CX288800

Overview
NameCX288800
Unique NameCX288800
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA4_DROME (Tubulin alpha-4 chain OS=Drosophila melanogaster GN=alphaTub67C PE=1 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 3.514e-69
Identity = 115/170 (67.65%), Postives = 143/170 (84.12%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G++NVD+ EFQTNLVP+PRIHF L +YAP++SAE++ HEQ ++  +TN+ FE S+MM KCDPR GK+MACC++YRGDVVPKDVNAAV+ IK+KR IQFVDWCPTGFK GINY+ P  VP GDLAK  RA CM+SN+T+++  FS + +KFDLM+ KRAFVHWYVGEG
Sbjct:  254 RFSGSMNVDLNEFQTNLVPFPRIHFPLVAYAPLMSAERSAHEQHAITTLTNACFESSNMMVKCDPRAGKFMACCMLYRGDVVPKDVNAAVSAIKSKRHIQFVDWCPTGFKIGINYEKPAFVPDGDLAKTSRACCMLSNTTAISVAFSNLSYKFDLMFKKRAFVHWYVGEG 423          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 5.993e-69
Identity = 118/169 (69.82%), Postives = 142/169 (84.02%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGE 508
            RFDG+LNVD+ EFQTNLVP+PRIHF L+SYAP++SA +  HEQ SV E+T S FE  + M KCD + GKYMACCL+YRGDVVPKD  AAVA+IKTKRTIQFVDWCPTGFK G+  + P  VPGGDLAKV R++CM+SN+T++A  ++R+D+KFDLMY KRAFVHWYVGE
Sbjct:  241 RFDGSLNVDLNEFQTNLVPFPRIHFPLASYAPLLSAPRRQHEQNSVEEMTFSCFESGNQMVKCDAKDGKYMACCLLYRGDVVPKDTQAAVASIKTKRTIQFVDWCPTGFKLGVCNEAPATVPGGDLAKVPRSLCMLSNTTAIAAAWNRLDYKFDLMYRKRAFVHWYVGE 409          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA_CANAL (Tubulin alpha chain OS=Candida albicans GN=TUB1 PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 7.828e-69
Identity = 119/170 (70.00%), Postives = 138/170 (81.18%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RFDG+LNVD+ EFQTNLVPYPRIHF L SYAPV S  +A HE  SV+EIT S FEP + M KCDPR GKYMA CL+YRGDVV +DV  AVA +K+K+T+Q VDWCPTGFK GI YQPPT + G +LA   RAVCM+SN+T++AE + RID KFDLMY+KRAFVHWYVGEG
Sbjct:  244 RFDGSLNVDLNEFQTNLVPYPRIHFPLVSYAPVFSKSRATHEANSVSEITQSCFEPGNQMVKCDPRTGKYMATCLLYRGDVVTRDVQNAVAQVKSKKTVQLVDWCPTGFKIGICYQPPTAIKGSELASASRAVCMLSNTTAIAEAWRRIDRKFDLMYSKRAFVHWYVGEG 413          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA3_YEAST (Tubulin alpha-3 chain OS=Saccharomyces cerevisiae GN=TUB3 PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 1.335e-68
Identity = 116/170 (68.24%), Postives = 140/170 (82.35%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RFDG+LNVD+ EFQTNLVPYPRIHF L SYAP++S ++A HE  SV+EITN+ FEP + M KCDP  GKYMA CL+YRGDVV +DV  AV  +K K+T+Q VDWCPTGFK GI Y+PP+V+P  +LA V RAVCM+SN+T++A+ + RID KFDLMYAKRAFVHWYVGEG
Sbjct:  244 RFDGSLNVDLNEFQTNLVPYPRIHFPLVSYAPILSKKRATHESNSVSEITNACFEPGNQMVKCDPTKGKYMANCLLYRGDVVTRDVQRAVEQVKNKKTVQMVDWCPTGFKIGICYEPPSVIPSSELANVDRAVCMLSNTTAIADAWKRIDQKFDLMYAKRAFVHWYVGEG 413          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 1.130e-67
