CX288780

Overview
NameCX288780
Unique NameCX288780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length510
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_UREPA (Glycyl-tRNA synthetase OS=Ureaplasma parvum GN=glyQS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.294e-11
Identity = 49/142 (34.51%), Postives = 75/142 (52.82%), Query Frame = 3
Query:    6 KEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS-------SVTIRERDSKDQIRVSVDE 410
            +E ++ + P VIEPS G+ R++Y +   + +     A DE   +      +AP K  V PLV N+  E+   V + +L +  IS   D +G SIGKRY R D +G  + IT+D  S       + TIRER++  Q R+ + E
Sbjct:  317 EETKQKYIPHVIEPSVGVERLLYAILTEATFIE-KLANDEDRILMNLKYDLAPYKIAVMPLV-NKLKEKAEAVYNKILDL-NISVTFDNSG-SIGKRYRRQDAIGTIYCITIDYDSFGDEHDPTFTIRERNTMAQKRIKLSE 454          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_UREP2 (Glycyl-tRNA synthetase OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=glyQS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.294e-11
Identity = 49/142 (34.51%), Postives = 75/142 (52.82%), Query Frame = 3
Query:    6 KEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS-------SVTIRERDSKDQIRVSVDE 410
            +E ++ + P VIEPS G+ R++Y +   + +     A DE   +      +AP K  V PLV N+  E+   V + +L +  IS   D +G SIGKRY R D +G  + IT+D  S       + TIRER++  Q R+ + E
Sbjct:  317 EETKQKYIPHVIEPSVGVERLLYAILTEATFIE-KLANDEDRILMNLKYDLAPYKIAVMPLV-NKLKEKAEAVYNKILDL-NISVTFDNSG-SIGKRYRRQDAIGTIYCITIDYDSFGDEHDPTFTIRERNTMAQKRIKLSE 454          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_UREU1 (Glycyl-tRNA synthetase OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=glyQS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.324e-11
Identity = 46/136 (33.82%), Postives = 73/136 (53.68%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS-------SVTIRERDSKDQIRVSVDE 410
            + P VIEPS G+ R++Y +   + +    +  DE++ +      +AP K  V PLV N+  ++  ++   +L +  IS   D +G SIGKRY R D +G  + +T+D  S       S TIRER+S  Q R+ + E
Sbjct:  323 YVPHVIEPSVGVERLLYAILTEATFIEKLENDDERI-LMDLKYDLAPYKIAVMPLV-NKLKDKAEEIYGKILDL-NISATFDNSG-SIGKRYRRQDAIGTIYCLTIDFDSLDDQQDPSFTIRERNSMAQKRIKLSE 454          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_GEOTN (Glycyl-tRNA synthetase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=glyQS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.324e-11
Identity = 49/145 (33.79%), Postives = 68/145 (46.90%), Query Frame = 3
Query:    6 KEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQN------QQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDE 410
            +E    + P  IEPS G  R+       ++     + G  +  V    P +AP K  V PL +       + YEE+AK               D TG SIGKRY R DE+G PF IT D  S     VT+R+RD+ +Q+R+ + E
Sbjct:  322 QETNERYIPYCIEPSLGADRVTLAFMIDAYDEEELEDGTTR-TVMHLHPALAPYKAAVLPLSKKLGDGARRIYEELAKHFMV---------DYDETG-SIGKRYRRQDEIGTPFCITYDFESEQDGQVTVRDRDTMEQVRLPIGE 455          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_GEOKA (Glycyl-tRNA synthetase OS=Geobacillus kaustophilus GN=glyQS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.324e-11
Identity = 46/145 (31.72%), Postives = 72/145 (49.66%), Query Frame = 3
Query:    6 KEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIK 428
            +E    + P  IEPS G  R+       ++     + G  +  V    P +AP K  V PL   +  +   ++   L+K   + +  D TG SIGKRY R DE+G PF IT D  S     VT+R+RD+ +Q+R+ + E  + ++
Sbjct:  316 QETNERYIPYCIEPSLGADRVTLAFMIDAYDEEELEDGTTR-TVMHLHPALAPYKAAVLPL-SKKLADGAHRIYEELVKHFMVDY--DETG-SIGKRYRRQDEIGTPFCITYDFESEQDGQVTVRDRDTMEQVRLPIGELKAFLE 455          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_ALKMQ (Glycyl-tRNA synthetase OS=Alkaliphilus metalliredigens (strain QYMF) GN=glyQS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.324e-11
Identity = 45/133 (33.83%), Postives = 68/133 (51.13%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDE 410
            + P  IEPS G  R+       ++        D ++ V +  P +AP K  V PL +  + E+  ++   L     I +  D  G SIGKRY R DE+G P+ IT D      + VT+R+RD+ +Q RV++DE
Sbjct:  324 YVPYCIEPSLGADRVTLAFLVDAYEEEQIDEKDSRI-VLKLHPALAPFKAAVLPLTKKLK-EQSLELFEKLSDKFMIDY--DDAG-SIGKRYRRHDEIGTPYCITYDFDTLEDNCVTVRDRDTMEQQRVAIDE 451          
The following BLAST results are available for this feature:
BLAST of CX288780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
SYG_UREPA4.294e-1134.51Glycyl-tRNA synthetase OS=Ureaplasma parvum GN=gly... [more]
SYG_UREP24.294e-1134.51Glycyl-tRNA synthetase OS=Ureaplasma parvum serova... [more]
SYG_UREU17.324e-1133.82Glycyl-tRNA synthetase OS=Ureaplasma urealyticum s... [more]
SYG_GEOTN7.324e-1133.79Glycyl-tRNA synthetase OS=Geobacillus thermodenitr... [more]
SYG_GEOKA7.324e-1131.72Glycyl-tRNA synthetase OS=Geobacillus kaustophilus... [more]
SYG_ALKMQ7.324e-1133.83Glycyl-tRNA synthetase OS=Alkaliphilus metalliredi... [more]

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Properties
Property NameValue
Genbank descriptionC02004C11SK IF1 Citrus clementina cDNA clone C02004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288780 ID=CX288780; Name=CX288780; organism=Citrus clementina; type=EST; length=510bp
AAAAGAAAGAACACCAGAGAGTTTTCACCCCATCAGTTATAGAGCCATCT
TTTGGCATTGGTCGAATTATATACTGCCTCTATGAGCACTCTTTCTATAC
AAGGCCAAGTAAAGCTGGGGATGAACAGTTAAATGTTTTCCGTTTCCCCC
CTCTTGTGGCACCTATTAAGTGCACTGTTTTCCCACTGGTTCAGAATCAA
CAGTATGAGGAGGTTGCCAAAGTCATTTCCACGTTATTAAAAGTTGCTGG
AATCTCTCACAAGATTGACATAACAGGCACCTCCATAGGGAAACGGTATG
CAAGAACAGATGAACTTGGTGTACCGTTTGCTATAACTGTTGATTCAACA
TCCTCGGTGACAATCCGAGAGCGAGATAGCAAGGATCAAATCCGTGTCAG
CGTGGATGAGGCAGCATCAGTTATAAAGGCTGTAACCGATGGACAAACGA
AGTGGGAAGATGTGTGGTCAAGTTACCCACATCACTCCTCTGAGTCAGCG
GATGCCTAAA
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