CX288780

Overview
NameCX288780
Unique NameCX288780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length510
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_ARCFU (Glycyl-tRNA synthetase OS=Archaeoglobus fulgidus GN=glyS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.632e-20
Identity = 56/137 (40.88%), Postives = 78/137 (56.93%), Query Frame = 3
Query:   30 PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDEAASVIK 428
            P VIEPSFG+ RI Y + EH+F         E+  V R    V+PI+  V PL+  + +E     I  +L+  GI    D +G SIG+RY R DE+G PF +TVD       +VTIR+RD+  Q+RV + E  S++K
Sbjct:  418 PHVIEPSFGLDRITYSVLEHAF--DKDVVDGEERRVLRLKRWVSPIEVAVLPLLSREPFESKGMEIVQMLREEGIFTDYDDSG-SIGRRYRRFDEIGTPFCVTVDHQTFEDETVTIRDRDTTAQVRVKLGELPSILK 551          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_AERPE (Glycyl-tRNA synthetase OS=Aeropyrum pernix GN=glyS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.246e-18
Identity = 56/159 (35.22%), Postives = 88/159 (55.35%), Query Frame = 3
Query:    3 KKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQN-QQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKWEDV 464
            +K   R F P V+EPSFG  R +Y   E+++     +       V  FP  +AP++  V PLV+N ++  E A+++   L  AG +   D +G SIG+RYAR DE+GVP A+T+D       +VT+R+RD+  Q+R+  DE    ++       + ED+
Sbjct:  426 EKVSGRRFVPHVVEPSFGTDRNVYVALEYAYREVEGRV------VLAFPRDIAPVQAVVLPLVENDEKLVERARMVYETLVEAGFTVYYDDSG-SIGRRYARADEIGVPAAVTIDYQTLEDGTVTLRDRDTWRQVRIGADEVVDKLRRFIYDGARLEDL 577          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_MESFL (Glycyl-tRNA synthetase OS=Mesoplasma florum GN=glyQS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.055e-17
Identity = 53/138 (38.41%), Postives = 84/138 (60.87%), Query Frame = 3
Query:   30 PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDEAASVIKA 431
            P VIEPS G+ R++  +   +++      G+ ++ V + P  +AP +  V PL Q QQ ++   + S LL    +++  D TG ++GKRY R D +G PF ITVD     T+SVT+RERDS +Q+R+++DE  + +KA
Sbjct:  317 PHVIEPSVGVERMMLAILWQAYHEEDLGEGNSRI-VMKLPYNLAPYQIAVMPL-QKQQNDQAQALYSNLLNNFDVTY--DETG-NVGKRYRRQDAIGTPFVITVDFDTPETNSVTVRERDSMEQVRINLDELEAYLKA 449          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_THEGJ (Glycyl-tRNA synthetase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=glyS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.800e-17
Identity = 53/143 (37.06%), Postives = 81/143 (56.64%), Query Frame = 3
Query:   30 PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDST----SSVTIRERDSKDQIRVSVDEAASVIKAVTDGQ 446
            P V+EPSFGI R  Y L E+S         +E     +    +API+  V PLV  +  + +A  I   L+ AG     D   T IG+RY R DE+G P+ +T+D+     S+VTIR+RD+++Q+RVS++E  S ++ +  G+
Sbjct:  435 PHVLEPSFGIDRPFYLLLENSLVI------EEDRTYLKLKKDMAPIEVAVLPLVAKEPLKSIAYEIFRKLQKAGFIVVYDEKDT-IGRRYLRYDEIGTPYCVTIDNQTPEDSTVTIRDRDTREQVRVSIEELPSKLRELIFGE 570          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_THET8 (Glycyl-tRNA synthetase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=glyQS PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 4.010e-17
Identity = 54/149 (36.24%), Postives = 80/149 (53.69%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQ-QYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS-------------SVTIRERDSKDQIRVSVDEAASVIK 428
            F P VIEPS G+ R +  L   +F       G+E++ V +  P +APIK  V PLV+N+ +  E AK +   L   G+   +     +IGK Y R DE+G PFA+TVD  +             +VT+R+RD+ +QIR+ VDE    ++
Sbjct:  354 FVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERI-VLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDTGNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHVDELEGFLR 501          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_THET2 (Glycyl-tRNA synthetase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=glyQS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.010e-17
Identity = 54/149 (36.24%), Postives = 80/149 (53.69%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQ-QYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS-------------SVTIRERDSKDQIRVSVDEAASVIK 428
            F P VIEPS G+ R +  L   +F       G+E++ V +  P +APIK  V PLV+N+ +  E AK +   L   G+   +     +IGK Y R DE+G PFA+TVD  +             +VT+R+RD+ +QIR+ VDE    ++
Sbjct:  354 FVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERI-VLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDTGNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHVDELEGFLR 501          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_LEPIC (Glycyl-tRNA synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=glyQS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.839e-17
