CX288780

Overview
NameCX288780
Unique NameCX288780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length510
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG2_YEAST (Glycyl-tRNA synthetase 2 OS=Saccharomyces cerevisiae GN=GRS2 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.244e-26
Identity = 64/143 (44.76%), Postives = 86/143 (60.14%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDEAASVI 425
            +H R + P+VIEPSFG+GRIIYC+++H F  R      E    F FP  +APIK  V  +  N  +  + K IS  L+   I  KID + TSIGK+YAR DELG PF IT+D       +VT+RER+S  Q+R ++ +  S I
Sbjct:  455 QHIREYIPNVIEPSFGLGRIIYCIFDHCFQVR---VDSESRGFFSFPLQIAPIKVFVTTISNNDGFPAILKRISQALRKREIYFKIDDSNTSIGKKYARNDELGTPFGITIDFETIKDQTVTLRERNSMRQVRGTITDVISTI 594          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_ENCCU (Glycyl-tRNA synthetase OS=Encephalitozoon cuniculi GN=ECU10_1790 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.618e-26
Identity = 63/146 (43.15%), Postives = 86/146 (58.90%), Query Frame = 3
Query:   30 PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKW 455
            P VIEPSFGIGRI+Y L EHSFY R     ++   VFRF P +AP++C +  L+   ++ E    I   L   G+   ++    SIG++Y+  DELG+PF IT D        VTIRERDS  QIRV V++  S++     GQ++W
Sbjct:  438 PDVIEPSFGIGRILYALIEHSFYLR-----EDSRPVFRFKPAIAPVQCAIGYLIHFDEFNEHILNIKRFLTDNGLVVHVNERSCSIGRKYSSCDELGIPFFITFDPDFLKDRMVTIRERDSMQQIRVDVEKCPSIVLEYIRGQSRW 578          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_METM5 (Glycyl-tRNA synthetase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=glyS PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.287e-23
Identity = 61/137 (44.53%), Postives = 83/137 (60.58%), Query Frame = 3
Query:   30 PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDEAASVIK 428
            P VIEPS+GI RI YC+ EH+F        DE   V  F   V+PIK  VFPLV  +   E+A  +   L+  G+  + D +G +IG+RY R DE+G PF +T+D    + SSVTIRERDS++Q R+ ++E    IK
Sbjct:  442 PHVIEPSYGIDRITYCVMEHAF------KEDEDRTVMGFSNAVSPIKVGVFPLVNKEGMPEIAMDLKNKLRENGLIAEYDDSG-AIGRRYMRMDEVGTPFCVTIDGETLTDSSVTIRERDSREQFRIPINEVVPYIK 571          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_METJA (Glycyl-tRNA synthetase OS=Methanocaldococcus jannaschii GN=glyS PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.287e-23
Identity = 60/137 (43.80%), Postives = 83/137 (60.58%), Query Frame = 3
Query:   30 PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIK 428
            P VIEPS+GI RI YCL EHS+        +E        P +APIK  V PLV      ++AK I  +L+  GI  + D +G +IG+RY R DE+GVPF ITVD  +    +VT+RER++++Q+RV +DE    +K
Sbjct:  443 PHVIEPSYGIDRITYCLLEHSY------REEEDRVYLDLKPSIAPIKAYVLPLVNKDDMPKIAKEIEQMLRENGIIAEYDDSG-AIGRRYMRADEIGVPFCITVDGQTLEDRTVTVRERNTREQVRVKIDELVDYLK 572          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_METMP (Glycyl-tRNA synthetase OS=Methanococcus maripaludis GN=glyS PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.867e-23
Identity = 61/137 (44.53%), Postives = 82/137 (59.85%), Query Frame = 3
Query:   30 PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIK 428
            P VIEPS+GI RI YC+ EH+F        DE   V  F   V+PIK  VFPLV  +   E+A  +   L+  G+  + D +G +IG+RY R DE+G PF IT+D  +    SVTIRERDS++Q R+ ++E    IK
Sbjct:  442 PHVIEPSYGIDRITYCVMEHAF------KEDEDRTVMGFSNAVSPIKVGVFPLVNKEGMPEIAMDLKNKLRENGLIAEYDDSG-AIGRRYMRMDEVGTPFCITIDGETLKDRSVTIRERDSREQFRIPINEVVPYIK 571          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_METM7 (Glycyl-tRNA synthetase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=glyS PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.867e-23
Identity = 60/137 (43.80%), Postives = 83/137 (60.58%), Query Frame = 3
Query:   30 PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIK 428
            P VIEPS+GI RI YC+ EH+F        +E   V  F   V+PIK  VFPLV  +   E+A  +   L+  G+  + D +G +IG+RY R DE+G PF +T+D  +    SVTIRERDS++Q R+ ++E  S IK
Sbjct:  442 PHVIEPSYGIDRITYCVMEHAF------KEEEDRTVMGFSNAVSPIKVGVFPLVNKEGMPEIAMDLKNKLRENGLIAEYDDSG-AIGRRYMRMDEVGTPFCVTIDGETLTDRSVTIRERDSREQFRIPINEVVSYIK 571          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_METTP (Glycyl-tRNA synthetase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=glyS PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.890e-23
Identity = 58/142 (40.85%), Postives = 84/142 (59.15%), Query Frame = 3
