CX288800

Overview
NameCX288800
Unique NameCX288800
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA4_CHICK (Tubulin alpha-4 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 8.614e-84
Identity = 139/170 (81.76%), Postives = 158/170 (92.94%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RFDGALNVD+TEFQTNLVPYPRIHF L +YAP+IS+E+AYHEQLSVAEIT+S FEP++ M KCDPRHGKYMACC++YRGDVVPKDVN A+A IKTKR IQFVDWCPTG K GINYQPPTVVPGGDLA+VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV EG
Sbjct:  118 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISSERAYHEQLSVAEITSSCFEPNNQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRNIQFVDWCPTGVKVGINYQPPTVVPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEG 287          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA2_CAEEL (Tubulin alpha-2 chain OS=Caenorhabditis elegans GN=tba-2 PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 2.506e-83
Identity = 140/170 (82.35%), Postives = 157/170 (92.35%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RFDGALNVD+ EFQTNLVPYPRIHF L++Y P+ISAEKAYHE LSV++ITNS FEP++ M KCDPRHGKYMA CL+YRGDVVPKDVN A+A IKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKV RAVCM+SN+T++AE +SR+D+KFDLMYAKRAFVHWYVGEG
Sbjct:  241 RFDGALNVDLNEFQTNLVPYPRIHFPLAAYTPLISAEKAYHEALSVSDITNSCFEPANQMVKCDPRHGKYMAVCLLYRGDVVPKDVNTAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEG 410          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA2_HOMAM (Tubulin alpha-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 3.273e-83
Identity = 137/170 (80.59%), Postives = 158/170 (92.94%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF+GALNVD+TEFQTNLVPYPRIHF L++Y+P+ISAEKAYHEQLSV EIT++ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDV A++A +KTKRTIQFVDWCPTGFK GINYQPPTVVPG DLAKV RAVCM+SN+T++AE ++R+DHK DLMYAKRAFVHWYVGEG
Sbjct:  243 RFEGALNVDLTEFQTNLVPYPRIHFPLTTYSPIISAEKAYHEQLSVGEITSACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVTASIANVKTKRTIQFVDWCPTGFKVGINYQPPTVVPGADLAKVSRAVCMLSNTTAIAEAWARLDHKVDLMYAKRAFVHWYVGEG 412          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 9.524e-83
Identity = 140/170 (82.35%), Postives = 158/170 (92.94%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF+GALNVD+ EFQTNLVPYPRIHF L++YA +ISAEKAYHEQLSV EITN+ FE S+ M KCDPR GKYMACCL+YRGDVVPKDVNAA+A IKT+R+IQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEG
Sbjct:  118 RFNGALNVDLIEFQTNLVPYPRIHFPLTTYARIISAEKAYHEQLSVPEITNACFEFSNQMVKCDPRRGKYMACCLLYRGDVVPKDVNAAIAAIKTRRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 287          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 7.547e-80
Identity = 131/170 (77.06%), Postives = 155/170 (91.18%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RFDGALNVD+TEFQTNLVP+PRIHF L +YAP+IS+++AYHEQLSVAEIT+S FEP++ M KCDP+ GKYMACC++YRGDVVPKDVN A+A IKT R++QFVDWCPTGFK GINYQPP   PGGDLA+VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV EG
Sbjct:  240 RFDGALNVDLTEFQTNLVPFPRIHFPLVTYAPIISSDRAYHEQLSVAEITSSCFEPNNQMVKCDPQQGKYMACCMLYRGDVVPKDVNVAIAAIKTNRSLQFVDWCPTGFKVGINYQPPIPTPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEG 409          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA1_PNECA (Tubulin alpha chain OS=Pneumocystis carinii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.020e-76
Identity = 130/170 (76.47%), Postives = 151/170 (88.82%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RFDG+LNVD+ EFQTNLVPYPRIHF L +YAP+ISA KA+HE  SVAEITN+ FEP++ M KCDPR+GKYMA CL+YRGD+V KDVN AV++I+TKRTIQFVDWCPTGFK G+ YQPP  VP GDLAKV RAVCM+SN+TS+AE +SR+DHKFDLMY+KRAFVHWYVGEG
Sbjct:  243 RFDGSLNVDLNEFQTNLVPYPRIHFPLVTYAPLISAAKAHHEANSVAEITNACFEPNNQMVKCDPRNGKYMATCLLYRGDIVTKDVNCAVSSIRTKRTIQFVDWCPTGFKLGVCYQPPQYVPNGDLAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEG 412          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBAA_PNECA (Tubulin alpha chain (Fragment) OS=Pneumocystis carinii GN=TUB-A PE=3 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 5.062e-76
