CX288800
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA2_ORYSJ (Tubulin alpha-2 chain OS=Oryza sativa subsp. japonica GN=TUBA PE=2 SV=1) HSP 1 Score: 344.739 bits (883), Expect = 1.417e-94 Identity = 165/170 (97.06%), Postives = 167/170 (98.24%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RFDGALNVDV EFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNSTSV EVFSRID KFDLMY+KRAFVHWYVGEG Sbjct: 243 RFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDIKFDLMYSKRAFVHWYVGEG 412
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA_PLAYO (Tubulin alpha chain OS=Plasmodium yoelii yoelii GN=PY01155 PE=2 SV=2) HSP 1 Score: 343.584 bits (880), Expect = 3.156e-94 Identity = 161/170 (94.71%), Postives = 168/170 (98.82%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV+SAEKAYHEQLSV+EITNSAFEP++MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKV RAVCMISNST++AEVFSR+D KFDLMYAKRAFVHWYVGEG Sbjct: 243 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVVSAEKAYHEQLSVSEITNSAFEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDQKFDLMYAKRAFVHWYVGEG 412
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA_PLAFK (Tubulin alpha chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1) HSP 1 Score: 343.584 bits (880), Expect = 3.156e-94 Identity = 161/170 (94.71%), Postives = 168/170 (98.82%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV+SAEKAYHEQLSV+EITNSAFEP++MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKV RAVCMISNST++AEVFSR+D KFDLMYAKRAFVHWYVGEG Sbjct: 243 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVVSAEKAYHEQLSVSEITNSAFEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDQKFDLMYAKRAFVHWYVGEG 412
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1) HSP 1 Score: 341.658 bits (875), Expect = 1.199e-93 Identity = 159/170 (93.53%), Postives = 166/170 (97.65%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RFDGA+NVD+TEFQTNLVPYPRIHFMLSSYAPVISA KAYHEQLSV EITN+ FEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYVGEG Sbjct: 243 RFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 412
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBAD_PHYPO (Tubulin alpha-1A chain OS=Physarum polycephalum GN=ALTA PE=1 SV=1) HSP 1 Score: 341.273 bits (874), Expect = 1.566e-93 Identity = 158/170 (92.94%), Postives = 167/170 (98.24%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RFDGALNVD+TEFQTNLVPYPRIHFML SYAPVISAEKAYHEQL+VAEITNS FEP++MMAKCDPRHGKYMACCLMYRGDVVPKDVNA+VA IKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCM+SN+T++AEVFSRIDHKFDLMYAKRAFVHWYVGEG Sbjct: 243 RFDGALNVDITEFQTNLVPYPRIHFMLCSYAPVISAEKAYHEQLTVAEITNSVFEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNASVAVIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEG 412
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA2_ANEPH (Tubulin alpha-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBA2 PE=2 SV=1) HSP 1 Score: 341.273 bits (874), Expect = 1.566e-93 Identity = 161/170 (94.71%), Postives = 166/170 (97.65%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISA KAYHEQLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAK AFVHWYVGEG Sbjct: 159 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKLAFVHWYVGEG 328
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA2_STYLE (Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 SV=1) HSP 1 Score: 340.887 bits (873), Expect = 2.046e-93 Identity = 164/170 (96.47%), Postives = 167/170 (98.24%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RFDGALNVDVTEFQTNLVPYPRIHFMLSS APVISAEKAYHEQLSVAEITNSAFEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVP GDLAKV RAVCMISNST++AEVFSRIDHKFDLMYAKRAFVHWYVGEG Sbjct: 243 RFDGALNVDVTEFQTNLVPYPRIHFMLSS-APVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPSGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEG 411
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBAE_PHYPO (Tubulin alpha-2B chain OS=Physarum polycephalum GN=ALTBE PE=2 SV=1) HSP 1 Score: 340.117 bits (871), Expect = 3.489e-93 Identity = 157/170 (92.35%), Postives = 168/170 (98.82%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RFDGALNVD+TEFQTNLVPYPRIHFML+SYAPVISAEKA+HEQLSVAE+TN+ F+PSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVA IKTKRTIQFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRA+CMISN+T++AEVFSRIDHKFDLMYAKRAFVHWYVGEG Sbjct: 243 RFDGALNVDITEFQTNLVPYPRIHFMLASYAPVISAEKAFHEQLSVAELTNTVFDPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAVIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRALCMISNTTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEG 412
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA_AVESA (Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 SV=1) HSP 1 Score: 339.347 bits (869), Expect = 5.952e-93 Identity = 160/170 (94.12%), Postives = 166/170 (97.65%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RFDGA+NVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRT+QFVD CPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYVGEG Sbjct: 243 RFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVVTIKTKRTVQFVDXCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 412
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBA2_CHLRE (Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii GN=TUBA2 PE=1 SV=1) HSP 1 Score: 338.961 bits (868), Expect = 7.773e-93 Identity = 157/170 (92.35%), Postives = 166/170 (97.65%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RFDGALNVD+TEFQTNLVPYPRIHFMLSSYAP+ISAEKAYHEQLSVAEITN+AFEP+SMM KCDP HGKYMACCLMYRGDVVPKDVNA+VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG DLAKVQRAVCMISNST++ E+FSR+DHKFDLMYAKRAFVHWYVGEG Sbjct: 243 RFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMVKCDPLHGKYMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGVDLAKVQRAVCMISNSTAIGEIFSRLDHKFDLMYAKRAFVHWYVGEG 412 The following BLAST results are available for this feature:
BLAST of CX288800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 403
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288800 ID=CX288800; Name=CX288800; organism=Citrus clementina; type=EST; length=511bpback to top |