CX288785

Overview
NameCX288785
Unique NameCX288785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11435 contig Ccv1_Contig11435:160..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_SALA4 (Bifunctional polymyxin resistance protein arnA OS=Salmonella agona (strain SL483) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYG 437          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAB (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 42/132 (31.82%), Postives = 69/132 (52.27%), Query Frame = 2
Query:   38 PIKPMTICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHL-LEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            P +   + ++G  G IG+HL E++L +  +++  +D+ +D I+ L  +P      G I  H         LE  +K  D+ + L AI TP +Y   PL     +F + L +V+YC +  KR++  ST EVYG
Sbjct:  314 PQRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMDIGSDAIERLKADPHFHFVEGDIGIH------SEWLEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYG 439          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_YERE8 (Bifunctional polymyxin resistance protein arnA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=arnA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.056e-12
Identity = 42/126 (33.33%), Postives = 67/126 (53.17%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L +  +++  LD+ +D I   L+ P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+ C + NKR++  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLRDNRYEVYGLDIGSDAICRFLDNPNFHFVEGDISIHSEWIEYH------IKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYG 437          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_SALTI (Bifunctional polymyxin resistance protein arnA OS=Salmonella typhi GN=arnA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.056e-12
Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLDEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYG 437          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_SALPK (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi A (strain AKU_12601) GN=arnA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.056e-12
Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLDEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYG 437          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_SALPA (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi A GN=arnA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.056e-12
Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLDEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYG 437          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAE (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa GN=arnA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.056e-12
Identity = 42/132 (31.82%), Postives = 69/132 (52.27%), Query Frame = 2
Query:   38 PIKPMTICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHL-LEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            P +   + ++G  G IG+HL E++L +  +++  +D+ +D I+ L  +P      G I  H         LE  +K  D+ + L AI TP +Y   PL     +F + L +V+YC +  KR++  ST EVYG
Sbjct:  314 PQRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMDIGSDAIERLKADPHFHFVEGDIGIH------SEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYG 439          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA8 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain LESB58) GN=arnA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.056e-12
Identity = 42/132 (31.82%), Postives = 69/132 (52.27%), Query Frame = 2
Query:   38 PIKPMTICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHL-LEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            P +   + ++G  G IG+HL E++L +  +++  +D+ +D I+ L  +P      G I  H         LE  +K  D+ + L AI TP +Y   PL     +F + L +V+YC +  KR++  ST EVYG
Sbjct:  314 PQRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMDIGSDAIERLKADPHFHFVEGDIGIH------SEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYG 439          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA7 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain PA7) GN=arnA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.056e-12
Identity = 42/132 (31.82%), Postives = 69/132 (52.27%), Query Frame = 2
Query:   38 PIKPMTICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHL-LEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            P +   + ++G  G IG+HL E++L +  +++  +D+ +D I+ L  +P      G I  H         LE  +K  D+ + L AI TP +Y   PL     +F + L +V+YC +  KR++  ST EVYG
Sbjct:  314 PQRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMDIGSDAIERLKADPHFHFVEGDIGIH------SEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYG 439          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_PHOLL (Bifunctional polymyxin resistance protein arnA OS=Photorhabdus luminescens subsp. laumondii GN=arnA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.056e-12
Identity = 42/126 (33.33%), Postives = 66/126 (52.38%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L +  + I  +D+ +  I+  +  P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLRDGNYDIYGMDIGSSAIERFISNPRFHFIEGDINIHTEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRIIFPSTSEVYG 437          
The following BLAST results are available for this feature:
BLAST of CX288785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ARNA_SALA48.086e-1331.75Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEAB8.086e-1331.82Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERE81.056e-1233.33Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALTI1.056e-1231.75Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPK1.056e-1231.75Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPA1.056e-1231.75Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEAE1.056e-1231.82Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEA81.056e-1231.82Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEA71.056e-1231.82Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PHOLL1.056e-1233.33Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionC02004D04SK IF1 Citrus clementina cDNA clone C02004D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288785 ID=CX288785; Name=CX288785; organism=Citrus clementina; type=EST; length=514bp
GGCATGCGCAAGCGCGAGATTGGATCTGGATGGGAGGCCGATAAAGCCGA
TGACGATATGTATGATCGGCGCCGGCGGCTTGATCGGCTCTCATCTCTGC
GAAAAGATTCTCCTTGAGACCCCTCACAAAATTCTAGCACTCGACGTCTA
CAATGACAAGATCAAGCACTTGCTCGAACCGGAGTCACAGACTGGGGCCG
GCCGGATCCAGTTCCACCGACTCAACATCAAGCACGATTCTCGCCTCGAA
GGCCTCATCAAGATGGCAGATCTGACGATAAATCTGGCGGCGATCTGTAC
GCCGGCGGATTACAACACGCGGCCGTTGGACACGATCTACAGCAACTTTA
TTGACGCGCTTCCGGTGGTCAAGTACTGTTCGGAGAACAACAAGCGTTTG
ATTCACTTCTCTACTTGTGAAGTATATGGAAAGACCATTGGGAAGCTTTC
TTCCTAAAGATAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCTTAAA
GAAGATGCCTCCCC
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