CX288785

Overview
NameCX288785
Unique NameCX288785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11435 contig Ccv1_Contig11435:160..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_SODGM (Bifunctional polymyxin resistance protein arnA OS=Sodalis glossinidius (strain morsitans) GN=arnA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.353e-12
Identity = 41/126 (32.54%), Postives = 67/126 (53.17%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L +  ++I  LD+  D I + ++ P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L ++++C +  KR+I  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLRDGNYEIYGLDIGTDAISRFMVNPLFHFVEGDISIHSEWIEYH------IKKCDIVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRHCVKYQKRIIFPSTSEVYG 437          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_ERWT9 (Bifunctional polymyxin resistance protein arnA OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=arnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.073e-12
Identity = 41/126 (32.54%), Postives = 66/126 (52.38%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L++   ++  LD+ +D I   +      G  R  F   +I  H   +E  IK  D+ + L AI TP +Y   PL     +F + L +++ C +  KR+I  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLVDDNFEVFGLDIGSDAIGRFI------GHERFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYKKRIIFPSTSEVYG 437          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_ENT38 (Bifunctional polymyxin resistance protein arnA OS=Enterobacter sp. (strain 638) GN=arnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.073e-12
Identity = 41/126 (32.54%), Postives = 65/126 (51.59%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L +   ++  LD+ +D I   +      G  R  F   +I  H   +E  IK  D+ + L AI TP +Y   PL     +F + L +++ C +  KR+I  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLQDDNFEVYGLDIGSDAISRFI------GNSRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYQKRIIFPSTSEVYG 437          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_AERHH (Bifunctional polymyxin resistance protein arnA OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.013e-12
Identity = 40/126 (31.75%), Postives = 66/126 (52.38%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLL-EPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L +  +++  LD+ +  +   +  P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+YC + +KR+I  ST EVYG
Sbjct:  320 VLILGVNGFIGNHLTERLLQDGGYEVYGLDIGSSAVDRFIGHPNFHFVEGDISIHTEWIEYH------IKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYHKRIIFPSTSEVYG 439          
The following BLAST results are available for this feature:
BLAST of CX288785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ARNA_SODGM2.353e-1232.54Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ERWT93.073e-1232.54Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ENT383.073e-1232.54Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_AERHH4.013e-1231.75Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionC02004D04SK IF1 Citrus clementina cDNA clone C02004D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288785 ID=CX288785; Name=CX288785; organism=Citrus clementina; type=EST; length=514bp
GGCATGCGCAAGCGCGAGATTGGATCTGGATGGGAGGCCGATAAAGCCGA
TGACGATATGTATGATCGGCGCCGGCGGCTTGATCGGCTCTCATCTCTGC
GAAAAGATTCTCCTTGAGACCCCTCACAAAATTCTAGCACTCGACGTCTA
CAATGACAAGATCAAGCACTTGCTCGAACCGGAGTCACAGACTGGGGCCG
GCCGGATCCAGTTCCACCGACTCAACATCAAGCACGATTCTCGCCTCGAA
GGCCTCATCAAGATGGCAGATCTGACGATAAATCTGGCGGCGATCTGTAC
GCCGGCGGATTACAACACGCGGCCGTTGGACACGATCTACAGCAACTTTA
TTGACGCGCTTCCGGTGGTCAAGTACTGTTCGGAGAACAACAAGCGTTTG
ATTCACTTCTCTACTTGTGAAGTATATGGAAAGACCATTGGGAAGCTTTC
TTCCTAAAGATAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCTTAAA
GAAGATGCCTCCCC
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