CX288780

Overview
NameCX288780
Unique NameCX288780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length510
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_STAAB (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=glyQS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 44/147 (29.93%), Postives = 66/147 (44.90%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVT 437
            E    + P  IEPS G  R+       ++     +   +   V  F P +AP K  + PL +    E + K+   L     I         SIGKRY R DE+G P+ +T D  S     VT+R+RDS +Q+R+ + E  + +   T
Sbjct:  319 ETNEKYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSGEAI-KIFEQLSSKFSIDFD---ESQSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEAFLTEKT 461          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_STAA9 (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain JH9) GN=glyQS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 44/147 (29.93%), Postives = 66/147 (44.90%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVT 437
            E    + P  IEPS G  R+       ++     +   +   V  F P +AP K  + PL +    E + K+   L     I         SIGKRY R DE+G P+ +T D  S     VT+R+RDS +Q+R+ + E  + +   T
Sbjct:  319 ETNEKYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSGEAI-KIFEQLSSKFSIDFD---ESQSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEAFLTEKT 461          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_STAA8 (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain NCTC 8325) GN=glyQS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 44/147 (29.93%), Postives = 66/147 (44.90%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVT 437
            E    + P  IEPS G  R+       ++     +   +   V  F P +AP K  + PL +    E + K+   L     I         SIGKRY R DE+G P+ +T D  S     VT+R+RDS +Q+R+ + E  + +   T
Sbjct:  319 ETNEKYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSGEAI-KIFEQLSSKFSIDFD---ESQSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEAFLTEKT 461          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_STAA3 (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain USA300) GN=glyQS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 44/147 (29.93%), Postives = 66/147 (44.90%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVT 437
            E    + P  IEPS G  R+       ++     +   +   V  F P +AP K  + PL +    E + K+   L     I         SIGKRY R DE+G P+ +T D  S     VT+R+RDS +Q+R+ + E  + +   T
Sbjct:  319 ETNEKYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSGEAI-KIFEQLSSKFSIDFD---ESQSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEAFLTEKT 461          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_STAA2 (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain JH1) GN=glyQS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 44/147 (29.93%), Postives = 66/147 (44.90%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVT 437
            E    + P  IEPS G  R+       ++     +   +   V  F P +AP K  + PL +    E + K+   L     I         SIGKRY R DE+G P+ +T D  S     VT+R+RDS +Q+R+ + E  + +   T
Sbjct:  319 ETNEKYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSGEAI-KIFEQLSSKFSIDFD---ESQSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEAFLTEKT 461          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_STAA1 (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=glyQS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 44/147 (29.93%), Postives = 66/147 (44.90%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVT 437
            E    + P  IEPS G  R+       ++     +   +   V  F P +AP K  + PL +    E + K+   L     I         SIGKRY R DE+G P+ +T D  S     VT+R+RDS +Q+R+ + E  + +   T
Sbjct:  319 ETNEKYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSGEAI-KIFEQLSSKFSIDFD---ESQSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEAFLTEKT 461          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_ALKOO (Glycyl-tRNA synthetase OS=Alkaliphilus oremlandii (strain OhILAs) GN=glyQS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.927e-11
Identity = 47/138 (34.06%), Postives = 70/138 (50.72%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVI 425