Identity = 48/134 (35.82%), Postives = 77/134 (57.46%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAK-VISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDE 410
            + P V+EP+ G+ R+   +   ++       G+ +  V RF P +AP+K  VFPL++     E ++ + + L K+  I +     G +IGKRY R DE+G PF ITVD      ++VT+RERDS  Q R++V++
Sbjct:  326 YVPFVVEPALGVNRLFLAVVTDAYEEEKLPDGETR-TVLRFSPKIAPVKAAVFPLMKKDGLPEKSREIFADLSKLGNIEYD---DGGAIGKRYRRQDEIGTPFCITVDYDTLKDNTVTVRERDSMSQERIAVNQ 455          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_THESM (Glycyl-tRNA synthetase OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=glyS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.933e-17
Identity = 54/152 (35.53%), Postives = 82/152 (53.95%), Query Frame = 3
Query:    3 KKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVF-RFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDS----TSSVTIRERDSKDQIRVSVDEAASVIKAVTDG 443
            +K H     P V+EPSFGI R  Y L E+S         DE   V+ +    +API+  V PLV  +    +A  I   L+  G     D   T +G+RYAR DE+G P+ +T+D+     ++VTIR+RD+++QIRV ++E    ++ +  G
Sbjct:  426 EKVHGEKLVPHVLEPSFGIDRPFYLLLENSIVM------DEDSRVYLKIKKDMAPIEVAVLPLVAKEPLTSIAYEIFRTLQKEGFIVVYDEKDT-VGRRYARYDEIGTPYCVTIDNQTPEDNTVTIRDRDTREQIRVKIEELPEKLRELIFG 570          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_LEPIN (Glycyl-tRNA synthetase OS=Leptospira interrogans GN=glyQS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.167e-16
Identity = 47/134 (35.07%), Postives = 76/134 (56.72%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAK-VISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDE 410
            + P V+EP+ G+ R+   +   ++       G+ +  V RF P +AP+K  +FPL++     E ++ + + L K+  I +     G +IGKRY R DE+G PF ITVD       +VT+RERDS  Q R++V++
Sbjct:  326 YVPFVVEPALGVNRLFLAVVTDAYEEEKLPDGETR-TVLRFSPKIAPVKAAIFPLMKKDGLPEKSREIFADLSKLGNIEYD---DGGAIGKRYRRQDEIGTPFCITVDYDTLKDDTVTVRERDSMSQERIAVNQ 455          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_LEPBL (Glycyl-tRNA synthetase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=glyQS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.790e-16
Identity = 51/132 (38.64%), Postives = 76/132 (57.58%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQY-EEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSV 404
            + P V+EP+ G+ R+   +   ++       G+ +  V RF P +AP+K  VFPL++     E+  ++ + L K+  I +  D +G +IGKRY R DE+G PF ITVD       +VT+RERDS  Q RVSV
Sbjct:  326 YVPFVVEPALGVNRLFLAVVTDAYQEEKLPDGEIR-TVLRFSPKIAPVKVAVFPLMKKDGLLEKSREIFADLSKLGNIEY--DDSG-AIGKRYRRQDEIGTPFCITVDYDTLKDDTVTVRERDSMAQERVSV 453          
The following BLAST results are available for this feature:
BLAST of CX288780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
SYG_ARCFU8.632e-2040.88Glycyl-tRNA synthetase OS=Archaeoglobus fulgidus G... [more]
SYG_AERPE1.246e-1835.22Glycyl-tRNA synthetase OS=Aeropyrum pernix GN=glyS... [more]
SYG_MESFL1.055e-1738.41Glycyl-tRNA synthetase OS=Mesoplasma florum GN=gly... [more]
SYG_THEGJ1.800e-1737.06Glycyl-tRNA synthetase OS=Thermococcus gammatolera... [more]
SYG_THET84.010e-1736.24Glycyl-tRNA synthetase OS=Thermus thermophilus (st... [more]
SYG_THET24.010e-1736.24Glycyl-tRNA synthetase OS=Thermus thermophilus (st... [more]
SYG_LEPIC6.839e-1735.82Glycyl-tRNA synthetase OS=Leptospira interrogans s... [more]
SYG_THESM8.933e-1735.53Glycyl-tRNA synthetase OS=Thermococcus sibiricus (... [more]
SYG_LEPIN1.167e-1635.07Glycyl-tRNA synthetase OS=Leptospira interrogans G... [more]
SYG_LEPBL5.790e-1638.64Glycyl-tRNA synthetase OS=Leptospira borgpeterseni... [more]

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Properties
Property NameValue
Genbank descriptionC02004C11SK IF1 Citrus clementina cDNA clone C02004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288780 ID=CX288780; Name=CX288780; organism=Citrus clementina; type=EST; length=510bp
AAAAGAAAGAACACCAGAGAGTTTTCACCCCATCAGTTATAGAGCCATCT
TTTGGCATTGGTCGAATTATATACTGCCTCTATGAGCACTCTTTCTATAC
AAGGCCAAGTAAAGCTGGGGATGAACAGTTAAATGTTTTCCGTTTCCCCC
CTCTTGTGGCACCTATTAAGTGCACTGTTTTCCCACTGGTTCAGAATCAA
CAGTATGAGGAGGTTGCCAAAGTCATTTCCACGTTATTAAAAGTTGCTGG
AATCTCTCACAAGATTGACATAACAGGCACCTCCATAGGGAAACGGTATG
CAAGAACAGATGAACTTGGTGTACCGTTTGCTATAACTGTTGATTCAACA
TCCTCGGTGACAATCCGAGAGCGAGATAGCAAGGATCAAATCCGTGTCAG
CGTGGATGAGGCAGCATCAGTTATAAAGGCTGTAACCGATGGACAAACGA
AGTGGGAAGATGTGTGGTCAAGTTACCCACATCACTCCTCTGAGTCAGCG
GATGCCTAAA
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