CX288780

Overview
NameCX288780
Unique NameCX288780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length510
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_LEPBJ (Glycyl-tRNA synthetase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=glyQS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.790e-16
Identity = 51/132 (38.64%), Postives = 76/132 (57.58%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQY-EEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSV 404
            + P V+EP+ G+ R+   +   ++       G+ +  V RF P +AP+K  VFPL++     E+  ++ + L K+  I +  D +G +IGKRY R DE+G PF ITVD       +VT+RERDS  Q RVSV
Sbjct:  326 YVPFVVEPALGVNRLFLAVVTDAYQEEKLPDGEIR-TVLRFSPKIAPVKVAVFPLMKKDGLLEKSREIFADLSKLGNIEY--DDSG-AIGKRYRRQDEIGTPFCITVDYDTLKDDTVTVRERDSMAQERVSV 453          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_CLOAB (Glycyl-tRNA synthetase OS=Clostridium acetobutylicum GN=glyQS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.790e-16
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDE 410
            + P VIEPS G  R+       ++     + GD+++ V  F P +APIK  V PL +    E+   V S +     I +  D TG SIGKRY R DE+G P+ ITVD       +VTIR+RDS  Q+RV ++E
Sbjct:  325 YVPYVIEPSLGADRVALAFLIDAYDEEELEGGDQRI-VLHFHPQIAPIKAAVLPLSKKLS-EKALDVYSKISSKFNIEY--DETG-SIGKRYRRQDEIGTPYCITVDFDTLEDEAVTIRDRDSMSQVRVKIEE 452          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_CLOTE (Glycyl-tRNA synthetase OS=Clostridium tetani GN=glyQS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.562e-16
Identity = 52/143 (36.36%), Postives = 75/143 (52.45%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDEAASVI 425
            E    + P  IEPS G  R+       ++       GD +  V R  P +AP K  + PL +  + ++  +V S L K   + +  D  GT IGKRY R DE+G P+ IT+D      ++VTIR+RDS DQIR+++DE    I
Sbjct:  320 ETNEKYLPYCIEPSLGADRVALAFLVDAYDEEELDGGDSR-TVLRLHPALAPFKAAILPLTKKLK-DKSLEVYSMLSKYFNVDY--DEAGT-IGKRYRREDEIGTPYCITIDYDTLEDNTVTIRDRDSMDQIRINIDELVKYI 457          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_STRAW (Glycyl-tRNA synthetase OS=Streptomyces avermitilis GN=glyQS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.876e-16
Identity = 53/143 (37.06%), Postives = 81/143 (56.64%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYT--RPSKAGD-EQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDEAASVIKA 431
            +TP VIEP+ G+GR +      ++     P+  G  E+  V R  P ++P+K  V PL +N +    AK ++T L+    + + D  G +IG+RY R DE+G PF +TVD      ++VT+RERDS  Q RVS+D+    + A
Sbjct:  315 WTPYVIEPAAGVGRAMLAFLLDAYVEDEAPNAKGKMEKRTVLRLDPRLSPVKVAVLPLSRNPELSPKAKGLATALRQHW-NIEFDDAG-AIGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRERDSMKQERVSLDQIEGYLAA 455          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_PYRKO (Glycyl-tRNA synthetase OS=Pyrococcus kodakaraensis GN=glyS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.876e-16
Identity = 50/131 (38.17%), Postives = 73/131 (55.73%), Query Frame = 3
Query:   30 PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDE 410
            P V+EPSFGI R  Y L E+S         +E     R    +API+  V PLV  +  + +A  I   L+  G     D   T +G+RY R DE+G P+ +TVD+ +    +VTIR+RD+++QIRV ++E
Sbjct:  435 PHVLEPSFGIDRPFYLLLENSLVI------EEDRTYLRIKKDMAPIEVAVLPLVAKEPLKSIAYDIFRTLQKEGFIAVYDEKDT-VGRRYMRYDEIGTPYCVTVDNQTPEDGTVTIRDRDTREQIRVKIEE 558          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_CLOTH (Glycyl-tRNA synthetase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=glyQS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.876e-16
Identity = 53/145 (36.55%), Postives = 76/145 (52.41%), Query Frame = 3
Query:   18 RVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVTD 440
            R + P  IEPS G  R+       ++     + GD ++ V RF P +AP+K  V PL   +  +E  K+   L+K     +  D TG SIGKRY R DE+G P+ +T D  S     VT+R+RDS  Q+R+ +DE  S  +   D
Sbjct:  322 RKYIPYCIEPSLGADRVALVFLCDAYDEEEVEEGDIRV-VLRFHPAIAPVKIAVLPL-SKKLGDEAYKIYEMLIKKYNCEY--DETG-SIGKRYRRQDEIGTPYCVTFDFDSLNDRCVTVRDRDSMQQVRIKIDELLSYFEGKFD 461          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_PYRHO (Glycyl-tRNA synthetase OS=Pyrococcus horikoshii GN=glyS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.290e-15
Identity = 54/143 (37.76%), Postives = 78/143 (54.55%), Query Frame = 3
Query:   30 PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVF-RFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVTDG 443