Query:   30 PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDEAASVIKAVTDG 443
            P VIEPSFGI RI+Y + EHS++  P +  DE   V RF P ++PI   + PL+   +  E A+ I    +  G+  + D +G SIG+RY R DE+G P+ ITVD       +VT+R+RD+  QIR+  D A  +I+ +  G
Sbjct:  426 PHVIEPSFGIDRILYTVLEHSYHEEPVE--DEMRVVLRFLPGISPIDVAILPLMDKDELVEPARRIFDEFRRCGMLAEFDTSG-SIGRRYRRNDEIGTPYCITVDYQTLEDGTVTVRDRDTMQQIRIEADRAVDIIRDLMSG 564          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_METM6 (Glycyl-tRNA synthetase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=glyS PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.387e-23
Identity = 61/137 (44.53%), Postives = 82/137 (59.85%), Query Frame = 3
Query:   30 PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDS----TSSVTIRERDSKDQIRVSVDEAASVIK 428
            P VIEPS+GI RI YC+ EH+F        +E   V  F   V+PIK  VFPLV  +   E+A  +   L+  G+  + D +G +IG+RY R DE+G PF IT+D      +SVTIRERDS+ Q R+ ++E  S IK
Sbjct:  442 PHVIEPSYGIDRITYCVMEHAF------KEEEDRTVMGFSNAVSPIKVGVFPLVNKEGMPEIAMDLKNKLRENGLIAEYDDSG-AIGRRYMRMDEVGTPFCITIDGETLVDNSVTIRERDSRAQFRIPINEVVSYIK 571          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_METTH (Glycyl-tRNA synthetase OS=Methanobacterium thermoautotrophicum GN=glyS PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.089e-22
Identity = 61/137 (44.53%), Postives = 80/137 (58.39%), Query Frame = 3
Query:   30 PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDEAASVIK 428
            P VIEPSFGI RIIY L  HS         D +   FR PP VAP++ TV PLV  ++    A  I   L+ +G   + D +GT IG+RYAR DE+GVPFA+TVD       +VT+R RD   Q+RV ++E    ++
Sbjct:  432 PHVIEPSFGIDRIIYTLLLHSL------VDDGERTYFRLPPHVAPVEVTVLPLVNREEMVMTALEIERNLRRSGFIAEFDSSGT-IGRRYARADEIGVPFAVTVDHETLEDGTVTLRNRDDCSQVRVKIEELVPTLE 561          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_METVS (Glycyl-tRNA synthetase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=glyS PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.061e-22
Identity = 58/137 (42.34%), Postives = 84/137 (61.31%), Query Frame = 3
Query:   30 PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDEAASVIK 428
            P VIEPS+GI RI YC+ EH+F     K  D++  +  F   V+P+K  VFPLV  +  +E+A+ +    +  GI  + D +G +IG+RY R DE+G PF +TVD      ++VTIRERDS++Q R+ +D     IK
Sbjct:  442 PHVIEPSYGIDRITYCVIEHAF-----KEEDDR-TLLAFVNTVSPVKVGVFPLVNKEGMDEIAENLKNKFRKNGIIAEYDDSG-AIGRRYMRMDEIGTPFCVTVDGETLKDNTVTIRERDSREQFRIPLDGVVDYIK 571          
The following BLAST results are available for this feature:
BLAST of CX288780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
SYG2_YEAST1.244e-2644.76Glycyl-tRNA synthetase 2 OS=Saccharomyces cerevisi... [more]
SYG_ENCCU3.618e-2643.15Glycyl-tRNA synthetase OS=Encephalitozoon cuniculi... [more]
SYG_METM51.287e-2344.53Glycyl-tRNA synthetase OS=Methanococcus maripaludi... [more]
SYG_METJA1.287e-2343.80Glycyl-tRNA synthetase OS=Methanocaldococcus janna... [more]
SYG_METMP2.867e-2344.53Glycyl-tRNA synthetase OS=Methanococcus maripaludi... [more]
SYG_METM72.867e-2343.80Glycyl-tRNA synthetase OS=Methanococcus maripaludi... [more]
SYG_METTP4.890e-2340.85Glycyl-tRNA synthetase OS=Methanosaeta thermophila... [more]
SYG_METM66.387e-2344.53Glycyl-tRNA synthetase OS=Methanococcus maripaludi... [more]
SYG_METTH1.089e-2244.53Glycyl-tRNA synthetase OS=Methanobacterium thermoa... [more]
SYG_METVS7.061e-2242.34Glycyl-tRNA synthetase OS=Methanococcus vannielii ... [more]

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Properties
Property NameValue
Genbank descriptionC02004C11SK IF1 Citrus clementina cDNA clone C02004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288780 ID=CX288780; Name=CX288780; organism=Citrus clementina; type=EST; length=510bp
AAAAGAAAGAACACCAGAGAGTTTTCACCCCATCAGTTATAGAGCCATCT
TTTGGCATTGGTCGAATTATATACTGCCTCTATGAGCACTCTTTCTATAC
AAGGCCAAGTAAAGCTGGGGATGAACAGTTAAATGTTTTCCGTTTCCCCC
CTCTTGTGGCACCTATTAAGTGCACTGTTTTCCCACTGGTTCAGAATCAA
CAGTATGAGGAGGTTGCCAAAGTCATTTCCACGTTATTAAAAGTTGCTGG
AATCTCTCACAAGATTGACATAACAGGCACCTCCATAGGGAAACGGTATG
CAAGAACAGATGAACTTGGTGTACCGTTTGCTATAACTGTTGATTCAACA
TCCTCGGTGACAATCCGAGAGCGAGATAGCAAGGATCAAATCCGTGTCAG
CGTGGATGAGGCAGCATCAGTTATAAAGGCTGTAACCGATGGACAAACGA
AGTGGGAAGATGTGTGGTCAAGTTACCCACATCACTCCTCTGAGTCAGCG
GATGCCTAAA
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