CX288780

Overview
NameCX288780
Unique NameCX288780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length510
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_STRCO (Glycyl-tRNA synthetase OS=Streptomyces coelicolor GN=glyQS PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.200e-15
Identity = 52/142 (36.62%), Postives = 81/142 (57.04%), Query Frame = 3
Query:    6 KEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYT--RPSKAGD-EQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDE 410
            +E Q  +TP VIEP+ G+GR +      ++     P+  G  E+  V R  P ++P+K  V PL +N +    AK ++  L+    + + D  G +IG+RY R DE+G PF +TVD      ++VT+RERD+  Q RVS+D+
Sbjct:  309 QEAQERWTPYVIEPAAGVGRAMLAFLLDAYIEDEAPNAKGKLEKRTVLRLDPRLSPVKVAVLPLSRNPELSPKAKGLAQALR-QNWNIEFDDAG-AIGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRERDTMKQERVSLDQ 448          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_RHOBA (Glycyl-tRNA synthetase OS=Rhodopirellula baltica GN=glyQS PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.874e-15
Identity = 56/143 (39.16%), Postives = 78/143 (54.55%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGR--IIYCLYEHSFYTRPSKAGDEQLN-VFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKA 431
            F P VIEPS G  R  + +    ++    P + G  Q   V +  P +APIK  VFPLV+     EVA+ I   LK    +   D  G ++G+RY R DE G P+ ITVD  S    +VTIR+RD+ +Q RV +D+  S I++
Sbjct:  390 FVPHVIEPSAGADRAALAFLCEAYTEDEAPDENGKMQTRTVMKLDPRLAPIKAAVFPLVKKDGMPEVAQEIYGALK-EHYNVFYDAKG-AVGRRYRRQDEAGTPYCITVDGDSLTDKTVTIRDRDTLEQTRVKIDDVVSEIQS 530          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_BIFLO (Glycyl-tRNA synthetase OS=Bifidobacterium longum GN=glyQS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.402e-15
Identity = 50/143 (34.97%), Postives = 78/143 (54.55%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPS---KAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDEAASVIKA 431
            + P VIEP+ G+ R + C    ++    +   K G ++  V R  P +AP+K  V PL +  + + VA+ ++  L+        D +G +IG+RY R DE+G P  ITVD       +VTIRERD+  Q RV++D+ A  + A
Sbjct:  316 YVPYVIEPAAGLTRSLMCFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQTVAQNLADDLRFNEWMIDYDESG-AIGRRYRRQDEIGTPLCITVDFDTLEDHAVTIRERDTMAQERVALDKVADYVAA 457          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_PYRAB (Glycyl-tRNA synthetase OS=Pyrococcus abyssi GN=glyS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.092e-14
Identity = 51/143 (35.66%), Postives = 79/143 (55.24%), Query Frame = 3
Query:   30 PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVF-RFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVTDG 443
            P V+EPSFGI R  Y L E+S         DE   ++ +    +API+  V PLV  +   ++A  +   L+  G     D    SIGKRY R DE+G P+ +T+D+ +    +VTIR+RD+++QIRV +++    +K +  G
Sbjct:  435 PHVLEPSFGIDRPFYLLLENSLTI------DEDGRIYLKIKKDMAPIEVAVLPLVAKEPLTKIAYDLFRKLQKEGFIVVYD-EKDSIGKRYMRYDEIGTPYCVTIDNQTPIDGTVTIRDRDTREQIRVKLEDVPRKLKELIFG 570          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_MYCGA (Glycyl-tRNA synthetase OS=Mycoplasma gallisepticum GN=glyQS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.863e-14
Identity = 49/138 (35.51%), Postives = 77/138 (55.80%), Query Frame = 3
Query:   30 PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDI-TGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIK 428
            P VIEPS GI RI+Y ++  + Y     A ++   V R P  ++P +  + PLV N+  ++  ++   LLK++  + + D  +  SIGKRY R D +G  + +T D  S     VTIRERDS +QI++ + E    I+
Sbjct:  324 PDVIEPSLGIERILYAIF-CAHYHVEQLADNDSREVLRLPVSLSPYQLAILPLV-NKLKDQAYQLYLDLLKISDANLRFDFDSAGSIGKRYRRYDAIGAKYCLTYDFDSLEKGIVTIRERDSMEQIKIPISELRQWIR 459          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_CLOCE (Glycyl-tRNA synthetase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=glyQS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.433e-14
Identity = 52/136 (38.24%), Postives = 72/136 (52.94%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAAS 419
            + P  IEPS G  R+       ++       GD +  V RF P +AP+K  V PL   +  E+  KV   L K     +  D TG SIGKRY R DE+G P+ IT D  S    SVTIR+RD+  Q+R+ +++ A+
Sbjct:  324 YVPYCIEPSLGADRVTLAFLCEAYDEEEVAEGDVR-TVLRFHPALAPVKIAVLPL-SKKLGEDADKVYQMLAKSYYCEY--DETG-SIGKRYRRQDEIGTPYCITFDFDSLEDKSVTIRDRDTMQQVRIKIEDLAA 454          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_EUBR3 (Glycyl-tRNA synthetase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyQS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.177e-14