            P V+EPSFGI R  Y L E+S         DE   ++ +    +API+  V PLV  +    +A  I   L+  G     D    SIGKRY R DE+G P+ +TVD+ +    +VTIR+RD+++QIRV ++E    +K +  G
Sbjct:  435 PHVLEPSFGIDRPFYLLLENSLTV------DEDGRIYLKIKKDMAPIEVAVLPLVAKEPLTTIAYEIYRTLQKEGFIVVYD-EKDSIGKRYMRYDEIGTPYCVTVDNQTPEDGTVTIRDRDTREQIRVKIEELPRKLKELIFG 570          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_PYRFU (Glycyl-tRNA synthetase OS=Pyrococcus furiosus GN=glyS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.290e-15
Identity = 55/143 (38.46%), Postives = 78/143 (54.55%), Query Frame = 3
Query:   30 PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVF-RFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVTDG 443
            P V+EPSFGI R  Y L E+S         DE   V+ +    +API+  V PLV  +    +A  I   L+  G     D    SIGKRY R DE+G P+ +TVD+ +    +VTIR+RD+++QIRV ++E    +K +  G
Sbjct:  433 PHVLEPSFGIDRPFYLLLENSLTV------DEDGRVYLKIKKDMAPIEVAVLPLVAKEPLTTIAYEIYRNLQKEGFIVVYD-EKDSIGKRYMRYDEIGTPYCVTVDNQTPEDGTVTIRDRDTREQIRVKIEEVPRKLKELIFG 568          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_DEIGD (Glycyl-tRNA synthetase OS=Deinococcus geothermalis (strain DSM 11300) GN=glyQS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.290e-15
Identity = 51/153 (33.33%), Postives = 80/153 (52.29%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQN-QQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD-----------STSSVTIRERDSKDQIRVSVDEAASVIKA 431
            E  +   P VIEPS G+ R +  +   ++     + G E++ V +  P +APIK  V PL +N ++   VAK I   L+  G+   +     +IGK Y R DE+G P+ +TVD            T +VT+R+RD+  Q RV + E A+ ++A
Sbjct:  350 ETNKPVVPFVIEPSAGVDRAMLAVLAEAYTKETLENGSERI-VLKLKPHLAPIKVAVIPLARNREEITSVAKAIKAKLQSLGLGRVLYEDSGNIGKAYRRHDEVGTPYCVTVDFETVGKGEDPALTDTVTVRDRDTLGQERVRISELANWLQA 501          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_DEIRA (Glycyl-tRNA synthetase OS=Deinococcus radiodurans GN=glyQS PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.685e-15
Identity = 52/155 (33.55%), Postives = 81/155 (52.26%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQN-QQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS-------------SVTIRERDSKDQIRVSVDEAASVIKA 431
            E  +   P VIEPS G+ R +  +   +F     + G+E++ V +  P +APIK  V PL +N ++  +VAK I   L+  G+   +     +IGK Y R DE+G P+ +TVD  +             +VT+R+RD+  Q RV + E A  I+A
Sbjct:  350 ETNKPVVPFVIEPSAGVDRAMLAVLSEAFTKETLENGNERI-VLKLKPHLAPIKVAVIPLARNREEITDVAKAIKAELQGLGLGRVLYEDSGNIGKAYRRHDEVGTPYCVTVDFDTVGLGENTDESLKDTVTVRDRDTLAQERVKISELAGWIQA 503          
The following BLAST results are available for this feature:
BLAST of CX288780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
SYG_LEPBJ5.790e-1638.64Glycyl-tRNA synthetase OS=Leptospira borgpeterseni... [more]
SYG_CLOAB5.790e-1639.85Glycyl-tRNA synthetase OS=Clostridium acetobutylic... [more]
SYG_CLOTE7.562e-1636.36Glycyl-tRNA synthetase OS=Clostridium tetani GN=gl... [more]
SYG_STRAW9.876e-1637.06Glycyl-tRNA synthetase OS=Streptomyces avermitilis... [more]
SYG_PYRKO9.876e-1638.17Glycyl-tRNA synthetase OS=Pyrococcus kodakaraensis... [more]
SYG_CLOTH9.876e-1636.55Glycyl-tRNA synthetase OS=Clostridium thermocellum... [more]
SYG_PYRHO1.290e-1537.76Glycyl-tRNA synthetase OS=Pyrococcus horikoshii GN... [more]
SYG_PYRFU1.290e-1538.46Glycyl-tRNA synthetase OS=Pyrococcus furiosus GN=g... [more]
SYG_DEIGD1.290e-1533.33Glycyl-tRNA synthetase OS=Deinococcus geothermalis... [more]
SYG_DEIRA1.685e-1533.55Glycyl-tRNA synthetase OS=Deinococcus radiodurans ... [more]

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Properties
Property NameValue
Genbank descriptionC02004C11SK IF1 Citrus clementina cDNA clone C02004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288780 ID=CX288780; Name=CX288780; organism=Citrus clementina; type=EST; length=510bp
AAAAGAAAGAACACCAGAGAGTTTTCACCCCATCAGTTATAGAGCCATCT
TTTGGCATTGGTCGAATTATATACTGCCTCTATGAGCACTCTTTCTATAC
AAGGCCAAGTAAAGCTGGGGATGAACAGTTAAATGTTTTCCGTTTCCCCC
CTCTTGTGGCACCTATTAAGTGCACTGTTTTCCCACTGGTTCAGAATCAA
CAGTATGAGGAGGTTGCCAAAGTCATTTCCACGTTATTAAAAGTTGCTGG
AATCTCTCACAAGATTGACATAACAGGCACCTCCATAGGGAAACGGTATG
CAAGAACAGATGAACTTGGTGTACCGTTTGCTATAACTGTTGATTCAACA
TCCTCGGTGACAATCCGAGAGCGAGATAGCAAGGATCAAATCCGTGTCAG
CGTGGATGAGGCAGCATCAGTTATAAAGGCTGTAACCGATGGACAAACGA
AGTGGGAAGATGTGTGGTCAAGTTACCCACATCACTCCTCTGAGTCAGCG
GATGCCTAAA
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