CX288800

Overview
NameCX288800
Unique NameCX288800
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2)

HSP 1 Score: 275.789 bits (704), Expect = 8.082e-74
Identity = 129/170 (75.88%), Postives = 145/170 (85.29%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RFDG+LNVD+ EFQTNLVPYPRIHF L +YAPVISA KA HE  SV E+T S FEP++ M KCDPRHGKYMA CL+YRGDVVP D +AAVAT+KTKRTIQFVDWCPTGFK GI YQPP  VP GDLAKV RAVCM+SN+T++AE +S +  KFDLMY+KRAFVHWYVGEG
Sbjct:  243 RFDGSLNVDLNEFQTNLVPYPRIHFPLVAYAPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYRGDVVPNDAHAAVATLKTKRTIQFVDWCPTGFKLGICYQPPHQVPNGDLAKVNRAVCMLSNTTAIAEAWSALSSKFDLMYSKRAFVHWYVGEG 412          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 1.800e-73
Identity = 124/170 (72.94%), Postives = 148/170 (87.06%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RFDGALNVD+ EFQTNLVPYPRIHF L++YAPVISA++A+HE LSV +IT+  FE ++ M KCDP  GKYMA CL+YRGDVVPKDVNAA++++K KR I FVDWCPTGFK GINYQ P  V GGDLAKV RAVCM+SN+T++AE ++R+DHKFDLMY+KRAFVHW+VGEG
Sbjct:  246 RFDGALNVDLNEFQTNLVPYPRIHFPLATYAPVISADRAHHEPLSVQDITHMCFEKANQMVKCDPSAGKYMAVCLLYRGDVVPKDVNAAISSVKAKRGINFVDWCPTGFKVGINYQAPITVEGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWFVGEG 415          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 2.351e-73
Identity = 117/170 (68.82%), Postives = 151/170 (88.82%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF+G LNVD+ EFQTNLVPYPRIHF ++++AP++SA+KAYHEQ SV++IT + FE S+ + KCDPR GKYMACCL+YRGDVVPK+VNAA+A  K++ ++QFVDWCPTGFK GIN +PPTV+PGGDLAKV R++CM+SN+T++ E ++R+DHKFDLMYAKRAF+HWY+ EG
Sbjct:  250 RFEGPLNVDLIEFQTNLVPYPRIHFPMTAFAPIVSADKAYHEQFSVSDITTACFESSNQLVKCDPRLGKYMACCLLYRGDVVPKEVNAAIAATKSRHSVQFVDWCPTGFKVGINNRPPTVMPGGDLAKVHRSICMLSNTTAIVEAWARLDHKFDLMYAKRAFLHWYLREG 419          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBAA_SCHCO (Tubulin alpha-1A chain OS=Schizophyllum commune GN=TUB-1A PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 1.167e-72
Identity = 123/170 (72.35%), Postives = 147/170 (86.47%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RFDG+LNVD+ EFQTNLVP+PRIHF L++ AP++S +KA HE  SVAE+T S FEP + M KCDPR GKYMAC L+YRGDVVPKD NAAVA IKTKRTIQFVDWCPTGFK GI  +PP  VPGGDLAKV+R++CM+SN+T+++  +SR+DHKFDL+Y+KRAFVHWYVGEG
Sbjct:  242 RFDGSLNVDLNEFQTNLVPFPRIHFPLATLAPIVSVDKAGHESNSVAEMTYSCFEPGNQMVKCDPRDGKYMACALLYRGDVVPKDTNAAVALIKTKRTIQFVDWCPTGFKLGICNEPPAHVPGGDLAKVKRSMCMLSNTTAISSAWSRLDHKFDLLYSKRAFVHWYVGEG 411          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA_SORMA (Tubulin alpha chain OS=Sordaria macrospora GN=TUBA PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 1.524e-72
Identity = 127/170 (74.71%), Postives = 144/170 (84.71%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RFDG+LNVD+ EFQTNLVPYPRIHF L +YAPVISA KA HE  SV E+T S FEP++ M KCDPRHGKYMA CL+Y GDVVP D +AAVA++KTKRTIQFVDWCPTGFK GI YQPP  VP GDLAKV RAVCM+SN+T++AE +S +  KFDLMY+KRAFVHWYVGEG
Sbjct:  243 RFDGSLNVDLNEFQTNLVPYPRIHFPLVAYAPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYGGDVVPNDAHAAVASLKTKRTIQFVDWCPTGFKLGICYQPPHQVPNGDLAKVNRAVCMLSNTTAIAEAWSALSSKFDLMYSKRAFVHWYVGEG 412          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA1_SCHPO (Tubulin alpha-1 chain OS=Schizosaccharomyces pombe GN=nda2 PE=2 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 2.600e-72
Identity = 122/170 (71.76%), Postives = 145/170 (85.29%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G+LNVD+ EFQTNLVPYPRIHF L +Y+P++SA KA+HE  SV EITN  FEP + M KCDPR G+YMA CL+YRGDV+P+DV AAV +IK++RTIQFVDWCPTGFK GI Y+PP  VPG  +AKV RAVCM+SN+TS+AE +SR+DHKFDLMY+KRAFVHWYVGEG
Sbjct:  247 RFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEG 416          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA2_SCHPO (Tubulin alpha-2 chain OS=Schizosaccharomyces pombe GN=tub1 PE=1 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 7.564e-72
