CX288800

Overview
NameCX288800
Unique NameCX288800
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_POLAG (Tubulin beta chain OS=Polytomella agilis GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.354e-30
Identity = 56/170 (32.94%), Postives = 95/170 (55.88%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   NL+P+PR+HF +  + P+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ +   I NST++ E+F R+  +F  M+ ++AF+HWY GEG
Sbjct:  241 RFPGQLNADLRKLAVNLIPFPRLHFFMVGFTPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPP--------KGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEG 402          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_CHLRE (Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinhardtii GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.354e-30
Identity = 56/170 (32.94%), Postives = 95/170 (55.88%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   NL+P+PR+HF +  + P+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ +   I NST++ E+F R+  +F  M+ ++AF+HWY GEG
Sbjct:  241 RFPGQLNADLRKLAVNLIPFPRLHFFMVGFTPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPP--------KGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEG 402          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_CHLIN (Tubulin beta chain OS=Chlamydomonas incerta GN=TUBB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.354e-30
Identity = 56/170 (32.94%), Postives = 95/170 (55.88%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   NL+P+PR+HF +  + P+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ +   I NST++ E+F R+  +F  M+ ++AF+HWY GEG
Sbjct:  241 RFPGQLNADLRKLAVNLIPFPRLHFFMVGFTPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPP--------KGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEG 402          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_ACHKL (Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.354e-30
Identity = 59/170 (34.71%), Postives = 95/170 (55.88%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN  V +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   F+  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ +   I NST++ E+F R+  +F  M+ ++AF+HWY GEG
Sbjct:  240 RFPGQLN-SVLKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQQFDAKNMMCAADPRHGRYLTAACMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKASVCDIPP--------KGLKMSTTFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEG 400          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB1_VOLCA (Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.354e-30
Identity = 56/170 (32.94%), Postives = 95/170 (55.88%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   NL+P+PR+HF +  + P+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ +   I NST++ E+F R+  +F  M+ ++AF+HWY GEG
Sbjct:  241 RFPGQLNADLRKLAVNLIPFPRLHFFMVGFTPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPP--------KGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEG 402          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_PNECA (Tubulin beta chain OS=Pneumocystis carinii GN=TUB-B PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.222e-29
Identity = 60/170 (35.29%), Postives = 96/170 (56.47%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   N+VP+PR+HF +  +AP+ S        L+V E+T   F+  +MMA  DPRHG+Y+    ++RG V  K+V   + +++ K +  FV+W P   +  +   PP          ++ +   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEG
Sbjct:  241 RFPGQLNSDLRKLAVNMVPFPRLHFFIVGFAPLTSKGSHSFRSLTVPELTQQMFDAKNMMAASDPRHGRYLTVAAIFRGRVSMKEVEDQMHSVQQKNSSYFVEWIPNNVQTALCSIPP--------RGLKMSSTFIGNSTSIQELFKRVGDQFSAMFRRKAFLHWYTGEG 402          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_NEUCR (Tubulin beta chain OS=Neurospora crassa GN=tub-2 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.222e-29
Identity = 59/170 (34.71%), Postives = 97/170 (57.06%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   N+VP+PR+HF +  +AP+ S    +   +SV E+T   F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   + NST++ E+F RI  +F  M+ ++AF+HWY GEG