Identity = 120/169 (71.01%), Postives = 143/169 (84.62%), Query Frame = 2
Query:    5 FDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            FD ALNVD+ EFQTNLVPYPRIHF L+SY+PV+SA KA HE  SV E+T   FEP++ M KCDPR+GKYMA CL+YRGDVVPKDV+A  AT+KTKRT+QFVD  PTGFK GI YQPPT+VP GDLAKV RA CM+SN+T+++E ++ + HKFDL+Y+KRAFVHWYVGEG
Sbjct:  245 FDCALNVDLNEFQTNLVPYPRIHFPLASYSPVVSAGKASHESNSVMEVTIVCFEPNNQMVKCDPRNGKYMATCLLYRGDVVPKDVHAVAATLKTKRTVQFVDLQPTGFKIGICYQPPTMVPNGDLAKVNRA-CMLSNTTAISEAWTALSHKFDLIYSKRAFVHWYVGEG 412          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA_ENCCU (Tubulin alpha chain OS=Encephalitozoon cuniculi GN=TUB1 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 1.805e-65
Identity = 111/170 (65.29%), Postives = 141/170 (82.94%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G+LNVD+TEFQTNLVPYPRIHF L +Y+P++S EKA HE+LSV EITN+ FEP + M +CD R GKYMACCL++RGDV PK+ N A A +K KRT QFV+WCPTGFK GIN + PTV+ G  +A+V RAVC +SN+T+++E + R+++KFDLM++KRAFVHWYVGEG
Sbjct:  239 RFPGSLNVDLTEFQTNLVPYPRIHFPLVAYSPMLSKEKAAHEKLSVQEITNACFEPQNQMVRCDTRKGKYMACCLLFRGDVNPKEANNATANVKAKRTNQFVEWCPTGFKVGINSRKPTVLDGEAMAEVSRAVCALSNTTAISEAWKRLNNKFDLMFSKRAFVHWYVGEG 408          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3)

HSP 1 Score: 239.195 bits (609), Expect = 8.383e-63
Identity = 111/175 (63.43%), Postives = 136/175 (77.71%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVP-----GGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RFDGALNVD+ EFQTNLVP+PR+H+ L SYAPVISA K+ HE    +E+T   FEP++ M  CDPR+GKYMA  L+YRGDVVP+D +AAVA +K K +   V+WCPTGFK GIN+Q P  VP      G LA V R+V M+SN+T++AE +SR+DHKFDLMY+KRAFVHWYVGEG
Sbjct:  244 RFDGALNVDLNEFQTNLVPFPRVHYPLISYAPVISATKSAHESFKTSELTLQCFEPNNQMVVCDPRNGKYMAVALLYRGDVVPRDTSAAVAALKAKSSFNLVEWCPTGFKIGINHQKPMSVPTASPADGGLASVDRSVSMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEG 418          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 2.439e-62
Identity = 106/170 (62.35%), Postives = 134/170 (78.82%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RFDGALNVD+ EFQTNLVP+PRIH+ L SYAPVIS+ ++ HE   V ++T    EP++ M  CDPR+GKYMA  L+YRGD VP+D   A+A++K K +   V+WCPTGFK GINYQ P  VPG +LA V R+V M+SN+T+++E +SR+DHKFDLMY+KRAFVHWYVGEG
Sbjct:  245 RFDGALNVDLNEFQTNLVPFPRIHYPLISYAPVISSNRSSHESFKVQDLTLQCAEPNNQMVVCDPRNGKYMAVALLYRGDCVPRDCTQAIASLKAKASFNLVEWCPTGFKVGINYQKPARVPGSELAPVDRSVSMLSNTTAISEAWSRLDHKFDLMYSKRAFVHWYVGEG 414          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA_LYTPI (Tubulin alpha chain (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 4.160e-62
Identity = 104/122 (85.25%), Postives = 117/122 (95.90%), Query Frame = 2
Query:  146 ITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            ITN+ FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEG
