CX288780

Overview
NameCX288780
Unique NameCX288780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length510
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_MYCTU (Glycyl-tRNA synthetase OS=Mycobacterium tuberculosis GN=glyQS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.277e-12
Identity = 49/143 (34.27%), Postives = 74/143 (51.75%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRP----SKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGT-SIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVI 425
            +TP VIEP+ G+ R  +  +    YT      +K G ++  V R  P +AP+K  V PL ++      A+ +   L+       ID     +IG+RY R DE+G PF +TVD  S    +VT+RERD+  Q RV++   A  +
Sbjct:  318 YTPYVIEPAAGLTRS-FMAFLIDAYTEDEAPNTKGGMDKRTVLRLDPRLAPVKAAVLPLSRHADLSPKARDLGAELRKCW---NIDFDDAGAIGRRYRRQDEVGTPFCVTVDFDSLQDNAVTVRERDAMTQDRVAMSSVADYL 456          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_MYCBO (Glycyl-tRNA synthetase OS=Mycobacterium bovis GN=glyQS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.277e-12
Identity = 49/143 (34.27%), Postives = 74/143 (51.75%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRP----SKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGT-SIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVI 425
            +TP VIEP+ G+ R  +  +    YT      +K G ++  V R  P +AP+K  V PL ++      A+ +   L+       ID     +IG+RY R DE+G PF +TVD  S    +VT+RERD+  Q RV++   A  +
Sbjct:  318 YTPYVIEPAAGLTRS-FMAFLIDAYTEDEAPNTKGGMDKRTVLRLDPRLAPVKAAVLPLSRHADLSPKARDLGAELRKCW---NIDFDDAGAIGRRYRRQDEVGTPFCVTVDFDSLQDNAVTVRERDAMTQDRVAMSSVADYL 456          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_BACHK (Glycyl-tRNA synthetase OS=Bacillus thuringiensis subsp. konkukian GN=glyQS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.277e-12
Identity = 47/133 (35.34%), Postives = 69/133 (51.88%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDE 410
            + P  IEPS G  R+       ++     +  ++   V RF P +AP K  + PL +    E   +V + L K   +    D TG SIGKRY R DE+G PF IT D  S    +VT+R+RD+ +Q+R+ + E
Sbjct:  321 YVPYCIEPSLGADRVTLAFLCDAY--EEEQLENDSRTVLRFHPALAPYKAAILPLSKKLS-EGATEVFAELAKDFMVD--FDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISE 447          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_BACCZ (Glycyl-tRNA synthetase OS=Bacillus cereus (strain ZK / E33L) GN=glyQS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.277e-12
Identity = 47/133 (35.34%), Postives = 69/133 (51.88%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDE 410
            + P  IEPS G  R+       ++     +  ++   V RF P +AP K  + PL +    E   +V + L K   +    D TG SIGKRY R DE+G PF IT D  S    +VT+R+RD+ +Q+R+ + E
Sbjct:  321 YVPYCIEPSLGADRVTLAFLCDAY--EEEQLENDSRTVLRFHPALAPYKAAILPLSKKLS-EGATEVFAELAKDFMVD--FDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISE 447          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_BACC1 (Glycyl-tRNA synthetase OS=Bacillus cereus (strain ATCC 10987) GN=glyQS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.277e-12
Identity = 47/133 (35.34%), Postives = 69/133 (51.88%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDE 410
            + P  IEPS G  R+       ++     +  ++   V RF P +AP K  + PL +    E   +V + L K   +    D TG SIGKRY R DE+G PF IT D  S    +VT+R+RD+ +Q+R+ + E
Sbjct:  321 YVPYCIEPSLGADRVTLAFLCDAY--EEEQLENDSRTVLRFHPALAPYKAAILPLSKKLS-EGATEVFAELAKDFMVD--FDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISE 447          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_BACAN (Glycyl-tRNA synthetase OS=Bacillus anthracis GN=glyQS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.277e-12
Identity = 47/133 (35.34%), Postives = 69/133 (51.88%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDE 410
            + P  IEPS G  R+       ++     +  ++   V RF P +AP K  + PL +    E   +V + L K   +    D TG SIGKRY R DE+G PF IT D  S    +VT+R+RD+ +Q+R+ + E
Sbjct:  321 YVPYCIEPSLGADRVTLAFLCDAY--EEEQLENDSRTVLRFHPALAPYKAAILPLSKKLS-EGATEVFAELAKDFMVD--FDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQVRMPISE 447          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_TREDE (Glycyl-tRNA synthetase OS=Treponema denticola GN=glyQS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.974e-12
