CX288800
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA_DICDI (Tubulin alpha chain OS=Dictyostelium discoideum GN=tubA PE=1 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 1.210e-61 Identity = 104/172 (60.47%), Postives = 137/172 (79.65%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK--RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G LN+D+ + QTNLVP+PR+HF+L SYAPVIS EKA+HE ++V IT++ F ++MAKC P GKYMACCLMYRGD+VPK+ AV I+++ R + FVDW PTGFKCGIN Q P ++A+V+++VCM+SN+T++++VFSRI+HKFDLM+ KRAFVHWYVGEG Sbjct: 250 RFPGQLNLDINDIQTNLVPFPRLHFVLCSYAPVISREKAHHETITVDNITSAVFSEKNIMAKCQPNLGKYMACCLMYRGDIVPKEAQKAVQNIRSEKSRNVSFVDWSPTGFKCGINNQAPVSTKDSEMAEVKKSVCMLSNTTAISQVFSRINHKFDLMFVKRAFVHWYVGEG 421
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1) HSP 1 Score: 233.417 bits (594), Expect = 4.600e-61 Identity = 106/175 (60.57%), Postives = 138/175 (78.86%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK--RTIQFVDWCPTGFKCGINYQPPTVV---PGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G LN+D+ + QTNLVP+PR+HF+L SYAPVIS EK+ HE ++V ITNS F +++MAKC P GKYMACCLMYRG++VPK+ AV I+ + +T+ FVDW PTGFKCGIN PT V G ++A+ +++VCM+SN+T++++VFSRI+HKFDLMY KRAFVHWYVGEG Sbjct: 152 RFPGPLNLDINDIQTNLVPFPRLHFVLCSYAPVISKEKSEHENITVDAITNSVFSENNIMAKCQPHLGKYMACCLMYRGNIVPKEAQKAVQNIRNEKSKTVSFVDWSPTGFKCGINNSKPTTVLGENGDNMARTEKSVCMLSNTTAISQVFSRINHKFDLMYIKRAFVHWYVGEG 326
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA6_NAEGR (Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA6 PE=2 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 2.137e-58 Identity = 103/170 (60.59%), Postives = 136/170 (80.00%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G+LNVD+ E+QTNLVPYPRIHFMLSS AP+IS ++ Y+ + +VAE+T+S FE +MMAKC+PR GKY+A CLMYRGDVV K+V AV +K+K IQFVDW P FK G+N Q PTV+P + A+V+R+ MISN+T++++VF R++ KFDL+YAKRA+VH +V EG Sbjct: 241 RFSGSLNVDMNEYQTNLVPYPRIHFMLSSLAPMISRQENYYHENNVAELTSSVFEADNMMAKCNPRDGKYIASCLMYRGDVVNKEVTDAVKNVKSKANIQFVDWSPCAFKIGVNSQKPTVLPDSEFAQVERSCAMISNNTAISQVFERMNDKFDLLYAKRAYVHHFVSEG 410
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 1.531e-56 Identity = 108/175 (61.71%), Postives = 129/175 (73.71%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG----GDLAKVQRAVCMISNSTSVAEVFSRID-HKFDLMYAKRAFVHWYVGEG 511 RFDGALNVD+ EFQTNLVPYPRIH+ L SYAPVIS K+ HE V ++T FEP++ M CDPR+GKYMA L+YRGD VP+D NAA+A +K K + V+WCPTGFK GINYQ P VP G LA V R+V M+SN+T++ E +S+ KFDLM AKRAFVHWYVGEG Sbjct: 244 RFDGALNVDLNEFQTNLVPYPRIHYPLISYAPVISGFKSAHESFKV-QLTFQCFEPNNQMVVCDPRNGKYMAVALLYRGDAVPRDCNAAIAALKAKSSFNLVEWCPTGFKLGINYQKPMAVPAAPGDGGLAPVDRSVSMLSNTTAMPEAWSKTGITKFDLMSAKRAFVHWYVGEG 417
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1) HSP 1 Score: 214.927 bits (546), Expect = 1.693e-55 Identity = 96/171 (56.14%), Postives = 127/171 (74.27%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF+G LNVD+ EF TNLVP+PR HF + SYAP+++ EKA + LSV E+T+S F+P+S+M +CD GK+M+CC+MYRGDV ++VN AV+ IK + T+ FV WCP FKCGIN QP T VPG A R+ CMI+N T++ +VF +++ FDLM+ KRAFVH YVGEG Sbjct: 248 RFEGTLNVDLNEFPTNLVPFPRDHFAMMSYAPIVTPEKAIRQTLSVQELTSSLFDPNSLMIQCDDINKGKFMSCCMMYRGDVSSREVNLAVSGIKKQNTVPFVGWCPCSFKCGINSQPATAVPGSSYASTARSACMIANHTAMCQVFQKVNQNFDLMFGKRAFVHHYVGEG 418
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_ONCGI (Tubulin beta chain OS=Onchocerca gibsoni GN=TBB PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 2.810e-34 Identity = 64/170 (37.65%), Postives = 99/170 (58.24%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G LN D+ + N+VP+PR+HF + +AP+ S + ++VAE+T F+ +MMA CDPRHG+Y+ ++RG + KDV+ + I+ K + FVDW P K + PP ++ A I NST++ E+F R+ +F M+ ++AF+HWY GEG Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRSNQQYRAVTVAELTQQLFDAKNMMAACDPRHGRYLTAAAIFRGRMSMKDVDEQMLNIQNKNSAYFVDWIPNNVKTAVCDIPP--------RDLKMAATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEG 402
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB4_CAEEL (Tubulin beta-4 chain OS=Caenorhabditis elegans GN=tbb-4 PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 2.379e-33 Identity = 63/170 (37.06%), Postives = 98/170 (57.65%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G LN D+ + N+VP+PR+HF + +AP+ S + L+V E+T F+ +MMA CDPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + PP V+ A + NST++ E+F RI +F M+ ++AF+HWY GEG Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP--------RGVKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEG 402
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB7_CHICK (Tubulin beta-7 chain OS=Gallus gallus PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 4.058e-33 Identity = 63/170 (37.06%), Postives = 99/170 (58.24%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G LN D+ + N+VP+PR+HF + +AP+ S + L+V E+T F+ +MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP ++ AV I NST++ E+F RI +F M+ ++AF+HWY GEG Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEG 402
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB5_XENTR (Tubulin beta chain OS=Xenopus tropicalis GN=tubb PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 4.058e-33 Identity = 63/170 (37.06%), Postives = 99/170 (58.24%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G LN D+ + N+VP+PR+HF + +AP+ S + L+V E+T F+ +MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP ++ AV I NST++ E+F RI +F M+ ++AF+HWY GEG Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEG 402
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB5_XENLA (Tubulin beta chain OS=Xenopus laevis GN=tubb PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 4.058e-33 Identity = 63/170 (37.06%), Postives = 99/170 (58.24%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G LN D+ + N+VP+PR+HF + +AP+ S + L+V E+T F+ +MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP ++ AV I NST++ E+F RI +F M+ ++AF+HWY GEG Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEG 402 The following BLAST results are available for this feature:
BLAST of CX288800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 403
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288800 ID=CX288800; Name=CX288800; organism=Citrus clementina; type=EST; length=511bpback to top |