Sbjct:    1 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 122          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA_ENCHE (Tubulin alpha chain (Fragment) OS=Encephalitozoon hellem GN=TUB1 PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 5.433e-62
Identity = 107/164 (65.24%), Postives = 135/164 (82.32%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVH 493
            RF G+LNVD+TEFQTNLVPYPRIHF L +Y+P++S EKA HE+LSV EITN+ FEP S M +CD R GKYMACCL++RGDV PKD N A A +K KRT QFV+WCPTGFK GIN + PTV+ G  +A+V RAVC +SN+T+++E + R+++KFDLM++KRAFVH
Sbjct:  217 RFPGSLNVDLTEFQTNLVPYPRIHFPLVAYSPMLSKEKAAHEKLSVQEITNACFEPQSQMVRCDTRKGKYMACCLLFRGDVNPKDANTATANVKAKRTNQFVEWCPTGFKVGINSRKPTVLDGEAMAEVSRAVCALSNTTAISEAWKRLNNKFDLMFSKRAFVH 380          
The following BLAST results are available for this feature:
BLAST of CX288800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBA4_DROME3.514e-6967.65Tubulin alpha-4 chain OS=Drosophila melanogaster G... [more]
TBAB_SCHCO5.993e-6969.82Tubulin alpha-1B chain OS=Schizophyllum commune GN... [more]
TBA_CANAL7.828e-6970.00Tubulin alpha chain OS=Candida albicans GN=TUB1 PE... [more]
TBA3_YEAST1.335e-6868.24Tubulin alpha-3 chain OS=Saccharomyces cerevisiae ... [more]
TBA_AJECA1.130e-6771.01Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]
TBA_ENCCU1.805e-6565.29Tubulin alpha chain OS=Encephalitozoon cuniculi GN... [more]
TBA1_NEUCR8.383e-6363.43Tubulin alpha-A chain OS=Neurospora crassa GN=tba-... [more]
TBA2_EMENI2.439e-6262.35Tubulin alpha-2 chain OS=Emericella nidulans GN=tu... [more]
TBA_LYTPI4.160e-6285.25Tubulin alpha chain (Fragment) OS=Lytechinus pictu... [more]
TBA_ENCHE5.433e-6265.24Tubulin alpha chain (Fragment) OS=Encephalitozoon ... [more]

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Properties
Property NameValue
Genbank descriptionC02004E09SK IF1 Citrus clementina cDNA clone C02004E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288800 ID=CX288800; Name=CX288800; organism=Citrus clementina; type=EST; length=511bp
GAGGTTTGATGGTGCTTTGAATGTGGATGTGACTGAATTCCAAACCAACT
TGGTCCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTC
ATCTCAGCTGAGAAGGCCTACCATGAACAACTCTCAGTTGCTGAGATCAC
CAACAGTGCCTTTGAGCCCTCATCTATGATGGCCAAATGTGATCCTCGTC
ATGGCAAGTACATGGCTTGCTGCCTCATGTACCGTGGTGATGTTGTGCCC
AAGGATGTCAATGCAGCTGTTGCTACCATCAAGACCAAGCGTACAATCCA
ATTCGTCGACTGGTGCCCGACTGGGTTCAAGTGTGGTATCAACTACCAGC
CACCAACTGTTGTTCCTGGTGGTGACCTTGCCAAGGTGCAAAGGGCTGTT
TGCATGATCTCCAACTCCACCAGTGTGGCAGAGGTGTTCTCTCGCATTGA
CCACAAGTTTGATCTTATGTATGCAAAGCGTGCTTTCGTCCACTGGTATG
TTGGCGAGGGT
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