CX288780

Overview
NameCX288780
Unique NameCX288780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length510
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_BORGA (Glycyl-tRNA synthetase OS=Borrelia garinii GN=glyQS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.244e-14
Identity = 46/139 (33.09%), Postives = 78/139 (56.12%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIK 428
            + P VIE S G+ R +     +++       GD+++ V R  P +AP K  +FPLV+  +  E+A+ I   +++    H       +IGKRY R DE+G P+ +TVD ++    +VT+RER++  Q R+ +++  S IK
Sbjct:  298 YVPHVIETSAGLTRSVLMTLCNAYSEEELSDGDKRI-VLRLHPKLAPYKIAIFPLVKKVELVEIARRI--YIELCDDFHIFYDDSGTIGKRYRRQDEIGTPYCVTVDYSTIEDETVTVRERNNMTQKRIFINDLYSYIK 433          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_THERP (Glycyl-tRNA synthetase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=glyQS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.207e-13
Identity = 49/150 (32.67%), Postives = 77/150 (51.33%), Query Frame = 3
Query:    6 KEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPS---KAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGT-SIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDEAASVIKA 431
            +E    + P VIEP+ G+ R+   L   ++   P+           V RF P VAP K  V PL++  +   VA+ ++  L+      +I+   T SIG+RY R DE+G P+ +T+D       +VTIR+RD+  Q+RV +      I+A
Sbjct:  317 QERNERYIPHVIEPTMGVERLFLALLCDAYDEEPAVDVNGNPYTRVVLRFHPRVAPYKVAVLPLLRKPELVTVAREVAQELRQY---FRIEYDETQSIGRRYRRQDEIGTPYCVTIDYQTLEDRTVTIRDRDTMQQVRVPISGLVEEIEA 463          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_BORBU (Glycyl-tRNA synthetase OS=Borrelia burgdorferi GN=glyQS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.207e-13
Identity = 46/139 (33.09%), Postives = 75/139 (53.96%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDEAASVIK 428
            + P VIE S G+ R +      ++       GD+++ V R  P +AP K  +FPLV+  +  E+A+ I   +++    H       +IGKRY R DE+G P+ +T+D       +VT+RER+S  Q R+ +++  S IK
Sbjct:  298 YVPYVIETSAGLTRSVLMTLCDAYSEEELSDGDKRI-VLRLHPKLAPYKIAIFPLVKKVELTEIARRI--YMELCDDFHIFYDDSGTIGKRYRRQDEIGTPYCVTIDYNTIEDETVTVRERNSMTQKRIFINDLYSYIK 433          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_CORGL (Glycyl-tRNA synthetase OS=Corynebacterium glutamicum GN=glyQS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.577e-13
Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 3
Query:    6 KEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRP---SKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVA-KVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDE 410
            +E    + P VIEP+ G+GR +      +++      SK G ++  V +    +AP+K  V PL +      +A K+ + L +   + +    T  +IG+RY R DE+G PF +TVD  S    +VT+RERD+ +Q+RV +DE
Sbjct:  310 QETNERWIPFVIEPAAGLGRAMMMFLMDAYHEDEAPNSKGGVDKRVVLKLDRRLAPVKVAVLPLSKKDTLTPLAEKLAAELREFWNVDYD---TSGAIGRRYRRQDEIGTPFCVTVDFDSLEDNAVTVRERDTMEQVRVPLDE 449          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_THETN (Glycyl-tRNA synthetase OS=Thermoanaerobacter tengcongensis GN=glyQS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.690e-13
Identity = 50/133 (37.59%), Postives = 74/133 (55.64%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDE 410
            + P  IEPS G+ R++      + Y      G+ ++ V R  P +AP+K  VFPL  +++  E A  I   LK      + D +G SIG+RY R DE+G PF +T D  S     VTIR+RD+ +QIR+ +D+
Sbjct:  324 YIPYCIEPSVGVDRLMLAFLVDA-YDEEEVEGETRV-VLRLHPAIAPVKVAVFPL--SKKLNEAAYKIYLDLKKK-FPAEYDESG-SIGRRYRRQDEIGTPFCVTYDFDSENDHKVTIRDRDTMEQIRIDIDQ 450          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_PROAC (Glycyl-tRNA synthetase OS=Propionibacterium acnes GN=glyQS PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.690e-13
Identity = 50/138 (36.23%), Postives = 74/138 (53.62%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRP----SKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGT-SIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDE 410
            + P VIEP+ G+ R +      + YT      +K G ++  V +  P ++P+K  V PL +N      A+ ++  L+       +D     +IGKRY R DE+G PF ITVD  S    +VTIRERD+  Q RVS+D+
Sbjct:  327 YLPYVIEPAAGLTRSLMAFMVDA-YTEDEAPNAKGGVDKRTVLKLDPRLSPVKAAVLPLSRNSDLSPKARDLAARLRE---HWNVDFDDAQAIGKRYRRQDEIGTPFCITVDFDSLEDDAVTIRERDTMAQQRVSIDK 460          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_MYCPE (Glycyl-tRNA synthetase OS=Mycoplasma penetrans GN=glyQS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.690e-13
