9260S ribosomal protein L3 OS=Macaca fascicularis GN... [more]
RL3_HUMAN2.957e-2762.9260S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P... [more]
RL3_ASHGO5.045e-2765.1760S ribosomal protein L3 OS=Ashbya gossypii GN=RPL... [more]
RL3_KLULA1.124e-2664.0460S ribosomal protein L3 OS=Kluyveromyces lactis G... [more]
RL3_YEAST1.917e-2661.8060S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]
RL3_ENCCU2.504e-2663.3360S ribosomal protein L3 OS=Encephalitozoon cunicu... [more]
RL3_CANGA1.243e-2562.9260S ribosomal protein L3 OS=Candida glabrata GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionC02004C10SK IF1 Citrus clementina cDNA clone C02004C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288779 ID=CX288779; Name=CX288779; organism=Citrus clementina; type=EST; length=487bp
CATGACTGAATTTGACAGGACGGAGAAGGATATCACCCCAATGGGAGGCT
TCCCCCACTATGGTGTAGTCAATGAAGATTACCTGCTGATCAAGGGCTGC
TGTGTTGGACCTAAGAAGCGTGTTGTGACGTTAAGGCAGTCCCTACTGAA
GCAGACGTCTAGGCTTGCATTGGAGGAGATTAAGCTCAAGTTCATTGACA
CATCCTCCAAGTTCGGCCATGGTCGGTTCCAGACAACGCAGGAGAAGGCC
AAGTACTATGGAAGGCTCAAGGCTTGATTTTGGCCAAGTTGAAGAAGAGA
TTGCCTTTGGTTTCAGGGTAGTTTTGAACATCTAAGATTTTTGGTCATTC
TAGTCTCTATTTTGAATTAATATGGCTATGGCTACACTGGCAGTTCTTGG
AAACTTCATTTGTGCATGGTTTCTTTTTTGCGCGTTAATACATCTTACGG
TATTTTTGGGCTTTAAAAAAAAAAAAAAAAAAAAAAA
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