CX288800
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_POLAG (Tubulin beta chain OS=Polytomella agilis GN=TUBB1 PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 9.354e-30 Identity = 56/170 (32.94%), Postives = 95/170 (55.88%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G LN D+ + NL+P+PR+HF + + P+ S + L+V E+T ++ +MM DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP ++ + I NST++ E+F R+ +F M+ ++AF+HWY GEG Sbjct: 241 RFPGQLNADLRKLAVNLIPFPRLHFFMVGFTPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPP--------KGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEG 402
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_CHLRE (Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinhardtii GN=TUBB1 PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 9.354e-30 Identity = 56/170 (32.94%), Postives = 95/170 (55.88%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G LN D+ + NL+P+PR+HF + + P+ S + L+V E+T ++ +MM DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP ++ + I NST++ E+F R+ +F M+ ++AF+HWY GEG Sbjct: 241 RFPGQLNADLRKLAVNLIPFPRLHFFMVGFTPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPP--------KGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEG 402
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_CHLIN (Tubulin beta chain OS=Chlamydomonas incerta GN=TUBB PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 9.354e-30 Identity = 56/170 (32.94%), Postives = 95/170 (55.88%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G LN D+ + NL+P+PR+HF + + P+ S + L+V E+T ++ +MM DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP ++ + I NST++ E+F R+ +F M+ ++AF+HWY GEG Sbjct: 241 RFPGQLNADLRKLAVNLIPFPRLHFFMVGFTPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPP--------KGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEG 402
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_ACHKL (Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 9.354e-30 Identity = 59/170 (34.71%), Postives = 95/170 (55.88%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G LN V + NL+P+PR+HF + +AP+ S + L+V E+T F+ +MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + PP ++ + I NST++ E+F R+ +F M+ ++AF+HWY GEG Sbjct: 240 RFPGQLN-SVLKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQQFDAKNMMCAADPRHGRYLTAACMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKASVCDIPP--------KGLKMSTTFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEG 400
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB1_VOLCA (Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 9.354e-30 Identity = 56/170 (32.94%), Postives = 95/170 (55.88%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G LN D+ + NL+P+PR+HF + + P+ S + L+V E+T ++ +MM DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP ++ + I NST++ E+F R+ +F M+ ++AF+HWY GEG Sbjct: 241 RFPGQLNADLRKLAVNLIPFPRLHFFMVGFTPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPP--------KGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEG 402
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_PNECA (Tubulin beta chain OS=Pneumocystis carinii GN=TUB-B PE=2 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.222e-29 Identity = 60/170 (35.29%), Postives = 96/170 (56.47%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G LN D+ + N+VP+PR+HF + +AP+ S L+V E+T F+ +MMA DPRHG+Y+ ++RG V K+V + +++ K + FV+W P + + PP ++ + I NSTS+ E+F R+ +F M+ ++AF+HWY GEG Sbjct: 241 RFPGQLNSDLRKLAVNMVPFPRLHFFIVGFAPLTSKGSHSFRSLTVPELTQQMFDAKNMMAASDPRHGRYLTVAAIFRGRVSMKEVEDQMHSVQQKNSSYFVEWIPNNVQTALCSIPP--------RGLKMSSTFIGNSTSIQELFKRVGDQFSAMFRRKAFLHWYTGEG 402
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_NEUCR (Tubulin beta chain OS=Neurospora crassa GN=tub-2 PE=1 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 1.222e-29 Identity = 59/170 (34.71%), Postives = 97/170 (57.06%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G LN D+ + N+VP+PR+HF + +AP+ S + +SV E+T F+P +MMA D R+G+Y+ C ++RG V K+V + ++ K + FV+W P + + PP ++ + + NST++ E+F RI +F M+ ++AF+HWY GEG Sbjct: 241 RFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHHFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTAIQELFKRIGEQFTAMFRRKAFLHWYTGEG 402
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_GIBZE (Tubulin beta chain OS=Gibberella zeae GN=TUB2 PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.222e-29 Identity = 60/170 (35.29%), Postives = 96/170 (56.47%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G LN D+ + N+VP+PR+HF + +AP+ S +SV E+T F+P +MMA D R+G+Y+ C ++RG V K+V + +++K + FV+W P + + PP + + I NSTS+ E+F R+ +F M+ ++AF+HWY GEG Sbjct: 241 RFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGRVAMKEVEDQMRNVQSKNSSYFVEWIPNNIQTALCAIPP--------RGLTMSSTFIGNSTSIQELFKRVGEQFTAMFRRKAFLHWYTGEG 402
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_ENCIN (Tubulin beta chain OS=Encephalitozoon intestinalis GN=TUB2 PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.222e-29 Identity = 56/170 (32.94%), Postives = 99/170 (58.24%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G LN + + N++P+PR+HF + +AP+ + + SV+E+T F+ +MM CDP+ G+Y+ M+RG + KDV+ ++ +++K + FV+W P+ K + PT ++ + + N+TS+ E+F RI +F +M+ ++AF+HWY GEG Sbjct: 241 RFPGQLNAYLRKLAVNMIPFPRLHFFVVGFAPLTAVGTQKFKTYSVSELTQQMFDSKNMMTACDPKKGRYLTVAAMFRGKISMKDVDEQMSMVQSKNSSLFVEWIPSNVKTAVCDIAPT--------GLEMSATFVGNTTSIQELFKRISDQFTVMFRRKAFLHWYTGEG 402
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_ASPPA (Tubulin beta chain OS=Aspergillus parasiticus GN=benR PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.222e-29 Identity = 61/170 (35.88%), Postives = 96/170 (56.47%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G LN D+ + N+VP+PR+HF + +AP+ S +SV E+T F+P +MMA D R+G+Y+ C ++RG V K+V + I++K FV+W P + + PP ++ + I NSTS+ E+F R+ +F M+ ++AF+HWY GEG Sbjct: 241 RFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNIQSKNQTYFVEWIPNNIQTALCSIPP--------RGLKMSSTFIGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEG 402 The following BLAST results are available for this feature:
BLAST of CX288800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 403
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288800 ID=CX288800; Name=CX288800; organism=Citrus clementina; type=EST; length=511bpback to top |