CX288784
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_MACFA (40S ribosomal protein S24 OS=Macaca fascicularis GN=RPS24 PE=2 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 9.360e-38 Identity = 79/110 (71.82%), Postives = 90/110 (81.82%), Query Frame = 1 Query: 85 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414 VTIRTRKFMTNRLL RKQ VI VLHPG+A V K E++EKLA+MY P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL K + SRKQ KERKNR Sbjct: 5 VTIRTRKFMTNRLLQRKQMVIGVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNR 113
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 1.597e-37 Identity = 77/115 (66.96%), Postives = 92/115 (80.00%), Query Frame = 1 Query: 70 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414 M + TIRTRKFMTNRLL+RKQ V DVLHPG+ VSK E++EKLA+MY V P+ +FVF F+T+FGGGKSTGF LIYD++D AKKFEPK+RL R+GL K +RKQ KERKNR Sbjct: 1 MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNR 114
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_ICTPU (40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 1.352e-36 Identity = 74/111 (66.67%), Postives = 90/111 (81.08%), Query Frame = 1 Query: 82 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414 +VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY P+ +FVF F+T FGGGK+TGF ++YDS+D AKK EPKYRL R+GL K + SRKQ KERKNR Sbjct: 4 SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFKTQFGGGKTTGFAMVYDSLDYAKKNEPKYRLARHGLYEKKKTSRKQRKERKNR 113
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_TAKRU (40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 1.765e-36 Identity = 74/110 (67.27%), Postives = 89/110 (80.91%), Query Frame = 1 Query: 85 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414 VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY P+ +FVF FRT FGGGK+TGF ++YDS+D AKK EPK+RL R+GL K + SRKQ KERKNR Sbjct: 5 VTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLARHGLFEKKKTSRKQRKERKNR 113
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_RHIRA (40S ribosomal protein S24 OS=Rhizomucor racemosus GN=RPS24 PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 4.348e-35 Identity = 72/114 (63.16%), Postives = 88/114 (77.19%), Query Frame = 1 Query: 73 ADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414 AD AVTIRTRKF+TNRLL RKQ V+DV+HPG ANVSK EL+ K+ +MY D + VF F+THFGGGK+TGF LIYD+V++ K FEPK+RL+R GL + RKQ KE+KNR Sbjct: 20 ADAAVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKA-DKEVVSVFGFKTHFGGGKTTGFALIYDNVEALKNFEPKHRLVRIGLAEAPKGGRKQRKEKKNR 132
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_ORYLA (40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 9.686e-35 Identity = 72/110 (65.45%), Postives = 87/110 (79.09%), Query Frame = 1 Query: 85 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414 VTIRTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY P+ +FVF FRT FGGGK+TGF ++YDS+D AKK EPK+RL +GL K + SRKQ ER+NR Sbjct: 5 VTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLATHGLYEKKKTSRKQRTERQNR 113
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_YEAST (40S ribosomal protein S24 OS=Saccharomyces cerevisiae GN=RPS24A PE=1 SV=3) HSP 1 Score: 144.821 bits (364), Expect = 1.265e-34 Identity = 75/112 (66.96%), Postives = 91/112 (81.25%), Query Frame = 1 Query: 82 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNR 414 AVTIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y + +++ VF FRT FGGGKS GFGL+Y+SV AKKFEP YRL+R GL KVEK SR+Q K++KNR Sbjct: 4 AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNR 114
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24B_SCHPO (40S ribosomal protein S24-B OS=Schizosaccharomyces pombe GN=rps24b PE=2 SV=3) HSP 1 Score: 144.821 bits (364), Expect = 1.265e-34 Identity = 72/113 (63.72%), Postives = 89/113 (78.76%), Query Frame = 1 Query: 79 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNR 414 +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK E++EKLA+MY D + F RTHFGGG+STGF LIYDS +S KKFEP YRL+R G ++K +R+Q K+RKNR Sbjct: 3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKT-DSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNR 114
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24A_SCHPO (40S ribosomal protein S24-A OS=Schizosaccharomyces pombe GN=rps24a PE=2 SV=3) HSP 1 Score: 140.969 bits (354), Expect = 1.827e-33 Identity = 68/113 (60.18%), Postives = 90/113 (79.65%), Query Frame = 1 Query: 79 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNR 414 +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK +L+EKL +MY D +++ F RTH+GGG++TGF LIYD V++ KKFEP YRL+R G ++K +R+Q K+RKNR Sbjct: 3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKT-DASAVQAFGLRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNR 114
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_PYRKO (30S ribosomal protein S24e OS=Pyrococcus kodakaraensis GN=rps24e PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.378e-11 Identity = 35/97 (36.08%), Postives = 54/97 (55.67%), Query Frame = 1 Query: 91 IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK 381 I+ + N+LL RK+ DVLH G S+ +K KL M D+ DPN+ + R++FG S G+ Y++ + EP+Y L+R+GL K E+ Sbjct: 3 IKVTEIRENKLLGRKEIYFDVLHEGEPTPSREAVKGKLVAMLDL-DPNTTVIQYIRSYFGSNVSKGYAKAYETRERMLYIEPEYILVRDGLVQKQEE 98 The following BLAST results are available for this feature:
BLAST of CX288784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288784 ID=CX288784; Name=CX288784; organism=Citrus clementina; type=EST; length=415bpback to top |