CX288784

Overview
NameCX288784
Unique NameCX288784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length415
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_MACFA (40S ribosomal protein S24 OS=Macaca fascicularis GN=RPS24 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.360e-38
Identity = 79/110 (71.82%), Postives = 90/110 (81.82%), Query Frame = 1
Query:   85 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414
            VTIRTRKFMTNRLL RKQ VI VLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIGVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNR 113          
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.597e-37
Identity = 77/115 (66.96%), Postives = 92/115 (80.00%), Query Frame = 1
Query:   70 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414
            M +   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY V  P+ +FVF F+T+FGGGKSTGF LIYD++D AKKFEPK+RL R+GL  K   +RKQ KERKNR
Sbjct:    1 MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNR 114          
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_ICTPU (40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.352e-36
Identity = 74/111 (66.67%), Postives = 90/111 (81.08%), Query Frame = 1
Query:   82 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414
            +VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY    P+ +FVF F+T FGGGK+TGF ++YDS+D AKK EPKYRL R+GL  K + SRKQ KERKNR
Sbjct:    4 SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFKTQFGGGKTTGFAMVYDSLDYAKKNEPKYRLARHGLYEKKKTSRKQRKERKNR 113          
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_TAKRU (40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.765e-36
Identity = 74/110 (67.27%), Postives = 89/110 (80.91%), Query Frame = 1
Query:   85 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414
            VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY    P+ +FVF FRT FGGGK+TGF ++YDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR
Sbjct:    5 VTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLARHGLFEKKKTSRKQRKERKNR 113          
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_RHIRA (40S ribosomal protein S24 OS=Rhizomucor racemosus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.348e-35
Identity = 72/114 (63.16%), Postives = 88/114 (77.19%), Query Frame = 1
Query:   73 ADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414
            AD AVTIRTRKF+TNRLL RKQ V+DV+HPG ANVSK EL+ K+ +MY   D   + VF F+THFGGGK+TGF LIYD+V++ K FEPK+RL+R GL    +  RKQ KE+KNR
Sbjct:   20 ADAAVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKA-DKEVVSVFGFKTHFGGGKTTGFALIYDNVEALKNFEPKHRLVRIGLAEAPKGGRKQRKEKKNR 132          
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_ORYLA (40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.686e-35
Identity = 72/110 (65.45%), Postives = 87/110 (79.09%), Query Frame = 1
Query:   85 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414
            VTIRTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY    P+ +FVF FRT FGGGK+TGF ++YDS+D AKK EPK+RL  +GL  K + SRKQ  ER+NR
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLATHGLYEKKKTSRKQRTERQNR 113          
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_YEAST (40S ribosomal protein S24 OS=Saccharomyces cerevisiae GN=RPS24A PE=1 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 1.265e-34
Identity = 75/112 (66.96%), Postives = 91/112 (81.25%), Query Frame = 1
Query:   82 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNR 414
            AVTIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y   + +++ VF FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R GL  KVEK SR+Q K++KNR
Sbjct:    4 AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNR 114          
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24B_SCHPO (40S ribosomal protein S24-B OS=Schizosaccharomyces pombe GN=rps24b PE=2 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 1.265e-34
Identity = 72/113 (63.72%), Postives = 89/113 (78.76%), Query Frame = 1
Query:   79 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNR 414
            +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK E++EKLA+MY   D   +  F  RTHFGGG+STGF LIYDS +S KKFEP YRL+R G    ++K +R+Q K+RKNR
Sbjct:    3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKT-DSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNR 114          
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24A_SCHPO (40S ribosomal protein S24-A OS=Schizosaccharomyces pombe GN=rps24a PE=2 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 1.827e-33
Identity = 68/113 (60.18%), Postives = 90/113 (79.65%), Query Frame = 1
Query:   79 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNR 414
            +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK +L+EKL +MY   D +++  F  RTH+GGG++TGF LIYD V++ KKFEP YRL+R G    ++K +R+Q K+RKNR
Sbjct:    3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKT-DASAVQAFGLRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNR 114          
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_PYRKO (30S ribosomal protein S24e OS=Pyrococcus kodakaraensis GN=rps24e PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.378e-11
Identity = 35/97 (36.08%), Postives = 54/97 (55.67%), Query Frame = 1
Query:   91 IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK 381
            I+  +   N+LL RK+   DVLH G    S+  +K KL  M D+ DPN+  +   R++FG   S G+   Y++ +     EP+Y L+R+GL  K E+
Sbjct:    3 IKVTEIRENKLLGRKEIYFDVLHEGEPTPSREAVKGKLVAMLDL-DPNTTVIQYIRSYFGSNVSKGYAKAYETRERMLYIEPEYILVRDGLVQKQEE 98          
The following BLAST results are available for this feature:
BLAST of CX288784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RS24_MACFA9.360e-3871.8240S ribosomal protein S24 OS=Macaca fascicularis G... [more]
RS24_SPOFR1.597e-3766.9640S ribosomal protein S24 OS=Spodoptera frugiperda... [more]
RS24_ICTPU1.352e-3666.6740S ribosomal protein S24 OS=Ictalurus punctatus G... [more]
RS24_TAKRU1.765e-3667.2740S ribosomal protein S24 OS=Takifugu rubripes GN=... [more]
RS24_RHIRA4.348e-3563.1640S ribosomal protein S24 OS=Rhizomucor racemosus ... [more]
RS24_ORYLA9.686e-3565.4540S ribosomal protein S24 OS=Oryzias latipes GN=rp... [more]
RS24_YEAST1.265e-3466.9640S ribosomal protein S24 OS=Saccharomyces cerevis... [more]
RS24B_SCHPO1.265e-3463.7240S ribosomal protein S24-B OS=Schizosaccharomyces... [more]
RS24A_SCHPO1.827e-3360.1840S ribosomal protein S24-A OS=Schizosaccharomyces... [more]
RS24_PYRKO4.378e-1136.0830S ribosomal protein S24e OS=Pyrococcus kodakarae... [more]

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Properties
Property NameValue
Genbank descriptionC02004D03SK IF1 Citrus clementina cDNA clone C02004D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288784 ID=CX288784; Name=CX288784; organism=Citrus clementina; type=EST; length=415bp
TCATTGCCTAGTCGCGCCTCTCGTGCTATATCTTTGTCGAGGATTCAGCA
GACTTTTAACCAACCAACAATGGCGGACAAGGCTGTCACCATTCGAACTA
GGAAGTTCATGACCAACCGTCTCCTTTCCAGGAAGCAATTCGTTATTGAT
GTTCTTCATCCTGGCAGGGCCAATGTTTCCAAGGCTGAGTTGAAGGAGAA
GTTGGCAAGGATGTATGATGTGAAGGACCCCAACTCAATCTTTGTTTTTA
AGTTCCGAACTCACTTTGGAGGTGGGAAATCTACCGGCTTTGGTCTGATC
TATGATTCAGTTGACAGTGCTAAGAAGTTTGAGCCCAAGTACAGGCTTAT
CAGGAATGGACTTGATACCAAGGTAGAGAAGTCAAGGAAGCAGATGAAGG
AAAGGAAGAACAGGG
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