CX288785

Overview
NameCX288785
Unique NameCX288785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11435 contig Ccv1_Contig11435:160..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_ECO27 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.128e-13
Identity = 42/126 (33.33%), Postives = 66/126 (52.38%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG 437          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_ECO24 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.128e-13
Identity = 42/126 (33.33%), Postives = 66/126 (52.38%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG 437          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_PECCP (Bifunctional polymyxin resistance protein arnA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.779e-13
Identity = 44/126 (34.92%), Postives = 67/126 (53.17%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L +  ++I  LD+ +D I   L      G  R  F   +I  H+  +E  IK  D+ + L AI TP +Y   PL     +F + L +V+ C   NKR++  ST EVYG
Sbjct:  324 VLILGVNGFIGNHLTERLLRDDRYEIYGLDISSDAIARFL------GDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYG 443          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP7 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=arnA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.779e-13
Identity = 44/131 (33.59%), Postives = 68/131 (51.91%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGK 445
            + ++G  G IG+HL E++L +  ++I  LD+ +D I   L+        R  F   +I  H   +E  IK  D+ + L AI TP +Y   PL     +F + L +++ C + NKR+I  ST EVYG    K
Sbjct:  318 VLILGVNGFIGNHLTERLLQDDNYEIYGLDIGSDAISRFLD------CPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYNKRIIFPSTSEVYGMCTDK 442          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_ERWCT (Bifunctional polymyxin resistance protein arnA OS=Erwinia carotovora subsp. atroseptica GN=arnA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.779e-13
Identity = 44/126 (34.92%), Postives = 67/126 (53.17%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L +  ++I  LD+ +D I   L      G  R  F   +I  H+  +E  IK  D+ + L AI TP +Y   PL     +F + L +V+ C   NKR++  ST EVYG
Sbjct:  325 VLILGVNGFIGNHLTERLLRDDRYEIYGLDISSDAIARFL------GDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYG 444          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_SERP5 (Bifunctional polymyxin resistance protein arnA OS=Serratia proteamaculans (strain 568) GN=arnA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.630e-13
Identity = 45/126 (35.71%), Postives = 66/126 (52.38%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L +  + I  LD+ +D I   L      G  R  F   +I  H   +E  IK  D+ + L AI TP +Y   PL     +F + L +V+ C + NKR+I  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLRDDRYDIYGLDIGSDAISRFL------GNPRFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIIFPSTSEVYG 437          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_ECOL6 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O6 GN=arnA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.630e-13
Identity = 41/126 (32.54%), Postives = 66/126 (52.38%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L E  +++  LD+ +D I   +  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFMNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG 437          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_ECO81 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O81 (strain ED1a) GN=arnA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.630e-13
Identity = 41/126 (32.54%), Postives = 66/126 (52.38%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L E  +++  LD+ +D I   +  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFMNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG 437          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_SHESH (Bifunctional polymyxin resistance protein arnA OS=Shewanella sediminis (strain HAW-EB3) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.741e-13
Identity = 43/126 (34.13%), Postives = 71/126 (56.35%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIK-HLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++GA G IG+HL +++L +  ++I A+D+ + +I+ HL  P+     G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+ C + +KR+I  ST EVYG
Sbjct:  320 VLIMGANGFIGNHLTKRLLDDGKYEIYAMDMSSSQIEQHLSHPDFHFVEGDITIHNEWIEYH------IKKCDIVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRACVKYDKRIIFPSTSEVYG 439          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_PROMH (Bifunctional polymyxin resistance protein arnA OS=Proteus mirabilis (strain HI4320) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.191e-13
Identity = 42/126 (33.33%), Postives = 67/126 (53.17%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L +  + I  +D+ +  I+  +      G  R  F   ++  H   +E  IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLKDGNYDIYGMDIGSSAIERFI------GNPRFHFIEGDVSIHTEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRIIFPSTSEVYG 437          
The following BLAST results are available for this feature:
BLAST of CX288785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ARNA_ECO272.128e-1333.33Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO242.128e-1333.33Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PECCP2.779e-1334.92Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_KLEP72.779e-1333.59Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ERWCT2.779e-1334.92Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SERP53.630e-1335.71Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOL63.630e-1332.54Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO813.630e-1332.54Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHESH4.741e-1334.13Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PROMH6.191e-1333.33Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionC02004D04SK IF1 Citrus clementina cDNA clone C02004D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288785 ID=CX288785; Name=CX288785; organism=Citrus clementina; type=EST; length=514bp
GGCATGCGCAAGCGCGAGATTGGATCTGGATGGGAGGCCGATAAAGCCGA
TGACGATATGTATGATCGGCGCCGGCGGCTTGATCGGCTCTCATCTCTGC
GAAAAGATTCTCCTTGAGACCCCTCACAAAATTCTAGCACTCGACGTCTA
CAATGACAAGATCAAGCACTTGCTCGAACCGGAGTCACAGACTGGGGCCG
GCCGGATCCAGTTCCACCGACTCAACATCAAGCACGATTCTCGCCTCGAA
GGCCTCATCAAGATGGCAGATCTGACGATAAATCTGGCGGCGATCTGTAC
GCCGGCGGATTACAACACGCGGCCGTTGGACACGATCTACAGCAACTTTA
TTGACGCGCTTCCGGTGGTCAAGTACTGTTCGGAGAACAACAAGCGTTTG
ATTCACTTCTCTACTTGTGAAGTATATGGAAAGACCATTGGGAAGCTTTC
TTCCTAAAGATAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCTTAAA
GAAGATGCCTCCCC
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