CX288780

Overview
NameCX288780
Unique NameCX288780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length510
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_EUBE2 (Glycyl-tRNA synthetase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=glyQS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.072e-12
Identity = 49/136 (36.03%), Postives = 68/136 (50.00%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSV 404
            E +  + P VIEPS G  R+    +  S Y      G +   V  F P +AP+K  + PL +    E   KV + L K      + D  G +IGKRY R DE+G PF IT D  S    +VT+R+RD+  Q R+ +
Sbjct:  319 EAKEKYIPYVIEPSLGADRVTLA-FLCSAYDEEELEGGDVRTVLHFHPAIAPVKIGILPLSKKLN-EGAEKVYAELSKYYNC--EFDDRG-NIGKRYRRQDEIGTPFCITYDFDSEEDGAVTVRDRDTMQQERIKI 449          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_NOCFA (Glycyl-tRNA synthetase OS=Nocardia farcinica GN=glyQS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.625e-12
Identity = 48/136 (35.29%), Postives = 72/136 (52.94%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPS---KAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDE 410
            + P VIEP+ G+ R +      ++    +   K G +   V R    +AP+K  V PL +N      AK ++  L+    + + D  G +IG+RY R DE+G PF ITVD       +VTIRERDS  Q R+++D+
Sbjct:  321 YIPYVIEPAAGLTRSLMAFLVDAYAEDEAPNAKGGVDVRTVLRLDRRLAPVKAAVLPLSRNADLTPKAKDLAAQLRKHW-NVEFDDAG-AIGRRYRRQDEIGTPFCITVDFDTLEDQAVTIRERDSMAQERIALDK 454          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_STAAW (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain MW2) GN=glyQS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 44/147 (29.93%), Postives = 66/147 (44.90%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVT 437
            E    + P  IEPS G  R+       ++     +   +   V  F P +AP K  + PL +    E + K+   L     I         SIGKRY R DE+G P+ +T D  S     VT+R+RDS +Q+R+ + E  + +   T
Sbjct:  319 ETNEKYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSGEAI-KIFEQLSSKFSIDFD---ESQSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEAFLTEKT 461          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_STAAT (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=glyQS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 44/147 (29.93%), Postives = 66/147 (44.90%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVT 437
            E    + P  IEPS G  R+       ++     +   +   V  F P +AP K  + PL +    E + K+   L     I         SIGKRY R DE+G P+ +T D  S     VT+R+RDS +Q+R+ + E  + +   T
Sbjct:  319 ETNEKYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSGEAI-KIFEQLSSKFSIDFD---ESQSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEAFLTEKT 461          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_STAAS (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain MSSA476) GN=glyQS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 44/147 (29.93%), Postives = 66/147 (44.90%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVT 437
            E    + P  IEPS G  R+       ++     +   +   V  F P +AP K  + PL +    E + K+   L     I         SIGKRY R DE+G P+ +T D  S     VT+R+RDS +Q+R+ + E  + +   T
Sbjct:  319 ETNEKYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSGEAI-KIFEQLSSKFSIDFD---ESQSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEAFLTEKT 461          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_STAAR (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain MRSA252) GN=glyQS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 44/147 (29.93%), Postives = 66/147 (44.90%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVT 437
            E    + P  IEPS G  R+       ++     +   +   V  F P +AP K  + PL +    E + K+   L     I         SIGKRY R DE+G P+ +T D  S     VT+R+RDS +Q+R+ + E  + +   T
Sbjct:  319 ETNEKYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSGEAI-KIFEQLSSKFSIDFD---ESQSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEAFLTEKT 461          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_STAAN (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain N315) GN=glyQS PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 44/147 (29.93%), Postives = 66/147 (44.90%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVT 437
            E    + P  IEPS G  R+       ++     +   +   V  F P +AP K  + PL +    E + K+   L     I         SIGKRY R DE+G P+ +T D  S     VT+R+RDS +Q+R+ + E  + +   T
Sbjct:  319 ETNEKYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSGEAI-KIFEQLSSKFSIDFD---ESQSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEAFLTEKT 461          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_STAAM (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=glyQS PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 44/147 (29.93%), Postives = 66/147 (44.90%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVT 437
            E    + P  IEPS G  R+       ++     +   +   V  F P +AP K  + PL +    E + K+   L     I         SIGKRY R DE+G P+ +T D  S     VT+R+RDS +Q+R+ + E  + +   T
Sbjct:  319 ETNEKYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSGEAI-KIFEQLSSKFSIDFD---ESQSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEAFLTEKT 461          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_STAAE (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain Newman) GN=glyQS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 44/147 (29.93%), Postives = 66/147 (44.90%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVT 437
            E    + P  IEPS G  R+       ++     +   +   V  F P +AP K  + PL +    E + K+   L     I         SIGKRY R DE+G P+ +T D  S     VT+R+RDS +Q+R+ + E  + +   T
Sbjct:  319 ETNEKYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSGEAI-KIFEQLSSKFSIDFD---ESQSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEAFLTEKT 461          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_STAAC (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain COL) GN=glyQS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 44/147 (29.93%), Postives = 66/147 (44.90%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVT 437
            E    + P  IEPS G  R+       ++     +   +   V  F P +AP K  + PL +    E + K+   L     I         SIGKRY R DE+G P+ +T D  S     VT+R+RDS +Q+R+ + E  + +   T
Sbjct:  319 ETNEKYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSGEAI-KIFEQLSSKFSIDFD---ESQSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEAFLTEKT 461          
The following BLAST results are available for this feature:
BLAST of CX288780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
SYG_EUBE25.072e-1236.03Glycyl-tRNA synthetase OS=Eubacterium eligens (str... [more]
SYG_NOCFA6.625e-1235.29Glycyl-tRNA synthetase OS=Nocardia farcinica GN=gl... [more]
SYG_STAAW8.652e-1229.93Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAAT8.652e-1229.93Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAAS8.652e-1229.93Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAAR8.652e-1229.93Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAAN8.652e-1229.93Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAAM8.652e-1229.93Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAAE8.652e-1229.93Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAAC8.652e-1229.93Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]

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Properties
Property NameValue
Genbank descriptionC02004C11SK IF1 Citrus clementina cDNA clone C02004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288780 ID=CX288780; Name=CX288780; organism=Citrus clementina; type=EST; length=510bp
AAAAGAAAGAACACCAGAGAGTTTTCACCCCATCAGTTATAGAGCCATCT
TTTGGCATTGGTCGAATTATATACTGCCTCTATGAGCACTCTTTCTATAC
AAGGCCAAGTAAAGCTGGGGATGAACAGTTAAATGTTTTCCGTTTCCCCC
CTCTTGTGGCACCTATTAAGTGCACTGTTTTCCCACTGGTTCAGAATCAA
CAGTATGAGGAGGTTGCCAAAGTCATTTCCACGTTATTAAAAGTTGCTGG
AATCTCTCACAAGATTGACATAACAGGCACCTCCATAGGGAAACGGTATG
CAAGAACAGATGAACTTGGTGTACCGTTTGCTATAACTGTTGATTCAACA
TCCTCGGTGACAATCCGAGAGCGAGATAGCAAGGATCAAATCCGTGTCAG
CGTGGATGAGGCAGCATCAGTTATAAAGGCTGTAACCGATGGACAAACGA
AGTGGGAAGATGTGTGGTCAAGTTACCCACATCACTCCTCTGAGTCAGCG
GATGCCTAAA
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