Identity = 51/141 (36.17%), Postives = 79/141 (56.03%), Query Frame = 3
Query:    6 KEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLN--VFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDE 410
            +E +  F PSVIEPS G+ R++Y +   ++     +  DE+ N  V +  P +AP K  V PL  N+  ++  ++ + L+     ++  D +G SIGKRY R D +G P+ ITVD        VTIR+RDS  QIR+ + +
Sbjct:  315 EETKEKFVPSVIEPSVGVERLLYAILIDAY---DEEKIDEENNRVVLKLIPELAPYKFAVLPL-SNKLNDKAEEIFNNLILSNICTY--DSSG-SIGKRYRRQDAIGTPYCITVDFDTLEDECVTIRDRDSMKQIRIKIKD 448          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_LYSSC (Glycyl-tRNA synthetase OS=Lysinibacillus sphaericus (strain C3-41) GN=glyQS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.690e-13
Identity = 50/139 (35.97%), Postives = 66/139 (47.48%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIK 428
            + P  IEPS G  R+       + Y      GD++  V RF P +AP K  V PL +    +E   V + L K   +         SIGKRY R DE+G PF IT D  S     VT+R RDS  Q R+ + E  + I+
Sbjct:  323 YIPYCIEPSLGADRVTLAFLCDA-YDEEELEGDDKRTVLRFHPAIAPFKAAVLPLSKKLS-DEATDVWAELRKAFPVDFD---ESQSIGKRYRRQDEIGTPFCITYDFDSKEDGQVTVRHRDSMTQERMPISEVKAYIE 456          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_LEIXX (Glycyl-tRNA synthetase OS=Leifsonia xyli subsp. xyli GN=glyQS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.690e-13
Identity = 46/135 (34.07%), Postives = 75/135 (55.56%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPS---KAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVD 407
            + P VIEPSFG+ R +      ++    +   K G ++  V    P +AP+K  V PL +N+    +A+ ++  L+    +   D +G +IG+RY R DE+G P A+TVD  S    +VT+R+RDS  Q R+ ++
Sbjct:  318 YVPFVIEPSFGLTRALMAFLVDAYDEEQAPNAKGGTDKRTVLHLDPRLAPVKVAVLPLSRNEALSPLARGLADRLRQRR-AVDFDDSG-AIGRRYRREDEIGTPLAVTVDFDSLEDDAVTVRDRDSMRQERIPLE 450          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_COREF (Glycyl-tRNA synthetase OS=Corynebacterium efficiens GN=glyQS PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.690e-13
Identity = 47/134 (35.07%), Postives = 77/134 (57.46%), Query Frame = 3
Query:   30 PSVIEPSFGIGRIIYCLYEHSFYTRP---SKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDE 410
            P VIEP+ G+GR +      +++      SK G ++  V +    +AP+K  V PL +  +    A+ ++  L+    + + D +G +IG+RY R DE+G PF +TVD      ++VT+RERD+ +QIRV +DE
Sbjct:  318 PYVIEPAAGLGRAMMVFLMDAYHEDEAPNSKGGVDKRVVLKLDRRLAPVKVAVLPLSKKPELSGPAEKLAAELRQFW-NVEYDTSG-AIGRRYRRQDEIGTPFCVTVDFDTLEDNAVTVRERDTMEQIRVPLDE 449          
The following BLAST results are available for this feature:
BLAST of CX288780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
SYG_BORGA9.244e-1433.09Glycyl-tRNA synthetase OS=Borrelia garinii GN=glyQ... [more]
SYG_THERP1.207e-1332.67Glycyl-tRNA synthetase OS=Thermomicrobium roseum (... [more]
SYG_BORBU1.207e-1333.09Glycyl-tRNA synthetase OS=Borrelia burgdorferi GN=... [more]
SYG_CORGL1.577e-1333.57Glycyl-tRNA synthetase OS=Corynebacterium glutamic... [more]
SYG_THETN2.690e-1337.59Glycyl-tRNA synthetase OS=Thermoanaerobacter tengc... [more]
SYG_PROAC2.690e-1336.23Glycyl-tRNA synthetase OS=Propionibacterium acnes ... [more]
SYG_MYCPE2.690e-1336.17Glycyl-tRNA synthetase OS=Mycoplasma penetrans GN=... [more]
SYG_LYSSC2.690e-1335.97Glycyl-tRNA synthetase OS=Lysinibacillus sphaericu... [more]
SYG_LEIXX2.690e-1334.07Glycyl-tRNA synthetase OS=Leifsonia xyli subsp. xy... [more]
SYG_COREF2.690e-1335.07Glycyl-tRNA synthetase OS=Corynebacterium efficien... [more]

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Properties
Property NameValue
Genbank descriptionC02004C11SK IF1 Citrus clementina cDNA clone C02004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288780 ID=CX288780; Name=CX288780; organism=Citrus clementina; type=EST; length=510bp
AAAAGAAAGAACACCAGAGAGTTTTCACCCCATCAGTTATAGAGCCATCT
TTTGGCATTGGTCGAATTATATACTGCCTCTATGAGCACTCTTTCTATAC
AAGGCCAAGTAAAGCTGGGGATGAACAGTTAAATGTTTTCCGTTTCCCCC
CTCTTGTGGCACCTATTAAGTGCACTGTTTTCCCACTGGTTCAGAATCAA
CAGTATGAGGAGGTTGCCAAAGTCATTTCCACGTTATTAAAAGTTGCTGG
AATCTCTCACAAGATTGACATAACAGGCACCTCCATAGGGAAACGGTATG
CAAGAACAGATGAACTTGGTGTACCGTTTGCTATAACTGTTGATTCAACA
TCCTCGGTGACAATCCGAGAGCGAGATAGCAAGGATCAAATCCGTGTCAG
CGTGGATGAGGCAGCATCAGTTATAAAGGCTGTAACCGATGGACAAACGA
AGTGGGAAGATGTGTGGTCAAGTTACCCACATCACTCCTCTGAGTCAGCG
GATGCCTAAA
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