Identity = 52/137 (37.96%), Postives = 71/137 (51.82%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCL----YEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTSS----VTIRERDSKDQIRVSVDE 410
            + P VIEPS G  R++       Y+      P K   +   VF F P +AP+K  V PL +    E   KV + L K     +  D  GT IGKRY R DE+G PF +T D  S     VT+R+RD+ +Q R+++DE
Sbjct:  324 YLPYVIEPSLGADRVVLAFLCAAYDEEDIGTPEKP--DVRTVFHFHPALAPVKIGVLPLSKKLN-ESAEKVFAQLSKTYNCEY--DDRGT-IGKRYRRQDEIGTPFCVTYDFDSEEDHCVTVRDRDTMEQERIAIDE 454          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_THEFY (Glycyl-tRNA synthetase OS=Thermobifida fusca (strain YX) GN=glyQS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.149e-14
Identity = 50/136 (36.76%), Postives = 77/136 (56.62%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGR--IIYCLYEHSFYTRPSKAGD-EQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDE 410
            F P VIEPS G+ R  + + L  ++    P+  G  E+  V R  P +AP+K  V PL +N      A+ ++  L+    + + D  G +IG+RY R DE+G PF +T+D      ++VT+RERDS  Q R+S+D+
Sbjct:  317 FIPYVIEPSAGVDRTMLTFLLDAYTEDEAPNAKGKMEKRVVMRLDPRLAPVKAAVLPLSRNADLSPKARDLAAKLRKRW-NVEFDDAG-AIGRRYRRQDEIGTPFCVTIDFDTLEDNAVTVRERDSMAQERISIDQ 450          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_CLOK5 (Glycyl-tRNA synthetase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=glyQS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.419e-14
Identity = 50/139 (35.97%), Postives = 70/139 (50.36%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDEAASVIK 428
            + P  IEPS G  R +      ++     + GD +  V  F P +AP K  + PL +    E+   V + L K   + +  D  G SIGKRY R DE+G P+ IT+D       +VTIR+RD+  Q RV +DE    IK
Sbjct:  325 YIPYCIEPSVGADRAVLAFLVDAYDEEELEGGDVR-TVMHFHPAIAPFKVAILPLSKKLS-EKALDVYNMLRKDFNVDY--DDAG-SIGKRYRREDEIGTPYCITIDFDTMDNDTVTIRDRDTMKQFRVKIDELKDFIK 458          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_CLOK1 (Glycyl-tRNA synthetase OS=Clostridium kluyveri (strain NBRC 12016) GN=glyQS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.419e-14
Identity = 50/139 (35.97%), Postives = 70/139 (50.36%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDEAASVIK 428
            + P  IEPS G  R +      ++     + GD +  V  F P +AP K  + PL +    E+   V + L K   + +  D  G SIGKRY R DE+G P+ IT+D       +VTIR+RD+  Q RV +DE    IK
Sbjct:  325 YIPYCIEPSVGADRAVLAFLVDAYDEEELEGGDVR-TVMHFHPAIAPFKVAILPLSKKLS-EKALDVYNMLRKDFNVDY--DDAG-SIGKRYRREDEIGTPYCITIDFDTMDNDTVTIRDRDTMKQFRVKIDELKDFIK 458          
The following BLAST results are available for this feature:
BLAST of CX288780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
SYG_STRCO2.200e-1536.62Glycyl-tRNA synthetase OS=Streptomyces coelicolor ... [more]
SYG_RHOBA2.874e-1539.16Glycyl-tRNA synthetase OS=Rhodopirellula baltica G... [more]
SYG_BIFLO6.402e-1534.97Glycyl-tRNA synthetase OS=Bifidobacterium longum G... [more]
SYG_PYRAB1.092e-1435.66Glycyl-tRNA synthetase OS=Pyrococcus abyssi GN=gly... [more]
SYG_MYCGA1.863e-1435.51Glycyl-tRNA synthetase OS=Mycoplasma gallisepticum... [more]
SYG_CLOCE2.433e-1438.24Glycyl-tRNA synthetase OS=Clostridium cellulolytic... [more]
SYG_EUBR33.177e-1437.96Glycyl-tRNA synthetase OS=Eubacterium rectale (str... [more]
SYG_THEFY4.149e-1436.76Glycyl-tRNA synthetase OS=Thermobifida fusca (stra... [more]
SYG_CLOK55.419e-1435.97Glycyl-tRNA synthetase OS=Clostridium kluyveri (st... [more]
SYG_CLOK15.419e-1435.97Glycyl-tRNA synthetase OS=Clostridium kluyveri (st... [more]

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Properties
Property NameValue
Genbank descriptionC02004C11SK IF1 Citrus clementina cDNA clone C02004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288780 ID=CX288780; Name=CX288780; organism=Citrus clementina; type=EST; length=510bp
AAAAGAAAGAACACCAGAGAGTTTTCACCCCATCAGTTATAGAGCCATCT
TTTGGCATTGGTCGAATTATATACTGCCTCTATGAGCACTCTTTCTATAC
AAGGCCAAGTAAAGCTGGGGATGAACAGTTAAATGTTTTCCGTTTCCCCC
CTCTTGTGGCACCTATTAAGTGCACTGTTTTCCCACTGGTTCAGAATCAA
CAGTATGAGGAGGTTGCCAAAGTCATTTCCACGTTATTAAAAGTTGCTGG
AATCTCTCACAAGATTGACATAACAGGCACCTCCATAGGGAAACGGTATG
CAAGAACAGATGAACTTGGTGTACCGTTTGCTATAACTGTTGATTCAACA
TCCTCGGTGACAATCCGAGAGCGAGATAGCAAGGATCAAATCCGTGTCAG
CGTGGATGAGGCAGCATCAGTTATAAAGGCTGTAACCGATGGACAAACGA
AGTGGGAAGATGTGTGGTCAAGTTACCCACATCACTCCTCTGAGTCAGCG
GATGCCTAAA
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