Identity = 122/170 (71.76%), Postives = 144/170 (84.71%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF+G+LNVD+ EFQTNLVPYPRIHF L +YAP++SA KA+HE  SV EITN  FEP + M KCDPR G+YMA CL+YRGDV+P+DV AAV TIK KRTIQFVDWCPTGFK GI  +PP  + G ++AKV RAVCM+SN+TS+AE +SR+DHKFDLMY+KRAFVHWYVGEG
Sbjct:  243 RFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEG 412          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 9.879e-72
Identity = 126/170 (74.12%), Postives = 144/170 (84.71%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RFDG+LNVD+ EFQTNLVPYPRIHF L +Y+PVISA KA HE  SV E+T S FEP++ M KCDPRHGKYMA CL+YRGDVVP D +AAVAT+KTKRTIQFVDWCPTGFK GI YQ P  VP GDLAKV RAVCM+SN+T++AE +S +  KFDLM++KRAFVHWYVGEG
Sbjct:  243 RFDGSLNVDLNEFQTNLVPYPRIHFPLVAYSPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYRGDVVPNDAHAAVATLKTKRTIQFVDWCPTGFKLGICYQAPENVPNGDLAKVSRAVCMLSNTTAIAEAWSSLSLKFDLMHSKRAFVHWYVGEG 412          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA1_YEAST (Tubulin alpha-1 chain OS=Saccharomyces cerevisiae GN=TUB1 PE=1 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 4.151e-70
Identity = 120/170 (70.59%), Postives = 138/170 (81.18%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RFDG+LNVD+ EFQTNLVPYPRIHF L SY+PV+S  KA+HE  SV+EITN+ FEP + M KCDPR GKYMA CL+YRGDVV +DV  AV  +K K+T+Q VDWCPTGFK GI Y+PPT  P   LA V RAVCM+SN+TS+AE + RID KFDLMYAKRAFVHWYVGEG
Sbjct:  244 RFDGSLNVDLNEFQTNLVPYPRIHFPLVSYSPVLSKSKAFHESNSVSEITNACFEPGNQMVKCDPRDGKYMATCLLYRGDVVTRDVQRAVEQVKNKKTVQLVDWCPTGFKIGICYEPPTATPNSQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVHWYVGEG 413          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA_ASHGO (Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 1.208e-69
Identity = 118/170 (69.41%), Postives = 138/170 (81.18%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RFDG+LNVD+ EFQTNLVPYPRIHF L SYAP++S  KA+HE  SV EITN+ FEP + M KCDPR GKYMA CL+YRGDVV +DV  AVA +K K+T+Q VDWCPTGFK GI Y+PPT  P   L+ V RAVCM+SN+T++A+ + RID KFDLMYAKRAFVHWYVGEG
Sbjct:  245 RFDGSLNVDLNEFQTNLVPYPRIHFPLVSYAPILSKSKAHHESNSVGEITNACFEPGNQMVKCDPRVGKYMATCLLYRGDVVTRDVQTAVAQVKNKKTVQLVDWCPTGFKIGICYEPPTATPNSQLSSVSRAVCMLSNTTAIADAWKRIDRKFDLMYAKRAFVHWYVGEG 414          
The following BLAST results are available for this feature:
BLAST of CX288800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBA2_NEUCR8.082e-7475.88Tubulin alpha-B chain OS=Neurospora crassa GN=tba-... [more]
TBA8_CAEEL1.800e-7372.94Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]
TBAL3_HUMAN2.351e-7368.82Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBAA_SCHCO1.167e-7272.35Tubulin alpha-1A chain OS=Schizophyllum commune GN... [more]
TBA_SORMA1.524e-7274.71Tubulin alpha chain OS=Sordaria macrospora GN=TUBA... [more]
TBA1_SCHPO2.600e-7271.76Tubulin alpha-1 chain OS=Schizosaccharomyces pombe... [more]
TBA2_SCHPO7.564e-7271.76Tubulin alpha-2 chain OS=Schizosaccharomyces pombe... [more]
TBA_GIBZE9.879e-7274.12Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=... [more]
TBA1_YEAST4.151e-7070.59Tubulin alpha-1 chain OS=Saccharomyces cerevisiae ... [more]
TBA_ASHGO1.208e-6969.41Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC02004E09SK IF1 Citrus clementina cDNA clone C02004E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288800 ID=CX288800; Name=CX288800; organism=Citrus clementina; type=EST; length=511bp
GAGGTTTGATGGTGCTTTGAATGTGGATGTGACTGAATTCCAAACCAACT
TGGTCCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTC
ATCTCAGCTGAGAAGGCCTACCATGAACAACTCTCAGTTGCTGAGATCAC
CAACAGTGCCTTTGAGCCCTCATCTATGATGGCCAAATGTGATCCTCGTC
ATGGCAAGTACATGGCTTGCTGCCTCATGTACCGTGGTGATGTTGTGCCC
AAGGATGTCAATGCAGCTGTTGCTACCATCAAGACCAAGCGTACAATCCA
ATTCGTCGACTGGTGCCCGACTGGGTTCAAGTGTGGTATCAACTACCAGC
CACCAACTGTTGTTCCTGGTGGTGACCTTGCCAAGGTGCAAAGGGCTGTT
TGCATGATCTCCAACTCCACCAGTGTGGCAGAGGTGTTCTCTCGCATTGA
CCACAAGTTTGATCTTATGTATGCAAAGCGTGCTTTCGTCCACTGGTATG
TTGGCGAGGGT
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