CX288784

Overview
NameCX288784
Unique NameCX288784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length415
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_THEGJ (30S ribosomal protein S24e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps24e PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.468e-11
Identity = 34/97 (35.05%), Postives = 56/97 (57.73%), Query Frame = 1
Query:   91 IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK 381
            I+  +   N+LL RK+   D++H G    S+  +K KLA M D+ DPN++ +   R++FG   S G+   Y++ +     EP+Y L+R+GL  K E+
Sbjct:    3 IKVTEIRENKLLGRKEIYFDIIHEGEPTPSREAVKGKLAAMLDL-DPNTMVLQYIRSYFGSHVSKGYAKAYETRERMLYIEPEYILLRDGLIQKEEE 98          
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_PYRFU (30S ribosomal protein S24e OS=Pyrococcus furiosus GN=rps24e PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.753e-11
Identity = 34/96 (35.42%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   91 IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVE 378
            IR ++   N+L+ RK+   ++ HPG    S+ ++K KL  M D+ +P +  +   R++FG   S G+   YDS +     EP+Y LIR+GL  K E
Sbjct:    3 IRIKEIKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRSYFGSYISKGYAKAYDSKERMLYIEPEYILIRDGLIEKKE 97          
The following BLAST results are available for this feature:
BLAST of CX288784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RS24_THEGJ7.468e-1135.0530S ribosomal protein S24e OS=Thermococcus gammato... [more]
RS24_PYRFU9.753e-1135.4230S ribosomal protein S24e OS=Pyrococcus furiosus ... [more]

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Properties
Property NameValue
Genbank descriptionC02004D03SK IF1 Citrus clementina cDNA clone C02004D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288784 ID=CX288784; Name=CX288784; organism=Citrus clementina; type=EST; length=415bp
TCATTGCCTAGTCGCGCCTCTCGTGCTATATCTTTGTCGAGGATTCAGCA
GACTTTTAACCAACCAACAATGGCGGACAAGGCTGTCACCATTCGAACTA
GGAAGTTCATGACCAACCGTCTCCTTTCCAGGAAGCAATTCGTTATTGAT
GTTCTTCATCCTGGCAGGGCCAATGTTTCCAAGGCTGAGTTGAAGGAGAA
GTTGGCAAGGATGTATGATGTGAAGGACCCCAACTCAATCTTTGTTTTTA
AGTTCCGAACTCACTTTGGAGGTGGGAAATCTACCGGCTTTGGTCTGATC
TATGATTCAGTTGACAGTGCTAAGAAGTTTGAGCCCAAGTACAGGCTTAT
CAGGAATGGACTTGATACCAAGGTAGAGAAGTCAAGGAAGCAGATGAAGG
AAAGGAAGAACAGGG
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