CX288785

Overview
NameCX288785
Unique NameCX288785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_SALTY (Bifunctional polymyxin resistance protein arnA OS=Salmonella typhimurium GN=arnA PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 2 
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYG 437
[Close]
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_SALSV (Bifunctional polymyxin resistance protein arnA OS=Salmonella schwarzengrund (strain CVM19633) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 2 
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYG 437
[Close]
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_SALPC (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi C (strain RKS4594) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 2 
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYG 437
[Close]
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_SALPB (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 2 
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYG 437
[Close]
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_SALNS (Bifunctional polymyxin resistance protein arnA OS=Salmonella newport (strain SL254) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 2 
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYG 437
[Close]
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_SALHS (Bifunctional polymyxin resistance protein arnA OS=Salmonella heidelberg (strain SL476) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 2 
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYG 437
[Close]
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_SALG2 (Bifunctional polymyxin resistance protein arnA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 2 
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYG 437
[Close]
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_SALEP (Bifunctional polymyxin resistance protein arnA OS=Salmonella enteritidis PT4 (strain P125109) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 2 
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYG 437
[Close]
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_SALDC (Bifunctional polymyxin resistance protein arnA OS=Salmonella dublin (strain CT_02021853) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 2 
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYG 437
[Close]
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_SALCH (Bifunctional polymyxin resistance protein arnA OS=Salmonella choleraesuis GN=arnA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 2 
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYG 437
The following BLAST results are available for this feature:
BLAST of CX288785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ARNA_SALTY8.086e-1331.75Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALSV8.086e-1331.75Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPC8.086e-1331.75Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPB8.086e-1331.75Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALNS8.086e-1331.75Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALHS8.086e-1331.75Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALG28.086e-1331.75Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALEP8.086e-1331.75Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALDC8.086e-1331.75Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALCH8.086e-1331.75Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionC02004D04SK IF1 Citrus clementina cDNA clone C02004D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288785 ID=CX288785; Name=CX288785; organism=Citrus clementina; type=EST; length=514bp
GGCATGCGCAAGCGCGAGATTGGATCTGGATGGGAGGCCGATAAAGCCGA
TGACGATATGTATGATCGGCGCCGGCGGCTTGATCGGCTCTCATCTCTGC
GAAAAGATTCTCCTTGAGACCCCTCACAAAATTCTAGCACTCGACGTCTA
CAATGACAAGATCAAGCACTTGCTCGAACCGGAGTCACAGACTGGGGCCG
GCCGGATCCAGTTCCACCGACTCAACATCAAGCACGATTCTCGCCTCGAA
GGCCTCATCAAGATGGCAGATCTGACGATAAATCTGGCGGCGATCTGTAC
GCCGGCGGATTACAACACGCGGCCGTTGGACACGATCTACAGCAACTTTA
TTGACGCGCTTCCGGTGGTCAAGTACTGTTCGGAGAACAACAAGCGTTTG
ATTCACTTCTCTACTTGTGAAGTATATGGAAAGACCATTGGGAAGCTTTC
TTCCTAAAGATAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCTTAAA
GAAGATGCCTCCCC
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