Identity = 53/143 (37.06%), Postives = 74/143 (51.75%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAG----DEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIK 428
            + P +IE S G+ R +  ++    Y     A     D+   V RF P +API   V PL++     E+A+ I   LK        D +G +IGKRY R DE+G PF +TVD  S    +VT+R RDS +Q+R+   E  S IK
Sbjct:  302 YIPYIIETSAGLTRNVL-MFICDAYDEEKVADKGNDDDWRTVLRFHPNIAPITVAVLPLMKKDGLAELAEEIRNELKEE-FKTDYDQSG-AIGKRYRRQDEVGTPFCVTVDYDSKEDNTVTLRFRDSMEQVRIPRTELISRIK 441          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_STAES (Glycyl-tRNA synthetase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=glyQS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.974e-12
Identity = 47/139 (33.81%), Postives = 66/139 (47.48%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGT-SIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDE 410
            E    + P  IEPS G  R+       ++     +   +   V  F P +AP K  V PL +    E + K+   L      S  ID   + SIGKRY R DE+G P+ IT D  S     VT+R+RDS +Q+R+ + E
Sbjct:  319 ETNEKYIPYCIEPSLGADRVTLAFLCDAYAEEGVEGSKDARTVMHFHPALAPYKAAVLPLSKKLSSEAI-KIFEQLSS----SFAIDFDESQSIGKRYRRQDEIGTPYCITFDFDSLEDNQVTVRDRDSMEQVRMPISE 452          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_STAEQ (Glycyl-tRNA synthetase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=glyQS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.974e-12
Identity = 47/139 (33.81%), Postives = 66/139 (47.48%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGT-SIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDE 410
            E    + P  IEPS G  R+       ++     +   +   V  F P +AP K  V PL +    E + K+   L      S  ID   + SIGKRY R DE+G P+ IT D  S     VT+R+RDS +Q+R+ + E
Sbjct:  319 ETNEKYIPYCIEPSLGADRVTLAFLCDAYAEEGVEGSKDARTVMHFHPALAPYKAAVLPLSKKLSSEAI-KIFEQLSS----SFAIDFDESQSIGKRYRRQDEIGTPYCITFDFDSLEDNQVTVRDRDSMEQVRMPISE 452          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_CLOPH (Glycyl-tRNA synthetase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=glyQS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.884e-12
Identity = 47/133 (35.34%), Postives = 69/133 (51.88%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDE 410
            + P VIEPS G  R+       ++       GD +  V  F P +AP+K  V PL +    E   K+ + L K      + D  G +IGKRY R DE+G PF IT D  S    +VT+R+RD+ +Q R+ +++
Sbjct:  324 YIPYVIEPSLGADRVTLAFLCAAYDEEEIAEGDVR-TVLHFHPAIAPVKIGVLPLSKKLS-ENAEKIYTDLSKYYNC--EFDDRG-NIGKRYRRQDEIGTPFCITYDFDSETDGAVTVRDRDTMEQERIKIED 451          
The following BLAST results are available for this feature:
BLAST of CX288780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
SYG_MYCTU2.277e-1234.27Glycyl-tRNA synthetase OS=Mycobacterium tuberculos... [more]
SYG_MYCBO2.277e-1234.27Glycyl-tRNA synthetase OS=Mycobacterium bovis GN=g... [more]
SYG_BACHK2.277e-1235.34Glycyl-tRNA synthetase OS=Bacillus thuringiensis s... [more]
SYG_BACCZ2.277e-1235.34Glycyl-tRNA synthetase OS=Bacillus cereus (strain ... [more]
SYG_BACC12.277e-1235.34Glycyl-tRNA synthetase OS=Bacillus cereus (strain ... [more]
SYG_BACAN2.277e-1235.34Glycyl-tRNA synthetase OS=Bacillus anthracis GN=gl... [more]
SYG_TREDE2.974e-1237.06Glycyl-tRNA synthetase OS=Treponema denticola GN=g... [more]
SYG_STAES2.974e-1233.81Glycyl-tRNA synthetase OS=Staphylococcus epidermid... [more]
SYG_STAEQ2.974e-1233.81Glycyl-tRNA synthetase OS=Staphylococcus epidermid... [more]
SYG_CLOPH3.884e-1235.34Glycyl-tRNA synthetase OS=Clostridium phytoferment... [more]

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Properties
Property NameValue
Genbank descriptionC02004C11SK IF1 Citrus clementina cDNA clone C02004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288780 ID=CX288780; Name=CX288780; organism=Citrus clementina; type=EST; length=510bp
AAAAGAAAGAACACCAGAGAGTTTTCACCCCATCAGTTATAGAGCCATCT
TTTGGCATTGGTCGAATTATATACTGCCTCTATGAGCACTCTTTCTATAC
AAGGCCAAGTAAAGCTGGGGATGAACAGTTAAATGTTTTCCGTTTCCCCC
CTCTTGTGGCACCTATTAAGTGCACTGTTTTCCCACTGGTTCAGAATCAA
CAGTATGAGGAGGTTGCCAAAGTCATTTCCACGTTATTAAAAGTTGCTGG
AATCTCTCACAAGATTGACATAACAGGCACCTCCATAGGGAAACGGTATG
CAAGAACAGATGAACTTGGTGTACCGTTTGCTATAACTGTTGATTCAACA
TCCTCGGTGACAATCCGAGAGCGAGATAGCAAGGATCAAATCCGTGTCAG
CGTGGATGAGGCAGCATCAGTTATAAAGGCTGTAACCGATGGACAAACGA
AGTGGGAAGATGTGTGGTCAAGTTACCCACATCACTCCTCTGAGTCAGCG
GATGCCTAAA
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