Sbjct:  241 RFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHHFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTAIQELFKRIGEQFTAMFRRKAFLHWYTGEG 402          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_GIBZE (Tubulin beta chain OS=Gibberella zeae GN=TUB2 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.222e-29
Identity = 60/170 (35.29%), Postives = 96/170 (56.47%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   N+VP+PR+HF +  +AP+ S        +SV E+T   F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  +++K +  FV+W P   +  +   PP          +  +   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEG
Sbjct:  241 RFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGRVAMKEVEDQMRNVQSKNSSYFVEWIPNNIQTALCAIPP--------RGLTMSSTFIGNSTSIQELFKRVGEQFTAMFRRKAFLHWYTGEG 402          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_ENCIN (Tubulin beta chain OS=Encephalitozoon intestinalis GN=TUB2 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.222e-29
Identity = 56/170 (32.94%), Postives = 99/170 (58.24%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN  + +   N++P+PR+HF +  +AP+ +      +  SV+E+T   F+  +MM  CDP+ G+Y+    M+RG +  KDV+  ++ +++K +  FV+W P+  K  +    PT         ++ +   + N+TS+ E+F RI  +F +M+ ++AF+HWY GEG
Sbjct:  241 RFPGQLNAYLRKLAVNMIPFPRLHFFVVGFAPLTAVGTQKFKTYSVSELTQQMFDSKNMMTACDPKKGRYLTVAAMFRGKISMKDVDEQMSMVQSKNSSLFVEWIPSNVKTAVCDIAPT--------GLEMSATFVGNTTSIQELFKRISDQFTVMFRRKAFLHWYTGEG 402          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_ASPPA (Tubulin beta chain OS=Aspergillus parasiticus GN=benR PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.222e-29
Identity = 61/170 (35.88%), Postives = 96/170 (56.47%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   N+VP+PR+HF +  +AP+ S        +SV E+T   F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  I++K    FV+W P   +  +   PP          ++ +   I NSTS+ E+F R+  +F  M+ ++AF+HWY GEG
Sbjct:  241 RFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNIQSKNQTYFVEWIPNNIQTALCSIPP--------RGLKMSSTFIGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEG 402          
The following BLAST results are available for this feature:
BLAST of CX288800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBB_POLAG9.354e-3032.94Tubulin beta chain OS=Polytomella agilis GN=TUBB1 ... [more]
TBB_CHLRE9.354e-3032.94Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinh... [more]
TBB_CHLIN9.354e-3032.94Tubulin beta chain OS=Chlamydomonas incerta GN=TUB... [more]
TBB_ACHKL9.354e-3034.71Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1[more]
TBB1_VOLCA9.354e-3032.94Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3... [more]
TBB_PNECA1.222e-2935.29Tubulin beta chain OS=Pneumocystis carinii GN=TUB-... [more]
TBB_NEUCR1.222e-2934.71Tubulin beta chain OS=Neurospora crassa GN=tub-2 P... [more]
TBB_GIBZE1.222e-2935.29Tubulin beta chain OS=Gibberella zeae GN=TUB2 PE=3... [more]
TBB_ENCIN1.222e-2932.94Tubulin beta chain OS=Encephalitozoon intestinalis... [more]
TBB_ASPPA1.222e-2935.88Tubulin beta chain OS=Aspergillus parasiticus GN=b... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02004E09SK IF1 Citrus clementina cDNA clone C02004E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288800 ID=CX288800; Name=CX288800; organism=Citrus clementina; type=EST; length=511bp
GAGGTTTGATGGTGCTTTGAATGTGGATGTGACTGAATTCCAAACCAACT
TGGTCCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTC
ATCTCAGCTGAGAAGGCCTACCATGAACAACTCTCAGTTGCTGAGATCAC
CAACAGTGCCTTTGAGCCCTCATCTATGATGGCCAAATGTGATCCTCGTC
ATGGCAAGTACATGGCTTGCTGCCTCATGTACCGTGGTGATGTTGTGCCC
AAGGATGTCAATGCAGCTGTTGCTACCATCAAGACCAAGCGTACAATCCA
ATTCGTCGACTGGTGCCCGACTGGGTTCAAGTGTGGTATCAACTACCAGC
CACCAACTGTTGTTCCTGGTGGTGACCTTGCCAAGGTGCAAAGGGCTGTT
TGCATGATCTCCAACTCCACCAGTGTGGCAGAGGTGTTCTCTCGCATTGA
CCACAAGTTTGATCTTATGTATGCAAAGCGTGCTTTCGTCCACTGGTATG
TTGGCGAGGGT
back to top