            + P  IEPS G+ R+       ++        D ++ V R  P +AP K  V PL +  + ++  ++  TL +   + +  D  G SIGKRY R DE+G PF IT D  S     VTIR RDS +Q R+ + E  + +
Sbjct:  324 YVPYCIEPSVGVDRVALAFLVDAYDEEVIDEKDTRV-VLRLHPALAPFKAAVLPLTKKLK-DQALELYETLSENYMVDY--DEAG-SIGKRYRRHDEIGTPFCITFDYDSLEDQCVTIRHRDSMEQERIQISELTTYL 456          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_STAS1 (Glycyl-tRNA synthetase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=glyQS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.517e-11
Identity = 44/138 (31.88%), Postives = 64/138 (46.38%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVI 425
            + P  IEPS G  R+       ++     +   +   V  F P +AP K  V PL +    + + KV   L     I         SIGKRY R DE+G P+ IT D  S     VT+R+RD+ +Q+R+ + E  S +
Sbjct:  324 YIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDSRTVLHFHPALAPYKAAVLPLSKKLSGDAI-KVFEELSADFAIDFD---ESQSIGKRYRRQDEIGTPYCITFDFDSLEDEKVTVRDRDTMEQVRMPITELKSFL 457          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_MYCPA (Glycyl-tRNA synthetase OS=Mycobacterium paratuberculosis GN=glyQS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.517e-11
Identity = 48/147 (32.65%), Postives = 74/147 (50.34%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYT--RPSKAGD-EQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVTDG 443
            + P VIEP+ G+ R        ++     P+  G  E+  V R  P +AP+K  V PL ++      A+ ++  L+    + + D  G +IG+RY R DE+G PF +TVD  S    +VT+R RD   Q R+ +D  A  + A   G
Sbjct:  318 YIPYVIEPAAGLTRSFMAFLIDAYVEDEAPNAKGKMEKRAVLRLDPRLAPVKAAVLPLSRHADLSPKARDLAAELRRFW-NIEFDDAG-AIGRRYRRQDEIGTPFCVTVDFDSLEDNAVTVRRRDDMSQERIGMDAVADYLSARLKG 462          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_MYCGE (Glycyl-tRNA synthetase OS=Mycoplasma genitalium GN=glyQS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.517e-11
Identity = 49/133 (36.84%), Postives = 71/133 (53.38%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDE 410
            F P +IEP+ GI R+ Y L   S+  R     +E+  V   P  + P +  V PLV N+  +E   V  TL K        + TG SIGKRY + D +G+ +A+T D  S    +VTIR+RD+  Q R+++ E
Sbjct:  309 FLPFIIEPAVGIERLFYALIVSSY--RREIINEEEREVLSLPFDLCPEQIIVLPLV-NKLKKEAFSVFETLAKTRW-RVCFETTG-SIGKRYRKADAIGIKYAVTFDFESLEDNAVTIRDRDTLVQQRIAIKE 436          
The following BLAST results are available for this feature:
BLAST of CX288780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
SYG_STAAB8.652e-1229.93Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAA98.652e-1229.93Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAA88.652e-1229.93Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAA38.652e-1229.93Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAA28.652e-1229.93Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAA18.652e-1229.93Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_ALKOO1.927e-1134.06Glycyl-tRNA synthetase OS=Alkaliphilus oremlandii ... [more]
SYG_STAS12.517e-1131.88Glycyl-tRNA synthetase OS=Staphylococcus saprophyt... [more]
SYG_MYCPA2.517e-1132.65Glycyl-tRNA synthetase OS=Mycobacterium paratuberc... [more]
SYG_MYCGE2.517e-1136.84Glycyl-tRNA synthetase OS=Mycoplasma genitalium GN... [more]

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Properties
Property NameValue
Genbank descriptionC02004C11SK IF1 Citrus clementina cDNA clone C02004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288780 ID=CX288780; Name=CX288780; organism=Citrus clementina; type=EST; length=510bp
AAAAGAAAGAACACCAGAGAGTTTTCACCCCATCAGTTATAGAGCCATCT
TTTGGCATTGGTCGAATTATATACTGCCTCTATGAGCACTCTTTCTATAC
AAGGCCAAGTAAAGCTGGGGATGAACAGTTAAATGTTTTCCGTTTCCCCC
CTCTTGTGGCACCTATTAAGTGCACTGTTTTCCCACTGGTTCAGAATCAA
CAGTATGAGGAGGTTGCCAAAGTCATTTCCACGTTATTAAAAGTTGCTGG
AATCTCTCACAAGATTGACATAACAGGCACCTCCATAGGGAAACGGTATG
CAAGAACAGATGAACTTGGTGTACCGTTTGCTATAACTGTTGATTCAACA
TCCTCGGTGACAATCCGAGAGCGAGATAGCAAGGATCAAATCCGTGTCAG
CGTGGATGAGGCAGCATCAGTTATAAAGGCTGTAACCGATGGACAAACGA
AGTGGGAAGATGTGTGGTCAAGTTACCCACATCACTCCTCTGAGTCAGCG
GATGCCTAAA
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