Identity = 131/170 (77.06%), Postives = 149/170 (87.65%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RFDG+LNVD+ EFQTNLVPYPRIHF L +YAPVISA KA HE  SV+EITN+ FEP++ M KCDPR+GKYMA CL+YRGDVV KDVNAAVA ++TKRTIQFVDWCPTGFK G+ YQPP  VP GDLAKV RAVCM+SN+TS+AE + R+DHKFDLMY+KRAFVHWYVGEG
Sbjct:   40 RFDGSLNVDLNEFQTNLVPYPRIHFPLVTYAPVISAAKAVHEANSVSEITNACFEPNNQMVKCDPRNGKYMATCLLYRGDVVTKDVNAAVAAVRTKRTIQFVDWCPTGFKLGVCYQPPQHVPHGDLAKVDRAVCMLSNTTSIAEAWPRLDHKFDLMYSKRAFVHWYVGEG 209          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 1.247e-74
Identity = 122/170 (71.76%), Postives = 151/170 (88.82%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF+G LNVD+ EFQTNLVPYPRIHF +++ AP+ISAEKAY EQLSV+++T S FE S+ + KCDPR GKYMACCL+YRGDVVPKDVN A+A +K++ ++QFVDWCPTGFK GINYQPP VVPGGDLA+VQRAVCM+SN+T++ E ++R+DHKFDLMYAK+AF+HWY+ EG
Sbjct:  250 RFEGPLNVDLIEFQTNLVPYPRIHFPITALAPIISAEKAYQEQLSVSDVTASCFEVSNQLVKCDPRLGKYMACCLLYRGDVVPKDVNEAIAAMKSRTSVQFVDWCPTGFKVGINYQPPAVVPGGDLARVQRAVCMLSNTTAIVEAWARLDHKFDLMYAKKAFLHWYITEG 419          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 278.485 bits (711), Expect = 1.247e-74
Identity = 128/170 (75.29%), Postives = 149/170 (87.65%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RFDG+LNVD+ EFQTNLVPYPRIHF L +Y+PVISA+KA HE  SV +IT S FEP++ M KCDPR+GKYMA CL+YRGDVVPK+ +AAVAT+KTKRTIQFVDWCPTGFK GI YQPP  VP GDLAKV RAVCM+SN+T+++E +S +DHKFDLMY+KRAFVHWYVGEG
Sbjct:  243 RFDGSLNVDLNEFQTNLVPYPRIHFPLVAYSPVISADKASHEANSVQDITMSCFEPNNQMVKCDPRNGKYMATCLLYRGDVVPKETHAAVATLKTKRTIQFVDWCPTGFKIGICYQPPQQVPNGDLAKVNRAVCMLSNTTAISEAWSALDHKFDLMYSKRAFVHWYVGEG 412          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.628e-74
Identity = 129/170 (75.88%), Postives = 147/170 (86.47%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RFDG+LNVD+ EFQTNLVPYPRIHF L +YAP++SA KA HE  SV EI+ S FEP+S M KCDPR+GKYMA CL+YRGDVVPKDV+ AVAT+KTKRTIQFVDWCPTGFK GI YQPP  VP GDLAKV RAVCM+SN+T++AE +S + HKFDLMY+KRAFVHWYVGEG
Sbjct:  243 RFDGSLNVDLNEFQTNLVPYPRIHFPLVAYAPIVSAAKAAHEANSVQEISMSCFEPNSQMVKCDPRNGKYMATCLLYRGDVVPKDVHQAVATLKTKRTIQFVDWCPTGFKIGICYQPPQNVPNGDLAKVNRAVCMLSNTTAIAEAWSALSHKFDLMYSKRAFVHWYVGEG 412          
The following BLAST results are available for this feature:
BLAST of CX288800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBA4_CHICK8.614e-8481.76Tubulin alpha-4 chain (Fragment) OS=Gallus gallus ... [more]
TBA2_CAEEL2.506e-8382.35Tubulin alpha-2 chain OS=Caenorhabditis elegans GN... [more]
TBA2_HOMAM3.273e-8380.59Tubulin alpha-2 chain OS=Homarus americanus PE=2 S... [more]
TBA3_CHICK9.524e-8382.35Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]
TBA2_CHICK7.547e-8077.06Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBA1_PNECA1.020e-7676.47Tubulin alpha chain OS=Pneumocystis carinii GN=TUB... [more]
TBAA_PNECA5.062e-7677.06Tubulin alpha chain (Fragment) OS=Pneumocystis car... [more]
TBAL3_MOUSE1.247e-7471.76Tubulin alpha chain-like 3 OS=Mus musculus GN=Tuba... [more]
TBA1_EMENI1.247e-7475.29Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]
TBA_MYCGR1.628e-7475.88Tubulin alpha chain OS=Mycosphaerella graminicola ... [more]

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Properties
Property NameValue
Genbank descriptionC02004E09SK IF1 Citrus clementina cDNA clone C02004E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288800 ID=CX288800; Name=CX288800; organism=Citrus clementina; type=EST; length=511bp
GAGGTTTGATGGTGCTTTGAATGTGGATGTGACTGAATTCCAAACCAACT
TGGTCCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTC
ATCTCAGCTGAGAAGGCCTACCATGAACAACTCTCAGTTGCTGAGATCAC
CAACAGTGCCTTTGAGCCCTCATCTATGATGGCCAAATGTGATCCTCGTC
ATGGCAAGTACATGGCTTGCTGCCTCATGTACCGTGGTGATGTTGTGCCC
AAGGATGTCAATGCAGCTGTTGCTACCATCAAGACCAAGCGTACAATCCA
ATTCGTCGACTGGTGCCCGACTGGGTTCAAGTGTGGTATCAACTACCAGC
CACCAACTGTTGTTCCTGGTGGTGACCTTGCCAAGGTGCAAAGGGCTGTT
TGCATGATCTCCAACTCCACCAGTGTGGCAGAGGTGTTCTCTCGCATTGA
CCACAAGTTTGATCTTATGTATGCAAAGCGTGCTTTCGTCCACTGGTATG
TTGGCGAGGGT
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